Clone Sequence Records
BS13763.3prime Sequence
576 bp (556 high quality bases) assembled on 2006-10-13
> BS13763.3prime
ATGGTCTAGAAAGCTTTCAACGCCAATGGGGGACCTTGCTAACCGCTTTT
CCACAATTGAATGATTGATTGCCTTTGCTGTACTTCGATGAATCGTGTAT
CGATGGTGCGTTTAGACCGTTCCGCATATCCCGGTACATGGGAGCGTCGT
AGGAGGTCTTCATCCGGTTGACCTGTTGGCGTCCCTGGCTCGGCTGCTGA
TAGTGCTGCTGCTGCTGTTGCTGCTGCTGCTGGTGCTGCTGGTGGTACTG
CGGCTGGTGACTCTGCATAGGCTGACTGTATTGCCACATATTGGAGCTGT
TCATCATTTGGTTGGGGCTGGGACCGGAGCTCCAGCCGCCAGCTTGCGAG
GGCGACGAGGGACAGGGCGCAGACATCACAGCATTGCAGCCGCCCGTCAG
ACGTCCTTGATGCATTTGGGTGGTAGATCCACTGGGATTGTACTGTTGCA
GCGGCTGCATCTGACCCATCGAGGTCATCGGCTGCAGGTCAGGCAGCACT
GCATTGATCCCGGGGGCATCGATGGCGCCCATGGGATTGCCCATCATGGG
CATCATGGTCATGCTGCTCAGGGGAG
BS13763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-PA | 852 | CG3124-RA | 293..852 | 576..17 | 2775 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-RA | 1179 | CG3124-RA | 438..997 | 576..17 | 2785 | 99.8 | Minus |
| CG3124-RB | 1206 | CG3124-RB | 438..904 | 576..110 | 2320 | 99.8 | Minus |
| CG3124-RB | 1206 | CG3124-RB | 931..1024 | 110..17 | 470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23283153..23283618 | 111..576 | 2315 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23283017..23283076 | 51..110 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 23282925..23282960 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:19:49 has no hits.
BS13763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:51 Download gff for
BS13763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-PA | 293..852 | 17..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:40 Download gff for
BS13763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 438..997 | 17..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:16 Download gff for
BS13763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 438..997 | 17..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:16 Download gff for
BS13763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23282925..23282959 | 17..51 | 100 | <- | Plus |
| 2R | 23283018..23283076 | 52..110 | 100 | <- | Plus |
| 2R | 23283153..23283618 | 111..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:40 Download gff for
BS13763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19170448..19170482 | 17..51 | 100 | <- | Plus |
| arm_2R | 19170541..19170599 | 52..110 | 100 | <- | Plus |
| arm_2R | 19170676..19171141 | 111..576 | 99 | | Plus |
BS13763.complete Sequence
884 bp assembled on 2010-07-02
GenBank Submission: KX806527
> BS13763.complete
GAAGTTATCAGTCGACATGAATTTTTGTTCAGTGCCTTACGAAGCTGACT
ACGGCATGTACGCCGATTCCAAGATGAAGAGCGTTCCTCAGTACCCCCTG
AGCATGGGAGTCGGTCAGGGTCAAGGACAGTCCATGGCCATGCAGCCCCT
GAATCCACCGCAGATGAATCTGCAGATGCAGATGCCCGTGTGCCAGTCGG
GCGCTTCGTCGTACCCAATGCAGGGTATGCCGCTGGGCATGATGCAAGGG
GGCAATCAGATGACCCCCATGTCCACGATGTCCACCCAGCTGCCGATTGG
AGCGGTGACTCCCCTGAGCAGCATGACCATGATGCCCATGATGGGCAATC
CCATGGGCGCCATCGATGCCCCCGGGATCAATGCAGTGCTGCCTGACCTG
CAGCCGATGACCTCGATGGGTCAGATGCAGCCGCTGCAACAGTACAATCC
CAGTGGATCTACCACCCAAATGCATCAAGGACGTCTGACGGGCGGCTGCA
ATGCTGTGATGTCTGCGCCCTGTCCCTCGTCGCCCTCGCAAGCTGGCGGC
TGGAGCTCCGGTCCCAGCCCCAACCAAATGATGAACAGCTCCAATATGTG
GCAATACAGTCAGCCTATGCAGAGTCACCAGCCGCAGTACCACCAGCAGC
ACCAGCAGCAGCAGCAACAGCAGCAGCAGCACTATCAGCAGCCGAGCCAG
GGACACCAACAGGTCAACCGGATGAAGACCTCCTACGACGCTCCCATGTA
CCGGGATATGCGGAACGGTCTAAACGCACCATCGATACACGATTCATCGA
AGTACAGCAAAGGCAATCAATCATTCAATTGTGGAAAAGCGGTTAGCAAG
GTCCCCCATTGGCGTTGAAAGCTTTCTAGACCAT
BS13763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-RA | 852 | CG3124-PA | 1..852 | 17..868 | 4230 | 99.8 | Plus |
| CG3124-RB | 771 | CG3124-PB | 1..759 | 17..775 | 3765 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-RA | 1179 | CG3124-RA | 146..997 | 17..868 | 4230 | 99.8 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 146..904 | 17..775 | 3765 | 99.7 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 931..1024 | 775..868 | 470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23283153..23283855 | 774..72 | 3485 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23283017..23283076 | 834..775 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 23283912..23283968 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:19:39 has no hits.
BS13763.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:43 Download gff for
BS13763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 146..996 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:41 Download gff for
BS13763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 146..996 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:53 Download gff for
BS13763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 146..996 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:53 Download gff for
BS13763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23282926..23282959 | 834..867 | 100 | <- | Minus |
| 2R | 23283018..23283076 | 775..833 | 100 | <- | Minus |
| 2R | 23283153..23283853 | 74..774 | 99 | <- | Minus |
| 2R | 23283912..23283968 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:41 Download gff for
BS13763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19170541..19170599 | 775..833 | 100 | <- | Minus |
| arm_2R | 19170449..19170482 | 834..867 | 100 | <- | Minus |
| arm_2R | 19170676..19171376 | 74..774 | 99 | <- | Minus |
| arm_2R | 19171435..19171491 | 17..73 | 100 | | Minus |
BS13763.pep Sequence
Translation from 16 to 867
> BS13763.pep
MNFCSVPYEADYGMYADSKMKSVPQYPLSMGVGQGQGQSMAMQPLNPPQM
NLQMQMPVCQSGASSYPMQGMPLGMMQGGNQMTPMSTMSTQLPIGAVTPL
SSMTMMPMMGNPMGAIDAPGINAVLPDLQPMTSMGQMQPLQQYNPSGSTT
QMHQGRLTGGCNAVMSAPCPSSPSQAGGWSSGPSPNQMMNSSNMWQYSQP
MQSHQPQYHQQHQQQQQQQQQHYQQPSQGHQQVNRMKTSYDAPMYRDMRN
GLNAPSIHDSSKYSKGNQSFNCGKAVSKVPHWR*
BS13763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-PA | 283 | CG3124-PA | 1..283 | 1..283 | 1539 | 100 | Plus |
| CG3124-PB | 256 | CG3124-PB | 1..255 | 1..255 | 1377 | 99.6 | Plus |
