Clone Sequence Records
BS13760.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS13760.3prime
ATGGTCTAGAAAGCTTCTACTTCCACTTGTTCTCTCGGTAGCACCATTTG
GACGCTAGTCCAGTAATTGGGTTCATTTGCAGCTGGATGATGCGCCGCAA
TTGGGCCGACTGGCGCTCATCGTTAAACGTATCCGGCAGTTTTCCATAGA
GAACGGTCTTCATAGTTATCGATATCGCGATTCCGATTGACACAAGCCAC
AAAGCGACGCCCAGACACATCTTCCATTCGGGTGTAATGTGCTGGAATTC
TGCATATGTTTGGCAGAAGCTATATCGGTATAATTGCTTCTTTTCATCCA
GCGACAGCTTCTTCCAGTCGTCCAACTCCTTTTCACGTAGGGCACACAAC
TCTGGGCTAACCTCCCGATATCGAATAGCCGGAAAAGGGCAGTCCGGACT
ATCGAAGTATATGGGTCGCCCATTGATTCCATGACCAACGACCTGGCGAT
CGGCGACCATAAGTCGAATACCATCTCCTCCACTGGCAAACCGACGCCTC
GTCATCTGGAAAAGTTTCCTCAATTTCATACAGGGAAATAAGCTCATGTC
GACTGATAACT
BS13760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-PA | 531 | CG10396-RA | 1..531 | 547..17 | 2630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-RA | 667 | CG10396-RA | 63..599 | 553..17 | 2655 | 99.6 | Minus |
CG10396-RB | 672 | CG10396-RB | 113..604 | 508..17 | 2445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5354119..5354655 | 553..17 | 2655 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:08:04 has no hits.
BS13760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:48 Download gff for
BS13760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-PA | 1..531 | 17..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:56 Download gff for
BS13760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 17..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:21 Download gff for
BS13760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 17..553 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:21 Download gff for
BS13760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5354119..5354655 | 17..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:56 Download gff for
BS13760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1241624..1242160 | 17..553 | 99 | | Minus |
BS13760.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS13760.5prime
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGTAGAAG
CTTTCTAGACC
BS13760.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-PA | 531 | CG10396-RA | 1..531 | 17..547 | 2630 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-RA | 667 | CG10396-RA | 63..599 | 11..547 | 2655 | 99.6 | Plus |
CG10396-RB | 672 | CG10396-RB | 113..604 | 56..547 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5354119..5354655 | 11..547 | 2655 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:46:18 has no hits.
BS13760.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:49 Download gff for
BS13760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:02 Download gff for
BS13760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 11..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:13 Download gff for
BS13760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 11..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:13 Download gff for
BS13760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5354119..5354655 | 11..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:02 Download gff for
BS13760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1241624..1242160 | 11..547 | 99 | | Plus |
BS13760.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ637521
> BS13760.complete
GAAGTTATCAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAAC
TTTTCCAGATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGA
CTTATGGTCGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACC
CATATACTTCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGG
AGGTTAGCCCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGG
AAGAAGCTGTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTG
CCAAACATATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTC
TGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACT
ATGAAGACCGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCG
CCAGTCGGCCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTA
CTGGACTAGCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGTAGAAG
CTTTCTAGACCAT
BS13760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-RA | 531 | CG10396-PA | 1..531 | 17..547 | 2640 | 99.8 | Plus |
CG10396-RB | 489 | CG10396-PB | 1..489 | 59..547 | 2430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-RA | 667 | CG10396-RA | 63..599 | 11..547 | 2655 | 99.6 | Plus |
CG10396-RB | 672 | CG10396-RB | 113..604 | 56..547 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5354119..5354655 | 11..547 | 2655 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:06 has no hits.
BS13760.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:27 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:33 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 11..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:13 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 69..599 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:29 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 63..599 | 11..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:19 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10396-RA | 69..599 | 17..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:19 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5354125..5354655 | 17..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:13 Download gff for
BS13760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1241630..1242160 | 17..547 | 99 | | Plus |
BS13760.pep Sequence
Translation from 16 to 546
> BS13760.pep
MSLFPCMKLRKLFQMTRRRFASGGDGIRLMVADRQVVGHGINGRPIYFDS
PDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRYSFCQTYAE
FQHITPEWKMCLGVALWLVSIGIAISITMKTVLYGKLPDTFNDERQSAQL
RRIIQLQMNPITGLASKWCYRENKWK*
BS13760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10396-PA | 176 | CG10396-PA | 1..176 | 1..176 | 947 | 100 | Plus |
CG10396-PB | 162 | CG10396-PB | 1..162 | 15..176 | 873 | 100 | Plus |
CoIV-PD | 182 | CG10664-PD | 36..181 | 31..176 | 391 | 51.4 | Plus |
CoIV-PC | 182 | CG10664-PC | 36..181 | 31..176 | 391 | 51.4 | Plus |
CoIV-PB | 182 | CG10664-PB | 36..181 | 31..176 | 391 | 51.4 | Plus |