Clone Sequence Records
BS13759.3prime Sequence
773 bp (687 high quality bases) assembled on 2006-10-13
> BS13759.3prime
ATGGTCTAGAAAGCTTTCAAGAAGTATCTACGATTGGAAACGCTATAGTT
TTGATCTTTCCGCCAATGACGTGGACTTCATAGTGAATGTTCTTAACGAT
TATAACTGTGGTGGTCGGTTGAGCTGGCAGTTTTGGAACCTTGATGGATT
CCTTGGTGCAGTTGAAGGTCCACTGGTCCACCGTGGGCACTCTGGTGAGC
AGGTCGAAGCACTGGGCCAACTTGGCTGACCACACGGTAATACAGTCGAA
ATTCAGACCTTCGCGCGAATGCAACTTAACCACTTCATTCATATTGCGAA
AGGTGCTCATAGTCATTATGGCCGTGGGCTTGCCACCGAAATAGAATTGG
GGGAAATCCAAGACTATCAAAGGGGATCCCTTCATCCGGCGACCATAACG
CTTCTTCGTATCCGACTCCTCGAACTCCTCGATGTGAATGGTGGAGCAGT
TCATTCGATCGATGAGCTTCACTGTCTTCAGGTAATTGGGATGGTGTTGG
ATGCGCTCGCTCATCGGCTTCAAGTTGGCTCGTATTCTCTTAATCATCTC
GTCCCGTATGGACTCCTCGACCAGAACACTGGCCACCAGTCCAGTTCCAA
TCGGATGGATCATGTCCGAGACTATGGCCTCTATAACCTGATCCATATCC
CCACTGGCGAACAGAACCATCATGCGCGGAAGGATCCACGACTTGTGGCT
TCCATCCTCCGGATATCTGTGGGCATGTCGCGAGAGTAAGGACAAGTAGA
TGTCCCCGATCACCTCCTCTTCG
BS13759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PA | 783 | CG13539-RA | 31..783 | 769..17 | 3665 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 304..1060 | 773..17 | 3710 | 99.3 | Minus |
CG13539-RA | 881 | CG13539-RA | 86..842 | 773..17 | 3710 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184493..23185249 | 773..17 | 3710 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:46:55 has no hits.
BS13759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:47 Download gff for
BS13759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 27..783 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:46 Download gff for
BS13759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 86..845 | 12..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:48 Download gff for
BS13759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 86..845 | 12..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:48 Download gff for
BS13759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184493..23185252 | 12..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:46 Download gff for
BS13759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19072016..19072775 | 12..773 | 99 | | Minus |
BS13759.5prime Sequence
754 bp (667 high quality bases) assembled on 2006-10-13
> BS13759.5prime
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCCTCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCCCTATGAAGTCCACGTCAT
TGGC
BS13759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PA | 783 | CG13539-RA | 1..738 | 17..754 | 3565 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 278..1015 | 17..754 | 3615 | 99.3 | Plus |
CG13539-RA | 881 | CG13539-RA | 60..797 | 17..754 | 3615 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184467..23185204 | 17..754 | 3615 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:50:25 has no hits.
BS13759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:48 Download gff for
BS13759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:54 Download gff for
BS13759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..797 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:37 Download gff for
BS13759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..797 | 17..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:37 Download gff for
BS13759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184467..23185204 | 17..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:54 Download gff for
BS13759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19071990..19072727 | 17..754 | 99 | | Plus |
BS13759.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ637520
> BS13759.complete
GAAGTTATCAGTCGACATGACCGACCATTCAGCCCATCCAAACGAGGAGG
AGGTGATCGGGGACATCTACTTGTCCCTACTCTCGCGACATGCCCACAGA
TATCCGGAGGATGGAAGCCACAAGTCGTGGATCCTTCCGCGCATGATGGT
TCTGTTCGCCAGTGGGGATATGGATCAGGTTATAGAGGCCATAGTCTCGG
ACATGATCCATCCGATTGGAACTGGACTGGTGGCCAGTGTTCTGGTCGAG
GAGTCCATACGGGACGAGATGATTAAGAGAATACGAGCCAACTTGAAGCC
GATGAGCGAGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGC
TCATCGATCGAATGAACTGCTCCACCATTCACATCGAGGAGTTCGAGGAG
TCGGATACGAAGAAGCGTTATGGTCGCCGGATGAAGGGATCCCCTTTGAT
AGTCTTGGATTTCCCCCAATTCTATTTCGGTGGCAAGCCCACGGCCATAA
TGACTATGAGCACCTTTCGCAATATGAATGAAGTGGTTAAGTTGCATTCG
CGCGAAGGTCTGAATTTCGACTGTATTACCGTGTGGTCAGCCAAGTTGGC
CCAGTGCTTCGACCTGCTCACCAGAGTGCCCACGGTGGACCAGTGGACCT
TCAACTGCACCAAGGAATCCATCAAGGTTCCAAAACTGCCAGCTCAACCG
ACCACCACAGTTATAATCGTTAAGAACATTCACTATGAAGTCCACGTCAT
TGGCGGAAAGATCAAAACTATAGCGTTTCCAATCGTAGATACTTCTTGAA
AGCTTTCTAGACCAT
BS13759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 783 | CG13539-PB | 1..783 | 17..799 | 3870 | 99.6 | Plus |
CG13539-RA | 783 | CG13539-PA | 1..783 | 17..799 | 3870 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-RB | 1099 | CG13539-RB | 278..1060 | 17..799 | 3870 | 99.6 | Plus |
CG13539-RA | 881 | CG13539-RA | 60..842 | 17..799 | 3870 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23184467..23185249 | 17..799 | 3870 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:24 has no hits.
BS13759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:59 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:25 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:03 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..841 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:00 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..845 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:59 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13539-RA | 60..841 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:59 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23184467..23185248 | 17..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:03 Download gff for
BS13759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19071990..19072771 | 17..798 | 99 | | Plus |
BS13759.pep Sequence
Translation from 16 to 798
> BS13759.pep
MTDHSAHPNEEEVIGDIYLSLLSRHAHRYPEDGSHKSWILPRMMVLFASG
DMDQVIEAIVSDMIHPIGTGLVASVLVEESIRDEMIKRIRANLKPMSERI
QHHPNYLKTVKLIDRMNCSTIHIEEFEESDTKKRYGRRMKGSPLIVLDFP
QFYFGGKPTAIMTMSTFRNMNEVVKLHSREGLNFDCITVWSAKLAQCFDL
LTRVPTVDQWTFNCTKESIKVPKLPAQPTTTVIIVKNIHYEVHVIGGKIK
TIAFPIVDTS*
BS13759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13539-PB | 260 | CG13539-PB | 1..260 | 1..260 | 1363 | 100 | Plus |
CG13539-PA | 260 | CG13539-PA | 1..260 | 1..260 | 1363 | 100 | Plus |
CG15717-PE | 252 | CG15717-PE | 35..246 | 34..256 | 301 | 28.1 | Plus |
CG15717-PC | 252 | CG15717-PC | 35..246 | 34..256 | 301 | 28.1 | Plus |
CG15717-PA | 252 | CG15717-PA | 35..246 | 34..256 | 301 | 28.1 | Plus |