Clone Sequence Records
BS13764.3prime Sequence
630 bp (548 high quality bases) assembled on 2006-10-13
> BS13764.3prime
ATGGTCTAGAAAGCTTCTATGTCTTGGCGGCTTGTCGCACCTTATCCTCA
AATTCGTAGGCACCCATAGACCAGATCAGGTTGGCGTCCGTCTCCACCTG
GACGAACTCGGTCGCATAGGTGTTTGAGGTGCTTACCATACCACCAAACT
CCAGCTGTGCATGATATAGGTTCCATTTGAGTCCCGTGGTAGTGACATTG
TGGGCCGACGATCCCACGGGCATCAGAGAGCACCATCGCTGGCTGGTGAC
CAGGTCGACGGGCACCTGTATCGTGTGCTTTCCCGGCCGCAATAACCACG
TCACCGAATCCCCGCTCAACAGGAAGACATTGCAGTTATCCTTTTGCGAT
TTGTACAGCGTGTTTAGGTTGGCCATGACCTGGTCCAAGCGACCGGAAGT
GTCATGAAACACCACCACATCCTGGATTTTACGCTGCGTCATTACGGGTT
GCAGTACGGCCATGGCCTTCGTGAAATCTGTTGCATCCTGGTCGGGTGTG
TGGACTTTCGGCGTGGTCTTGAAGAAATCGACCGTTTCCTCAGTGATCGA
GTCGAAGTCCCCCGTTATCACATCGAGCGGTTCAAGTGGTGCCGTGTGCG
CGGAACCCTTTGGCTTCTTTGACATTGCCT
BS13764.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-PA | 1038 | CG14721-RA | 451..1038 | 604..17 | 2840 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-RB | 1142 | CG14721-RB | 303..917 | 630..16 | 2955 | 98.7 | Minus |
CG14721-RA | 1248 | CG14721-RA | 472..1086 | 630..16 | 2955 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11735979..11736443 | 630..166 | 2205 | 98.3 | Minus |
3R | 32079331 | 3R | 11736499..11736652 | 169..16 | 755 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:51:00 has no hits.
BS13764.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:52 Download gff for
BS13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-PA | 425..1038 | 17..630 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:02 Download gff for
BS13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 472..1086 | 16..630 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:41 Download gff for
BS13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 472..1086 | 16..630 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:41 Download gff for
BS13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11735979..11736443 | 166..630 | 98 | -> | Minus |
3R | 11736503..11736652 | 16..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:02 Download gff for
BS13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7561701..7562165 | 166..630 | 98 | -> | Minus |
arm_3R | 7562225..7562374 | 16..165 | 100 | | Minus |
BS13764.5prime Sequence
593 bp (548 high quality bases) assembled on 2006-10-13
> BS13764.5prime
GAAGTTATCAGTCGACATGATTTTGGTTAAATTATATGGGACGGGCGGCT
GCACAATGACGGCGGCAGGCGCTCCAGGGTCCGCCTTAAATTGGATGCGC
CGCTCTCGCCACGGATTCGGTTTGATCCGAATCACGCGAGTTGGCAGGCC
GGCGCACCAACGCACCACCCATTCCGCCACCCACCGCTTCCTTTGCACAA
AAACAACAATCGGATTTCGGCAGCAAATGGACCACACAATACCGCCCAAA
GAGTACAAATGGACGCCGGGCAACCTGATCAACGAGAACTTTAAGCTGGG
CGACCATGGACACGTTTGCGTGGTGCTCAATCGGCAGATTCAAGTGCCGG
CGCACGTGGTGAAACTGCTATGGAAAAACGCCGCCGTTCGGTGTGCTGTC
GATGGAGGCTCCAACCACTGGCGTGACTTTGTCGTGGCTCAGGCAATGTC
AAAGAAGGCCAATGGCTCCGCGCCCACGACACCACTTGAACCGCTCGATG
TGATAACGGGTGACTTCGACTCGATCACTGAGGAAACGGTCGATTTCTTC
AAGACCACGCCGAAAGTCCACACACCCGACCAGGATGCAACAG
BS13764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-PA | 1038 | CG14721-RA | 1..577 | 17..593 | 2860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-RA | 1248 | CG14721-RA | 48..624 | 17..593 | 2870 | 99.8 | Plus |
CG14721-RB | 1142 | CG14721-RB | 1..455 | 139..593 | 2260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11735494..11735857 | 17..380 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 11735918..11736131 | 380..593 | 1055 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:40:05 has no hits.
BS13764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:52 Download gff for
BS13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-PA | 1..577 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:06 Download gff for
BS13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..624 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:05 Download gff for
BS13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..624 | 17..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:05 Download gff for
BS13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11735494..11735857 | 17..380 | 100 | -> | Plus |
3R | 11735919..11736131 | 381..593 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:06 Download gff for
BS13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7561216..7561579 | 17..380 | 100 | -> | Plus |
arm_3R | 7561641..7561853 | 381..593 | 99 | | Plus |
BS13764.complete Sequence
1070 bp assembled on 2006-11-01
GenBank Submission: FJ637523
> BS13764.complete
GAAGTTATCAGTCGACATGATTTTGGTTAAATTATATGGGACGGGCGGCT
GCACAATGACGGCGGCAGGCGCTCCAGGGTCCGCCTTAAATTGGATGCGC
CGCTCTCGCCACGGATTCGGTTTGATCCGAATCACGCGAGTTGGCAGGCC
GGCGCACCAACGCACCACCCATTCCGCCACCCACCGCTTCCTTTGCACAA
AAACAACAATCGGATTTCGGCAGCAAATGGACCACACAATACCGCCCAAA
GAGTACAAATGGACGCCGGGCAACCTGATCAACGAGAACTTTAAGCTGGG
CGACCATGGACACGTTTGCGTGGTGCTCAATCGGCAGATTCAAGTGCCGG
CGCACGTGGTGAAACTGCTATGGAAAAACGCCGCCGTTCGGTGTGCTGTC
GATGGAGGCTCCAACCACTGGCGTGACTTTGTCGTGGCTCAGGCAATGTC
AAAGAAGGCCAATGGCTCCGCGCCCACGACACCACTTGAACCGCTCGATG
TGATAACGGGTGACTTCGACTCGATCACTGAGGAAACGGTCGATTTCTTC
AAGACCACGCCGAAAGTCCACACACCCGACCAGGATGCAACAGATTTCAC
GAAGGCCATGGCCGTACTGCAACCCGTAATGACGCAGCGTAAAATCCAGG
ATGTGGTGGTGTTTCATGACACTTCCGGTCGCTTGGACCAGGTCATGGCC
AACCTAAACACGCTGTACAAATCGCAAAAGGATAACTGCAATGTCTTCCT
GTTGAGCGGGGATTCGGTGACGTGGTTATTGCGGCCGGGAAAGCACACGA
TACAGGTGCCCGTCGACCTGGTCACCAGCCAGCGATGGTGCTCTCTGATG
CCCGTGGGATCGTCGGCCCACAATGTCACTACCACGGGACTCAAATGGAA
CCTATATCATGCACAGCTGGAGTTTGGTGGTATGGTAAGCACCTCAAACA
CCTATGCGACCGAGTTCGTCCAGGTGGAGACGGACGCCAACCTGATCTGG
TCTATGGGTGCCTACGAATTTGAGGATAAGGTGCGACAAGCCGCCAAGAC
ATAGAAGCTTTCTAGACCAT
BS13764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-RA | 1038 | CG14721-PA | 1..1038 | 17..1054 | 5175 | 99.9 | Plus |
CG14721-RB | 828 | CG14721-PB | 1..828 | 227..1054 | 4125 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-RA | 1248 | CG14721-RA | 48..1086 | 17..1055 | 5180 | 99.9 | Plus |
CG14721-RB | 1142 | CG14721-RB | 1..917 | 139..1055 | 4570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11735918..11736443 | 380..905 | 2615 | 99.8 | Plus |
3R | 32079331 | 3R | 11735494..11735857 | 17..380 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 11736499..11736652 | 902..1055 | 755 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:03:24 has no hits.
BS13764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:57 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 1..1038 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:20 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..1086 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:25 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..1085 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:57 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..1086 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:33 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14721-RA | 48..1085 | 17..1054 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:33 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11735494..11735857 | 17..380 | 100 | -> | Plus |
3R | 11735919..11736443 | 381..905 | 99 | -> | Plus |
3R | 11736503..11736651 | 906..1054 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:25 Download gff for
BS13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7562225..7562373 | 906..1054 | 100 | | Plus |
arm_3R | 7561216..7561579 | 17..380 | 100 | -> | Plus |
arm_3R | 7561641..7562165 | 381..905 | 99 | -> | Plus |
BS13764.pep Sequence
Translation from 16 to 1053
> BS13764.pep
MILVKLYGTGGCTMTAAGAPGSALNWMRRSRHGFGLIRITRVGRPAHQRT
THSATHRFLCTKTTIGFRQQMDHTIPPKEYKWTPGNLINENFKLGDHGHV
CVVLNRQIQVPAHVVKLLWKNAAVRCAVDGGSNHWRDFVVAQAMSKKANG
SAPTTPLEPLDVITGDFDSITEETVDFFKTTPKVHTPDQDATDFTKAMAV
LQPVMTQRKIQDVVVFHDTSGRLDQVMANLNTLYKSQKDNCNVFLLSGDS
VTWLLRPGKHTIQVPVDLVTSQRWCSLMPVGSSAHNVTTTGLKWNLYHAQ
LEFGGMVSTSNTYATEFVQVETDANLIWSMGAYEFEDKVRQAAKT*
BS13764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14721-PA | 345 | CG14721-PA | 1..345 | 1..345 | 1841 | 100 | Plus |
CG14721-PB | 275 | CG14721-PB | 1..275 | 71..345 | 1466 | 100 | Plus |