Clone BS13760 Report

Search the DGRC for BS13760

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG10396-RA
Protein status:BS13760.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13760.3prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS13760.3prime
ATGGTCTAGAAAGCTTCTACTTCCACTTGTTCTCTCGGTAGCACCATTTG
GACGCTAGTCCAGTAATTGGGTTCATTTGCAGCTGGATGATGCGCCGCAA
TTGGGCCGACTGGCGCTCATCGTTAAACGTATCCGGCAGTTTTCCATAGA
GAACGGTCTTCATAGTTATCGATATCGCGATTCCGATTGACACAAGCCAC
AAAGCGACGCCCAGACACATCTTCCATTCGGGTGTAATGTGCTGGAATTC
TGCATATGTTTGGCAGAAGCTATATCGGTATAATTGCTTCTTTTCATCCA
GCGACAGCTTCTTCCAGTCGTCCAACTCCTTTTCACGTAGGGCACACAAC
TCTGGGCTAACCTCCCGATATCGAATAGCCGGAAAAGGGCAGTCCGGACT
ATCGAAGTATATGGGTCGCCCATTGATTCCATGACCAACGACCTGGCGAT
CGGCGACCATAAGTCGAATACCATCTCCTCCACTGGCAAACCGACGCCTC
GTCATCTGGAAAAGTTTCCTCAATTTCATACAGGGAAATAAGCTCATGTC
GACTGATAACT

BS13760.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-PA 531 CG10396-RA 1..531 547..17 2630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-RA 667 CG10396-RA 63..599 553..17 2655 99.6 Minus
CG10396-RB 672 CG10396-RB 113..604 508..17 2445 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5354119..5354655 553..17 2655 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:08:04 has no hits.

BS13760.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:48 Download gff for BS13760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-PA 1..531 17..547 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:56 Download gff for BS13760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 17..553 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:21 Download gff for BS13760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 17..553 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:21 Download gff for BS13760.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5354119..5354655 17..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:56 Download gff for BS13760.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1241624..1242160 17..553 99   Minus

BS13760.5prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS13760.5prime
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGTAGAAG
CTTTCTAGACC

BS13760.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-PA 531 CG10396-RA 1..531 17..547 2630 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-RA 667 CG10396-RA 63..599 11..547 2655 99.6 Plus
CG10396-RB 672 CG10396-RB 113..604 56..547 2445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5354119..5354655 11..547 2655 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 17:46:18 has no hits.

BS13760.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:49 Download gff for BS13760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-PA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:02 Download gff for BS13760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 11..547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:13 Download gff for BS13760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 11..547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:13 Download gff for BS13760.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5354119..5354655 11..547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:02 Download gff for BS13760.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1241624..1242160 11..547 99   Plus

BS13760.complete Sequence

563 bp assembled on 2006-11-01

GenBank Submission: FJ637521

> BS13760.complete
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGTAGAAG
CTTTCTAGACCAT

BS13760.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-RA 531 CG10396-PA 1..531 17..547 2640 99.8 Plus
CG10396-RB 489 CG10396-PB 1..489 59..547 2430 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-RA 667 CG10396-RA 63..599 11..547 2655 99.6 Plus
CG10396-RB 672 CG10396-RB 113..604 56..547 2445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5354119..5354655 11..547 2655 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 21:02:06 has no hits.

BS13760.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:27 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:33 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 11..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:13 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 69..599 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:29 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 63..599 11..547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:19 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
CG10396-RA 69..599 17..547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:19 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5354125..5354655 17..547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:13 Download gff for BS13760.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1241630..1242160 17..547 99   Plus

BS13760.pep Sequence

Translation from 16 to 546

> BS13760.pep
MSLFPCMKLRKLFQMTRRRFASGGDGIRLMVADRQVVGHGINGRPIYFDS
PDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRYSFCQTYAE
FQHITPEWKMCLGVALWLVSIGIAISITMKTVLYGKLPDTFNDERQSAQL
RRIIQLQMNPITGLASKWCYRENKWK*

BS13760.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10396-PA 176 CG10396-PA 1..176 1..176 947 100 Plus
CG10396-PB 162 CG10396-PB 1..162 15..176 873 100 Plus
CoIV-PD 182 CG10664-PD 36..181 31..176 391 51.4 Plus
CoIV-PC 182 CG10664-PC 36..181 31..176 391 51.4 Plus
CoIV-PB 182 CG10664-PB 36..181 31..176 391 51.4 Plus