Clone Sequence Records
BS13762.3prime Sequence
684 bp (651 high quality bases) assembled on 2006-10-13
> BS13762.3prime
ATGGTCTAGAAAGCTTTTATTCTTTATTATGGGCGATGATATGGTTAAGG
ATCCAGTCCAAGTAGCTGCTGATGCGGGTGAACACGGCCGGGAATCCCAC
TTGACATCCCATAGAGGTTCCAAAAGAGGTGGATCCGATCAGGTAGCTGG
AGTTGCCCTGCTTGTAGACCAGCGGACCGCCAGAGTCACCATGGCAGGTG
GACTTGCCGCTGGTGGTGCTCATGCAGATCATCTTCTCCGACACAGCTCC
ACTCCAGTACATCCGGCACAGGGAGTGAGGCATAATGGGCATCTCCACGT
ATCTCAGCACGGGGGAAACCGAGTCGGAGGCATCGCTTTCCCGCCCCCAG
CCGGAGGCGAAGGCCCGGATGGACTCGTACGTGGGAAACTGGCCATTCAA
GCGACGGGGCAAACTGGCGGCCCGGATGCGATCAGTGAAACCCACAAAGG
CGGGCAATCGAATAAGCGAGATGTCATTGACCACCGTGCTGGCCATATAG
TTCGAGTGCACTATAATACCCGACTTCTCCACCATGATCCTTTCCTGACC
CTCCTCGGACTCATCACCGATGTTTATGGCCCCCAAATAGACCGTTACGG
ACTCCGCCCCATCCATGCAGTGTGCTGCTGTGATTATCCAGTAGTGTGAG
ATCAAGGTGCCGCCGCACCAAGTGCTCCAGTTCC
BS13762.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PA | 813 | CG7542-RA | 146..813 | 684..17 | 3290 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 157..824 | 684..17 | 3310 | 99.7 | Minus |
CG7542-RA | 833 | CG7542-RA | 157..824 | 684..17 | 3310 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549982..17550649 | 684..17 | 3310 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:41:03 has no hits.
BS13762.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:50 Download gff for
BS13762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 146..813 | 17..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:27 Download gff for
BS13762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 157..833 | 12..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:39 Download gff for
BS13762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 157..833 | 12..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:39 Download gff for
BS13762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549982..17550652 | 12..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:27 Download gff for
BS13762.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17543082..17543752 | 12..684 | 99 | | Minus |
BS13762.5prime Sequence
680 bp (605 high quality bases) assembled on 2006-10-13
> BS13762.5prime
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCT
BS13762.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PA | 813 | CG7542-RA | 1..664 | 17..680 | 3270 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 12..675 | 17..680 | 3290 | 99.7 | Plus |
CG7542-RA | 833 | CG7542-RA | 12..675 | 17..680 | 3290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549837..17550500 | 17..680 | 3290 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:39:43 has no hits.
BS13762.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:51 Download gff for
BS13762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:04 Download gff for
BS13762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..675 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:02 Download gff for
BS13762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..675 | 17..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:02 Download gff for
BS13762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549837..17550500 | 17..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:04 Download gff for
BS13762.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17542937..17543600 | 17..680 | 99 | | Plus |
BS13762.complete Sequence
845 bp assembled on 2006-11-01
GenBank Submission: FJ637522
> BS13762.complete
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAATAAAAGCTTTCTAGACCAT
BS13762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 813 | CG7542-PB | 1..813 | 17..829 | 4035 | 99.8 | Plus |
CG7542-RA | 813 | CG7542-PA | 1..813 | 17..829 | 4035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-RB | 1155 | CG7542-RB | 12..824 | 17..829 | 4035 | 99.8 | Plus |
CG7542-RA | 833 | CG7542-RA | 12..824 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17549837..17550649 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:38:33 has no hits.
BS13762.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:01 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:27 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:35 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..815 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:01 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..833 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:29 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7542-RA | 12..815 | 17..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:29 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17549837..17550640 | 17..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:35 Download gff for
BS13762.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17542937..17543740 | 17..820 | 99 | | Plus |
BS13762.pep Sequence
Translation from 16 to 828
> BS13762.pep
MMKLLVCVLLVGSCTAVPLLTDVEPYITNGEPAEVGQFPYQAGLNVSFGN
WSTWCGGTLISHYWIITAAHCMDGAESVTVYLGAINIGDESEEGQERIMV
EKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPT
YESIRAFASGWGRESDASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKM
ICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTSFGTSMGCQVGFPAVF
TRISSYLDWILNHIIAHNKE*
BS13762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7542-PB | 270 | CG7542-PB | 1..270 | 1..270 | 1431 | 100 | Plus |
CG7542-PA | 270 | CG7542-PA | 1..270 | 1..270 | 1431 | 100 | Plus |
CG10472-PA | 290 | CG10472-PA | 47..279 | 27..260 | 585 | 50.2 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 28..265 | 17..260 | 545 | 46.3 | Plus |
yip7-PA | 270 | CG6457-PA | 1..264 | 2..260 | 499 | 42 | Plus |