Clone Sequence Records
BS13755.3prime Sequence
577 bp (539 high quality bases) assembled on 2006-10-13
> BS13755.3prime
ATGGTCTAGAAAGCTTCTACTCTGAGCACTGCTTCTTCTTGGGAATTTTG
CGGCCACATAAGTCGGTTCGGCTGCACATACTGGGTTCCTCCTCATCGGT
GCTGGCCTCCGAGTCACTAGACTCCGTGTAGGAGCCGATGCCCGGAAGTA
TAGCGATGCACTTTAGGGCCCCCTGGTTGTATTTGTTTGTAATTAATGTG
GTGTTCGTTGTCTTATCAGCAGGGTCCTTGGTTGCTTCATTTGTCGCTGT
CTGTTCGACCTCATTCTCAGTGATTTTGGCTACTTTACTGGTGGTGGGCA
GTTCGCCGTTTTTTCTCTTGATGCCCTGGCCGAGCAGCGTCTTCTGAGTG
CTACGCCCGACCGAAGCTCCCGCGGACTTCGCTGTGGTTTTTAGTTCAGC
TTGCAGTTTCTTGTCTACACTCTCCTCCTGCAGCTTTTCCACACGATTGC
GAAAATCCTTTAGTTCTAGCTCCTCGTCGCGCATTTGCTGGCGCTCCGCG
TGTATTTTATGGGCATCGACCAATTCCAGAAACTGCACCTCATCATCGTC
CAGACCACGGATGAGGTTTTTCAGCTT
BS13755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PA | 750 | CG14480-RA | 190..750 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 243..803 | 577..17 | 2805 | 100 | Minus |
CG14480-RA | 1337 | CG14480-RA | 705..1265 | 577..17 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565780 | 411..17 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 17565164..17565324 | 570..410 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:49:51 has no hits.
BS13755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:44 Download gff for
BS13755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 190..750 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:47 Download gff for
BS13755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 705..1265 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:32 Download gff for
BS13755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 705..1265 | 17..577 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:32 Download gff for
BS13755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 410..570 | 100 | -> | Minus |
2R | 17565388..17565780 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:47 Download gff for
BS13755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452669..13452829 | 410..570 | 100 | -> | Minus |
arm_2R | 13452893..13453285 | 17..409 | 100 | | Minus |
BS13755.5prime Sequence
616 bp (566 high quality bases) assembled on 2006-10-13
> BS13755.5prime
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGANGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACCAACAA
ATACAACCCGGGGGGC
BS13755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PA | 750 | CG14480-RA | 1..598 | 17..614 | 2921 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 53..651 | 16..614 | 2954 | 99.5 | Plus |
CG14480-RA | 1337 | CG14480-RA | 515..1113 | 16..614 | 2954 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565628 | 372..614 | 1174 | 98.8 | Plus |
2R | 25286936 | 2R | 17564907..17565103 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17565164..17565324 | 213..373 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:38:44 has no hits.
BS13755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:45 Download gff for
BS13755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-PA | 1..599 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:00 Download gff for
BS13755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1114 | 10..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:55 Download gff for
BS13755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1114 | 10..616 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:55 Download gff for
BS13755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 213..373 | 100 | -> | Plus |
2R | 17565388..17565629 | 374..616 | 98 | | Plus |
2R | 17564900..17565103 | 10..212 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:00 Download gff for
BS13755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452405..13452608 | 10..212 | 98 | -> | Plus |
arm_2R | 13452669..13452829 | 213..373 | 100 | -> | Plus |
arm_2R | 13452893..13453134 | 374..616 | 98 | | Plus |
BS13755.complete Sequence
782 bp assembled on 2006-11-01
GenBank Submission: FJ638856
> BS13755.complete
GAAGTTATCAGTCGACATGAGTTCGGGCTTTGTGACTGAAGCTGAGGCGA
CCGAGCAAAGGCAGAGACGTCAGGAGGAATGGGAGCGTGTACGCCAGCCG
GAGGATCCACTAGAACGACCTGAGGAACCCTACGATGGGCGCTCACTTTA
TGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAG
CCCACAAGCTGAAAAACCTCATCCGTGGTCTGGACGATGATGAGGTGCAG
TTTCTGGAATTGGTCGATGCCCATAAAATACACGCGGAGCGCCAGCAAAT
GCGCGACGAGGAGCTAGAACTAAAGGATTTTCGCAATCGTGTGGAAAAGC
TGCAGGAGGAGAGTGTAGACAAGAAACTGCAAGCTGAACTAAAAACCACA
GCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAGCACTCAGAAGACGCTGCT
CGGCCAGGGCATCAAGAGAAAAAACGGCGAACTGCCCACCACCAGTAAAG
TAGCCAAAATCACTGAGAATGAGGTCGAACAGACAGCGACAAATGAAGCA
ACCAAGGACCCTGCTGATAAGACAACGAACACCACATTAATTACAAACAA
ATACAACCAGGGGGCCCTAAAGTGCATCGCTATACTTCCGGGCATCGGCT
CCTACACGGAGTCTAGTGACTCGGAGGCCAGCACCGATGAGGAGGAACCC
AGTATGTGCAGCCGAACCGACTTATGTGGCCGCAAAATTCCCAAGAAGAA
GCAGTGCTCAGAGTAGAAGCTTTCTAGACCAT
BS13755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 750 | CG14480-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG14480-RA | 750 | CG14480-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RB | 875 | CG14480-RB | 53..803 | 16..766 | 3755 | 100 | Plus |
CG14480-RA | 1337 | CG14480-RA | 515..1265 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565780 | 372..766 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 17564907..17565103 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17565164..17565324 | 213..373 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:01:45 has no hits.
BS13755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:15 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:40 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1265 | 10..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:57 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 516..1265 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:15 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 508..1265 | 10..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:04 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 516..1265 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:04 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565388..17565780 | 374..766 | 100 | | Plus |
2R | 17564908..17565103 | 17..212 | 100 | -> | Plus |
2R | 17565164..17565324 | 213..373 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:57 Download gff for
BS13755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452413..13452608 | 17..212 | 100 | -> | Plus |
arm_2R | 13452669..13452829 | 213..373 | 100 | -> | Plus |
arm_2R | 13452893..13453285 | 374..766 | 100 | | Plus |
BS13755.pep Sequence
Translation from 16 to 765
> BS13755.pep
MSSGFVTEAEATEQRQRRQEEWERVRQPEDPLERPEEPYDGRSLYERLKQ
NKDKKDMEFEEAHKLKNLIRGLDDDEVQFLELVDAHKIHAERQQMRDEEL
ELKDFRNRVEKLQEESVDKKLQAELKTTAKSAGASVGRSTQKTLLGQGIK
RKNGELPTTSKVAKITENEVEQTATNEATKDPADKTTNTTLITNKYNQGA
LKCIAILPGIGSYTESSDSEASTDEEEPSMCSRTDLCGRKIPKKKQCSE*
BS13755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PB | 249 | CG14480-PB | 1..249 | 1..249 | 1273 | 100 | Plus |
CG14480-PA | 249 | CG14480-PA | 1..249 | 1..249 | 1273 | 100 | Plus |