Clone BS13755 Report

Search the DGRC for BS13755

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG14480-RA
Protein status:BS13755.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13755.3prime Sequence

577 bp (539 high quality bases) assembled on 2006-10-13

> BS13755.3prime
ATGGTCTAGAAAGCTTCTACTCTGAGCACTGCTTCTTCTTGGGAATTTTG
CGGCCACATAAGTCGGTTCGGCTGCACATACTGGGTTCCTCCTCATCGGT
GCTGGCCTCCGAGTCACTAGACTCCGTGTAGGAGCCGATGCCCGGAAGTA
TAGCGATGCACTTTAGGGCCCCCTGGTTGTATTTGTTTGTAATTAATGTG
GTGTTCGTTGTCTTATCAGCAGGGTCCTTGGTTGCTTCATTTGTCGCTGT
CTGTTCGACCTCATTCTCAGTGATTTTGGCTACTTTACTGGTGGTGGGCA
GTTCGCCGTTTTTTCTCTTGATGCCCTGGCCGAGCAGCGTCTTCTGAGTG
CTACGCCCGACCGAAGCTCCCGCGGACTTCGCTGTGGTTTTTAGTTCAGC
TTGCAGTTTCTTGTCTACACTCTCCTCCTGCAGCTTTTCCACACGATTGC
GAAAATCCTTTAGTTCTAGCTCCTCGTCGCGCATTTGCTGGCGCTCCGCG
TGTATTTTATGGGCATCGACCAATTCCAGAAACTGCACCTCATCATCGTC
CAGACCACGGATGAGGTTTTTCAGCTT

BS13755.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-PA 750 CG14480-RA 190..750 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-RB 875 CG14480-RB 243..803 577..17 2805 100 Minus
CG14480-RA 1337 CG14480-RA 705..1265 577..17 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565386..17565780 411..17 1975 100 Minus
2R 25286936 2R 17565164..17565324 570..410 805 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:49:51 has no hits.

BS13755.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:44 Download gff for BS13755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-PA 190..750 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:47 Download gff for BS13755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 705..1265 17..577 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:32 Download gff for BS13755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 705..1265 17..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:32 Download gff for BS13755.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17565164..17565324 410..570 100 -> Minus
2R 17565388..17565780 17..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:47 Download gff for BS13755.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13452669..13452829 410..570 100 -> Minus
arm_2R 13452893..13453285 17..409 100   Minus

BS13755.5prime Sequence

616 bp (566 high quality bases) assembled on 2006-10-13

> BS13755.5prime
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGANGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACCAACAA
ATACAACCCGGGGGGC

BS13755.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-PA 750 CG14480-RA 1..598 17..614 2921 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-RB 875 CG14480-RB 53..651 16..614 2954 99.5 Plus
CG14480-RA 1337 CG14480-RA 515..1113 16..614 2954 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565386..17565628 372..614 1174 98.8 Plus
2R 25286936 2R 17564907..17565103 16..212 985 100 Plus
2R 25286936 2R 17565164..17565324 213..373 805 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:38:44 has no hits.

BS13755.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:45 Download gff for BS13755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-PA 1..599 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:00 Download gff for BS13755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 508..1114 10..616 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:55 Download gff for BS13755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 508..1114 10..616 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:55 Download gff for BS13755.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17565164..17565324 213..373 100 -> Plus
2R 17565388..17565629 374..616 98   Plus
2R 17564900..17565103 10..212 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:00 Download gff for BS13755.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13452405..13452608 10..212 98 -> Plus
arm_2R 13452669..13452829 213..373 100 -> Plus
arm_2R 13452893..13453134 374..616 98   Plus

BS13755.complete Sequence

782 bp assembled on 2006-11-01

GenBank Submission: FJ638856

> BS13755.complete
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGAGGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACAAACAA
ATACAACCAGGGGGCCCTAAAGTGCATCGCTATACTTCCGGGCATCGGCT
CCTACACGGAGTCTAGTGACTCGGAGGCCAGCACCGATGAGGAGGAACCC
AGTATGTGCAGCCGAACCGACTTATGTGGCCGCAAAATTCCCAAGAAGAA
GCAGTGCTCAGAGTAGAAGCTTTCTAGACCAT

BS13755.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-RB 750 CG14480-PB 1..750 17..766 3750 100 Plus
CG14480-RA 750 CG14480-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-RB 875 CG14480-RB 53..803 16..766 3755 100 Plus
CG14480-RA 1337 CG14480-RA 515..1265 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565386..17565780 372..766 1975 100 Plus
2R 25286936 2R 17564907..17565103 16..212 985 100 Plus
2R 25286936 2R 17565164..17565324 213..373 805 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:01:45 has no hits.

BS13755.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:15 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:40 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 508..1265 10..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:57 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 516..1265 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:15 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 508..1265 10..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:04 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
CG14480-RA 516..1265 17..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:04 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17565388..17565780 374..766 100   Plus
2R 17564908..17565103 17..212 100 -> Plus
2R 17565164..17565324 213..373 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:57 Download gff for BS13755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13452413..13452608 17..212 100 -> Plus
arm_2R 13452669..13452829 213..373 100 -> Plus
arm_2R 13452893..13453285 374..766 100   Plus

BS13755.pep Sequence

Translation from 16 to 765

> BS13755.pep
MSSGFVTEAEATEQRQRRQEEWERVRQPEDPLERPEEPYDGRSLYERLKQ
NKDKKDMEFEEAHKLKNLIRGLDDDEVQFLELVDAHKIHAERQQMRDEEL
ELKDFRNRVEKLQEESVDKKLQAELKTTAKSAGASVGRSTQKTLLGQGIK
RKNGELPTTSKVAKITENEVEQTATNEATKDPADKTTNTTLITNKYNQGA
LKCIAILPGIGSYTESSDSEASTDEEEPSMCSRTDLCGRKIPKKKQCSE*

BS13755.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14480-PB 249 CG14480-PB 1..249 1..249 1273 100 Plus
CG14480-PA 249 CG14480-PA 1..249 1..249 1273 100 Plus