Clone BS13762 Report

Search the DGRC for BS13762

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG7542-RA
Protein status:BS13762.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13762.3prime Sequence

684 bp (651 high quality bases) assembled on 2006-10-13

> BS13762.3prime
ATGGTCTAGAAAGCTTTTATTCTTTATTATGGGCGATGATATGGTTAAGG
ATCCAGTCCAAGTAGCTGCTGATGCGGGTGAACACGGCCGGGAATCCCAC
TTGACATCCCATAGAGGTTCCAAAAGAGGTGGATCCGATCAGGTAGCTGG
AGTTGCCCTGCTTGTAGACCAGCGGACCGCCAGAGTCACCATGGCAGGTG
GACTTGCCGCTGGTGGTGCTCATGCAGATCATCTTCTCCGACACAGCTCC
ACTCCAGTACATCCGGCACAGGGAGTGAGGCATAATGGGCATCTCCACGT
ATCTCAGCACGGGGGAAACCGAGTCGGAGGCATCGCTTTCCCGCCCCCAG
CCGGAGGCGAAGGCCCGGATGGACTCGTACGTGGGAAACTGGCCATTCAA
GCGACGGGGCAAACTGGCGGCCCGGATGCGATCAGTGAAACCCACAAAGG
CGGGCAATCGAATAAGCGAGATGTCATTGACCACCGTGCTGGCCATATAG
TTCGAGTGCACTATAATACCCGACTTCTCCACCATGATCCTTTCCTGACC
CTCCTCGGACTCATCACCGATGTTTATGGCCCCCAAATAGACCGTTACGG
ACTCCGCCCCATCCATGCAGTGTGCTGCTGTGATTATCCAGTAGTGTGAG
ATCAAGGTGCCGCCGCACCAAGTGCTCCAGTTCC

BS13762.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PA 813 CG7542-RA 146..813 684..17 3290 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 157..824 684..17 3310 99.7 Minus
CG7542-RA 833 CG7542-RA 157..824 684..17 3310 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549982..17550649 684..17 3310 99.7 Minus
Blast to na_te.dros performed on 2015-02-03 06:41:03 has no hits.

BS13762.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:50 Download gff for BS13762.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 146..813 17..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:27 Download gff for BS13762.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 157..833 12..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:39 Download gff for BS13762.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 157..833 12..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:39 Download gff for BS13762.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17549982..17550652 12..684 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:27 Download gff for BS13762.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17543082..17543752 12..684 99   Minus

BS13762.5prime Sequence

680 bp (605 high quality bases) assembled on 2006-10-13

> BS13762.5prime
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCT

BS13762.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PA 813 CG7542-RA 1..664 17..680 3270 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 12..675 17..680 3290 99.7 Plus
CG7542-RA 833 CG7542-RA 12..675 17..680 3290 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549837..17550500 17..680 3290 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:39:43 has no hits.

BS13762.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:51 Download gff for BS13762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-PA 1..664 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:04 Download gff for BS13762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..675 17..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:02 Download gff for BS13762.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..675 17..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:02 Download gff for BS13762.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17549837..17550500 17..680 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:04 Download gff for BS13762.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17542937..17543600 17..680 99   Plus

BS13762.complete Sequence

845 bp assembled on 2006-11-01

GenBank Submission: FJ637522

> BS13762.complete
GAAGTTATCAGTCGACATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAG
GATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATATTACG
AATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAA
CGTCTCCTTCGGGAACTGGAGCACTTGGTGCGGCGGCACCTTGATCTCAC
ACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTA
ACGGTCTATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCA
GGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGTGCACTCGAACTATA
TGGCCAGCACGGTGGTCAATGACATCTCGCTTATTCGATTGCCCGCCTTT
GTGGGTTTCACTGATCGCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAA
TGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGCTGGG
GGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTG
GAGATGCCCATTATGCCTCACTCCCTGTGCCGGATGTACTGGAGTGGAGC
TGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCT
GCCATGGTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGC
TACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGG
ATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTA
ACCATATCATCGCCCATAATAAAGAATAAAAGCTTTCTAGACCAT

BS13762.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 813 CG7542-PB 1..813 17..829 4035 99.8 Plus
CG7542-RA 813 CG7542-PA 1..813 17..829 4035 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-RB 1155 CG7542-RB 12..824 17..829 4035 99.8 Plus
CG7542-RA 833 CG7542-RA 12..824 17..829 4035 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17549837..17550649 17..829 4035 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:38:33 has no hits.

BS13762.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:01 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:27 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:35 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..815 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:01 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..833 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:29 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
CG7542-RA 12..815 17..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:29 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17549837..17550640 17..820 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:35 Download gff for BS13762.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17542937..17543740 17..820 99   Plus

BS13762.pep Sequence

Translation from 16 to 828

> BS13762.pep
MMKLLVCVLLVGSCTAVPLLTDVEPYITNGEPAEVGQFPYQAGLNVSFGN
WSTWCGGTLISHYWIITAAHCMDGAESVTVYLGAINIGDESEEGQERIMV
EKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPT
YESIRAFASGWGRESDASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKM
ICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTSFGTSMGCQVGFPAVF
TRISSYLDWILNHIIAHNKE*

BS13762.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7542-PB 270 CG7542-PB 1..270 1..270 1431 100 Plus
CG7542-PA 270 CG7542-PA 1..270 1..270 1431 100 Plus
CG10472-PA 290 CG10472-PA 47..279 27..260 585 50.2 Plus
Jon65Aiv-PA 271 CG6467-PA 28..265 17..260 545 46.3 Plus
yip7-PA 270 CG6457-PA 1..264 2..260 499 42 Plus