Clone Sequence Records
BS13765.3prime Sequence
560 bp (557 high quality bases) assembled on 2006-10-13
> BS13765.3prime
ATGGTCTAGAAAGCTTCTATTTGCGCGAACCCTTGCCGCCTTCGTCCTTG
CCCTTGTCGGCCTTCTCCTCCGCCTTCTTGCCGTCCTTGTCCTTGGTCTC
CTTGTTGTCCTTATCCTTGCTATCCTTATTCTTCTCCTTGGCCTCCTTGC
TGTCGCTCTTGCCCTCCTCGGCGTCGCGGTTGGCCAGCTTGTTGTTGATC
AGGTTGTGCAGGGCAATGATCGAGCGCACCATGGAGGCCAGGTAGACGAC
CAGCATTTGGTCGTTGGTCTTCACATACATTGTGCCCGTGAACTGGTCAT
TGGTTATATCGGGCAGCAGGTTGAAGATGTCCTGCAGCTGGTAGACAATC
TGGTGGTTGATTGGCATCTTGCTGTCGCCGACGCGCTGCAGATACTGCTT
TATGTCCCGCAGCTGGGCATTCAGGCCTTTCAGACCCATGAGCTGGTTGG
TGATCTTTTGCGACAGGCTGCCCACGGTTGTGTCCTTGATGTCACGCAGC
AGATGCTCCACGCCCACCTCCTCCGCCTCCTCGGCGCCAATCTCGCTGGG
CACATGCTCG
BS13765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3416-PA | 1017 | Mov34-RA | 474..1017 | 560..17 | 2695 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 676..1223 | 560..13 | 2710 | 99.6 | Minus |
Rpn8-RB | 1456 | CG3416-RB | 659..1206 | 560..13 | 2710 | 99.6 | Minus |
Rpn8-RA | 1456 | CG3416-RA | 659..1206 | 560..13 | 2710 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403730..24404277 | 560..13 | 2710 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:09:06 has no hits.
BS13765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:52 Download gff for
BS13765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3416-PA | 474..1017 | 17..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:09 Download gff for
BS13765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 659..1206 | 13..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:37 Download gff for
BS13765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 659..1206 | 13..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:37 Download gff for
BS13765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403730..24404277 | 13..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:09 Download gff for
BS13765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20291253..20291800 | 13..560 | 99 | | Minus |
BS13765.5prime Sequence
671 bp (597 high quality bases) assembled on 2006-10-13
> BS13765.5prime
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAGATCACC
AAACAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAAA
GCAGTATCTGCAGCGCGTCGG
BS13765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3416-PA | 1017 | Mov34-RA | 1..577 | 17..593 | 2835 | 99.6 | Plus |
CG3416-PA | 1017 | Mov34-RA | 576..656 | 591..671 | 380 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 201..858 | 15..671 | 3220 | 99.4 | Plus |
Rpn8-RB | 1456 | CG3416-RB | 184..841 | 15..671 | 3220 | 99.4 | Plus |
Rpn8-RA | 1456 | CG3416-RA | 184..841 | 15..671 | 3220 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403429..24403912 | 189..671 | 2325 | 99.2 | Plus |
2R | 25286936 | 2R | 24403188..24403364 | 15..191 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:40:52 has no hits.
BS13765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:53 Download gff for
BS13765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3416-PA | 1..656 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:10 Download gff for
BS13765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 179..841 | 9..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:11 Download gff for
BS13765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 179..841 | 9..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:11 Download gff for
BS13765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403183..24403364 | 9..191 | 97 | -> | Plus |
2R | 24403432..24403912 | 192..671 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:10 Download gff for
BS13765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20290706..20290887 | 9..191 | 97 | -> | Plus |
arm_2R | 20290955..20291435 | 192..671 | 99 | | Plus |
BS13765.complete Sequence
1049 bp assembled on 2006-11-01
GenBank Submission: FJ637524
> BS13765.complete
GAAGTTATCAGTCGACATGCCGTCGCAGGAGGTGAGCGTAAACAAAGTGA
TAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGGATG
GGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTGCTG
GCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCTTCG
ACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTACCTG
GAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGTTGT
GGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATTA
ACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATCGAC
GCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGTGGA
GGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATGTGC
CCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCATCTG
CTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAAGATCAC
CAACCAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACATAA
AGCAGTATCTGCAGCGCGTCGGCGACAGCAAGATGCCAATCAACCACCAG
ATTGTCTACCAGCTGCAGGACATCTTCAACCTGCTGCCCGATATAACCAA
TGACCAGTTCACGGGCACAATGTATGTGAAGACCAACGACCAAATGCTGG
TCGTCTACCTGGCCTCCATGGTGCGCTCGATCATTGCCCTGCACAACCTG
ATCAACAACAAGCTGGCCAACCGCGACGCCGAGGAGGGCAAGAGCGACAG
CAAGGAGGCCAAGGAGAAGAATAAGGATAGCAAGGATAAGGACAACAAGG
AGACCAAGGACAAGGACGGCAAGAAGGCGGAGGAGAAGGCCGACAAGGGC
AAGGACGAAGGCGGCAAGGGTTCGCGCAAATAGAAGCTTTCTAGACCAT
BS13765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RB | 1077 | CG3416-PB | 1..1021 | 17..1037 | 5045 | 99.6 | Plus |
Rpn8-RC | 1017 | CG3416-PC | 1..1017 | 17..1033 | 5040 | 99.7 | Plus |
Rpn8-RA | 1017 | CG3416-PA | 1..1017 | 17..1033 | 5040 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-RC | 1473 | CG3416-RC | 201..1223 | 15..1037 | 5055 | 99.6 | Plus |
Rpn8-RB | 1456 | CG3416-RB | 184..1206 | 15..1037 | 5055 | 99.6 | Plus |
Rpn8-RA | 1456 | CG3416-RA | 184..1206 | 15..1037 | 5055 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24403429..24404277 | 189..1037 | 4185 | 99.5 | Plus |
2R | 25286936 | 2R | 24403188..24403364 | 15..191 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:50:31 has no hits.
BS13765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:58 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 1..1017 | 17..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:21 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 213..1240 | 9..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:55 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 186..1196 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:58 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mov34-RA | 213..1240 | 9..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:56 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn8-RA | 186..1196 | 17..1027 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:56 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24403190..24403364 | 17..191 | 100 | -> | Plus |
2R | 24403432..24404267 | 192..1027 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:55 Download gff for
BS13765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20290713..20290887 | 17..191 | 100 | -> | Plus |
arm_2R | 20290955..20291790 | 192..1027 | 99 | | Plus |
BS13765.pep Sequence
Translation from 16 to 1032
> BS13765.pep
MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGV
LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHT
GPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD
GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMG
LKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTG
TMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKE
KNKDSKDKDNKETKDKDGKKAEEKADKGKDEGGKGSRK*
BS13765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn8-PC | 338 | CG3416-PC | 1..338 | 1..338 | 1753 | 100 | Plus |
Rpn8-PA | 338 | CG3416-PA | 1..338 | 1..338 | 1753 | 100 | Plus |
Rpn8-PB | 358 | CG3416-PB | 1..338 | 1..338 | 1753 | 100 | Plus |
CG9769-PA | 280 | CG9769-PA | 8..271 | 11..276 | 259 | 28.7 | Plus |
CSN6-PA | 341 | CG6932-PA | 54..321 | 11..280 | 223 | 23 | Plus |