Clone BS13759 Report

Search the DGRC for BS13759

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG13539-RA
Protein status:BS13759.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13759.3prime Sequence

773 bp (687 high quality bases) assembled on 2006-10-13

> BS13759.3prime
ATGGTCTAGAAAGCTTTCAAGAAGTATCTACGATTGGAAACGCTATAGTT
TTGATCTTTCCGCCAATGACGTGGACTTCATAGTGAATGTTCTTAACGAT
TATAACTGTGGTGGTCGGTTGAGCTGGCAGTTTTGGAACCTTGATGGATT
CCTTGGTGCAGTTGAAGGTCCACTGGTCCACCGTGGGCACTCTGGTGAGC
AGGTCGAAGCACTGGGCCAACTTGGCTGACCACACGGTAATACAGTCGAA
ATTCAGACCTTCGCGCGAATGCAACTTAACCACTTCATTCATATTGCGAA
AGGTGCTCATAGTCATTATGGCCGTGGGCTTGCCACCGAAATAGAATTGG
GGGAAATCCAAGACTATCAAAGGGGATCCCTTCATCCGGCGACCATAACG
CTTCTTCGTATCCGACTCCTCGAACTCCTCGATGTGAATGGTGGAGCAGT
TCATTCGATCGATGAGCTTCACTGTCTTCAGGTAATTGGGATGGTGTTGG
ATGCGCTCGCTCATCGGCTTCAAGTTGGCTCGTATTCTCTTAATCATCTC
GTCCCGTATGGACTCCTCGACCAGAACACTGGCCACCAGTCCAGTTCCAA
TCGGATGGATCATGTCCGAGACTATGGCCTCTATAACCTGATCCATATCC
CCACTGGCGAACAGAACCATCATGCGCGGAAGGATCCACGACTTGTGGCT
TCCATCCTCCGGATATCTGTGGGCATGTCGCGAGAGTAAGGACAAGTAGA
TGTCCCCGATCACCTCCTCTTCG

BS13759.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PA 783 CG13539-RA 31..783 769..17 3665 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 304..1060 773..17 3710 99.3 Minus
CG13539-RA 881 CG13539-RA 86..842 773..17 3710 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184493..23185249 773..17 3710 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 16:46:55 has no hits.

BS13759.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:47 Download gff for BS13759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 27..783 17..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:46 Download gff for BS13759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 86..845 12..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:48 Download gff for BS13759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 86..845 12..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:48 Download gff for BS13759.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23184493..23185252 12..773 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:46 Download gff for BS13759.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19072016..19072775 12..773 99   Minus

BS13759.5prime Sequence

754 bp (667 high quality bases) assembled on 2006-10-13

> BS13759.5prime
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCCTCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCCCTATGAAGTCCACGTCAT
TGGC

BS13759.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PA 783 CG13539-RA 1..738 17..754 3565 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 278..1015 17..754 3615 99.3 Plus
CG13539-RA 881 CG13539-RA 60..797 17..754 3615 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184467..23185204 17..754 3615 99.3 Plus
Blast to na_te.dros performed on 2015-01-30 17:50:25 has no hits.

BS13759.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:48 Download gff for BS13759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-PA 1..738 17..754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:54 Download gff for BS13759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..797 17..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:37 Download gff for BS13759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..797 17..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:37 Download gff for BS13759.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23184467..23185204 17..754 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:54 Download gff for BS13759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19071990..19072727 17..754 99   Plus

BS13759.complete Sequence

815 bp assembled on 2006-11-01

GenBank Submission: FJ637520

> BS13759.complete
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTTGAA
AGCTTTCTAGACCAT

BS13759.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 783 CG13539-PB 1..783 17..799 3870 99.6 Plus
CG13539-RA 783 CG13539-PA 1..783 17..799 3870 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-RB 1099 CG13539-RB 278..1060 17..799 3870 99.6 Plus
CG13539-RA 881 CG13539-RA 60..842 17..799 3870 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23184467..23185249 17..799 3870 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:24 has no hits.

BS13759.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:59 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:25 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:03 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..841 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:00 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..845 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:59 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
CG13539-RA 60..841 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:59 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23184467..23185248 17..798 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:03 Download gff for BS13759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19071990..19072771 17..798 99   Plus

BS13759.pep Sequence

Translation from 16 to 798

> BS13759.pep
MTDHSAHPNEEEVIGDIYLSLLSRHAHRYPEDGSHKSWILPRMMVLFASG
DMDQVIEAIVSDMIHPIGTGLVASVLVEESIRDEMIKRIRANLKPMSERI
QHHPNYLKTVKLIDRMNCSTIHIEEFEESDTKKRYGRRMKGSPLIVLDFP
QFYFGGKPTAIMTMSTFRNMNEVVKLHSREGLNFDCITVWSAKLAQCFDL
LTRVPTVDQWTFNCTKESIKVPKLPAQPTTTVIIVKNIHYEVHVIGGKIK
TIAFPIVDTS*

BS13759.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13539-PB 260 CG13539-PB 1..260 1..260 1363 100 Plus
CG13539-PA 260 CG13539-PA 1..260 1..260 1363 100 Plus
CG15717-PE 252 CG15717-PE 35..246 34..256 301 28.1 Plus
CG15717-PC 252 CG15717-PC 35..246 34..256 301 28.1 Plus
CG15717-PA 252 CG15717-PA 35..246 34..256 301 28.1 Plus