Clone BS13765 Report

Search the DGRC for BS13765

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRpn8-RA
Protein status:BS13765.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13765.3prime Sequence

560 bp (557 high quality bases) assembled on 2006-10-13

> BS13765.3prime
ATGGTCTAGAAAGCTTCTATTTGCGCGAACCCTTGCCGCCTTCGTCCTTG
CCCTTGTCGGCCTTCTCCTCCGCCTTCTTGCCGTCCTTGTCCTTGGTCTC
CTTGTTGTCCTTATCCTTGCTATCCTTATTCTTCTCCTTGGCCTCCTTGC
TGTCGCTCTTGCCCTCCTCGGCGTCGCGGTTGGCCAGCTTGTTGTTGATC
AGGTTGTGCAGGGCAATGATCGAGCGCACCATGGAGGCCAGGTAGACGAC
CAGCATTTGGTCGTTGGTCTTCACATACATTGTGCCCGTGAACTGGTCAT
TGGTTATATCGGGCAGCAGGTTGAAGATGTCCTGCAGCTGGTAGACAATC
TGGTGGTTGATTGGCATCTTGCTGTCGCCGACGCGCTGCAGATACTGCTT
TATGTCCCGCAGCTGGGCATTCAGGCCTTTCAGACCCATGAGCTGGTTGG
TGATCTTTTGCGACAGGCTGCCCACGGTTGTGTCCTTGATGTCACGCAGC
AGATGCTCCACGCCCACCTCCTCCGCCTCCTCGGCGCCAATCTCGCTGGG
CACATGCTCG

BS13765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3416-PA 1017 Mov34-RA 474..1017 560..17 2695 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-RC 1473 CG3416-RC 676..1223 560..13 2710 99.6 Minus
Rpn8-RB 1456 CG3416-RB 659..1206 560..13 2710 99.6 Minus
Rpn8-RA 1456 CG3416-RA 659..1206 560..13 2710 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24403730..24404277 560..13 2710 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:09:06 has no hits.

BS13765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:52 Download gff for BS13765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3416-PA 474..1017 17..560 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:09 Download gff for BS13765.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 659..1206 13..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:37 Download gff for BS13765.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 659..1206 13..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:37 Download gff for BS13765.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24403730..24404277 13..560 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:09 Download gff for BS13765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20291253..20291800 13..560 99   Minus

BS13765.5prime Sequence

671 bp (597 high quality bases) assembled on 2006-10-13

> BS13765.5prime
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAGATCACC
AAACAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAAA
GCAGTATCTGCAGCGCGTCGG

BS13765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3416-PA 1017 Mov34-RA 1..577 17..593 2835 99.6 Plus
CG3416-PA 1017 Mov34-RA 576..656 591..671 380 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-RC 1473 CG3416-RC 201..858 15..671 3220 99.4 Plus
Rpn8-RB 1456 CG3416-RB 184..841 15..671 3220 99.4 Plus
Rpn8-RA 1456 CG3416-RA 184..841 15..671 3220 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24403429..24403912 189..671 2325 99.2 Plus
2R 25286936 2R 24403188..24403364 15..191 885 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:40:52 has no hits.

BS13765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:53 Download gff for BS13765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3416-PA 1..656 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:10 Download gff for BS13765.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 179..841 9..671 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:11 Download gff for BS13765.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 179..841 9..671 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:11 Download gff for BS13765.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24403183..24403364 9..191 97 -> Plus
2R 24403432..24403912 192..671 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:10 Download gff for BS13765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20290706..20290887 9..191 97 -> Plus
arm_2R 20290955..20291435 192..671 99   Plus

BS13765.complete Sequence

1049 bp assembled on 2006-11-01

GenBank Submission: FJ637524

> BS13765.complete
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAAGATCAC
CAACCAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAA
AGCAGTATCTGCAGCGCGTCGGCGACAGCAAGATGCCAATCAACCACCAG
ATTGTCTACCAGCTGCAGGACATCTTCAACCTGCTGCCCGATATAACCAA
TGACCAGTTCACGGGCACAATGTATGTGAAGACCAACGACCAAATGCTGG
TCGTCTACCTGGCCTCCATGGTGCGCTCGATCATTGCCCTGCACAACCTG
ATCAACAACAAGCTGGCCAACCGCGACGCCGAGGAGGGCAAGAGCGACAG
CAAGGAGGCCAAGGAGAAGAATAAGGATAGCAAGGATAAGGACAACAAGG
AGACCAAGGACAAGGACGGCAAGAAGGCGGAGGAGAAGGCCGACAAGGGC
AAGGACGAAGGCGGCAAGGGTTCGCGCAAATAGAAGCTTTCTAGACCAT

BS13765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-RB 1077 CG3416-PB 1..1021 17..1037 5045 99.6 Plus
Rpn8-RC 1017 CG3416-PC 1..1017 17..1033 5040 99.7 Plus
Rpn8-RA 1017 CG3416-PA 1..1017 17..1033 5040 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-RC 1473 CG3416-RC 201..1223 15..1037 5055 99.6 Plus
Rpn8-RB 1456 CG3416-RB 184..1206 15..1037 5055 99.6 Plus
Rpn8-RA 1456 CG3416-RA 184..1206 15..1037 5055 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24403429..24404277 189..1037 4185 99.5 Plus
2R 25286936 2R 24403188..24403364 15..191 885 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:50:31 has no hits.

BS13765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:58 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1017 17..1033 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:21 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 213..1240 9..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:55 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 186..1196 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:58 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 213..1240 9..1037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:56 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 186..1196 17..1027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:56 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24403190..24403364 17..191 100 -> Plus
2R 24403432..24404267 192..1027 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:55 Download gff for BS13765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20290713..20290887 17..191 100 -> Plus
arm_2R 20290955..20291790 192..1027 99   Plus

BS13765.pep Sequence

Translation from 16 to 1032

> BS13765.pep
MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGV
LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHT
GPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD
GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMG
LKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTG
TMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKE
KNKDSKDKDNKETKDKDGKKAEEKADKGKDEGGKGSRK*

BS13765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-PC 338 CG3416-PC 1..338 1..338 1753 100 Plus
Rpn8-PA 338 CG3416-PA 1..338 1..338 1753 100 Plus
Rpn8-PB 358 CG3416-PB 1..338 1..338 1753 100 Plus
CG9769-PA 280 CG9769-PA 8..271 11..276 259 28.7 Plus
CSN6-PA 341 CG6932-PA 54..321 11..280 223 23 Plus