Clone BS13769 Report

Search the DGRC for BS13769

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG8526-RA
Protein status:BS13769.pep: full length peptide match
Sequenced Size:1850

Clone Sequence Records

BS13769.complete Sequence

1850 bp assembled on 2009-12-07

GenBank Submission: KX801378

> BS13769.complete
GAAGTTATCAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGG
AGGCTCGCGTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGC
AACGAGTCCGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCT
TCAAGAGTTTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATG
ATGGTCCCATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTC
CTTTACGATTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGG
CTTCTGCGACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGT
CCTACGACGGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCC
GCCTCGGCACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATT
CACTGGGGCACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGA
ACTTCTTGGGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTG
CTGGTCTTCTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCT
CAATTCTGACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGG
GTCGGGCGAGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCG
TGCAATATTAAACCATTTTCACTTCATTCGGAACTCGAAAAGAACGTGGC
GCTGCTGCGTATTTACCCGGGAATAAGTGCCAGTGTGGTGCAGGCAATCC
TGAAAGAGCCAACGAAAGGTGTTGTCCTCCAGACCTTTGGGGCCGGCAAT
TTTCCGGTTAATCGTGAGGACTTGCTGGACGAACTGAGGGAGGCGGTTCA
CAGAGGCGTTATTATTGTCAACATTACGCAGTGCTCGGCGGGCATGGTGG
CCAACATTTACGAGACAAGCCAGGGTCTGATGGAAGTGGGCGTAATACCC
GGCTACGATATGACTCAGGAGGCAGCCTTTACCAAACTGGCCTATGTGCT
GTCCAAGCCGGAGTGGGACATTCCCAACAAGAAGAAGGTGATGCTACTAA
GTTTGCGCGGAGAGCTGACCACCAATAAGGTTGCCAAGATTAACGACATT
GATCTGATCGAGGGCGTGGCCCGCACATTGCACATGTCGACGGCGATGGA
ACGGCAGCAGATGTGCTCCACATTCTATCCCGCTTTGGTGGCGGCCGCGG
TCACCGAAGGTGATGTCCACAAGTTGGGCGATCTTAAGCAGTACGGCGCC
AATCTGTGCGACACCAACTGCGATGGTCGCTCCGCCATGCACCTGGCCTG
CTTCCTGGGCAAACTGAACTGCGTTTGCTTTCTAATTTCCGCCGGCTGTC
CGGTAAATGTCCACGATCGATTCAACCGCACGCCGTTGCACGAGGCCATC
GACACGGACAACCATGATATAATCAACGCTCTGCTCAAGAACGGCGCCAA
GCTGAACGATCAGCCGCTGGTCCAGGCGGAGCTACTACGTGCCCTTACCG
AGCGGGGCAAGATCAAGCGATTGGAGTCATTTCGGCTAGCCGGAGCCAAT
CTCACGCTGGCTGATCGGACTGGACGAACGGCTCTGCACTACGCCTGCCA
GTTAGGTAATCACGAGGTGGTAGACTATCTGCTGCCGCACTACGAGAATC
CCTACATCAAGGATGAGCTGGGCATGTCGCCAATCGACTACGCCAAGGCA
GCCAATCATGCCCACATCCTGACCCTGATGCGTTTCAAGGAGAAGGAGCT
GGCCAAGAAAGATCCGTGTTCCTGCACGCAATAGAAGCTTTCTAGACCAT

BS13769.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-RA 1818 CG8526-PA 1..1818 17..1834 9090 100 Plus
CG8526-RB 1815 CG8526-PB 1..1815 17..1834 9010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-RA 2069 CG8526-RA 201..2022 17..1838 9110 100 Plus
CG8526-RB 2066 CG8526-RB 201..2019 17..1838 9030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9801914..9803414 338..1838 7505 100 Plus
3R 32079331 3R 9801627..9801852 112..337 1130 100 Plus
3R 32079331 3R 9801480..9801576 17..113 485 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:05:44 has no hits.

BS13769.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:33 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 143..1960 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:47 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 201..2018 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:21 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 143..1960 17..1834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:52 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 201..2018 17..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:52 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9801480..9801576 17..113 100 -> Plus
3R 9801629..9801852 114..337 100 -> Plus
3R 9801914..9803410 338..1834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:47 Download gff for BS13769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5627202..5627298 17..113 100 -> Plus
arm_3R 5627351..5627574 114..337 100 -> Plus
arm_3R 5627636..5629132 338..1834 100   Plus

BS13769.3prime Sequence

794 bp (717 high quality bases) assembled on 2006-10-13

> BS13769.3prime
ATGGTCTAGAAAGCTTCTATTGCGTGCAGGAACACGGATCTTTCTTGGCC
AGCTCCTTCTCCTTGAAACGCATCAGGGTCAGGATGTGGGCATGATTGGC
TGCCTTGGCGTAGTCGATTGGCGACATGCCCAGCTCATCCTTGATGTAGG
GATTCTCGTAGTGCGGCAGCAGATAGTCTACCACCTCGTGATTACCTAAC
TGGCAGGCGTAGTGCAGAGCCGTTCGTCCAGTCCGATCAGCCAGCGTGAG
ATTGGCTCCGGCTAGCCGAAATGACTCCAATCGCTTGATCTTGCCCCGCT
CGGTAAGGGCACGTAGTAGCTCCGCCTGGACCAGCGGCTGATCGTTCAGC
TTGGCGCCGTTCTTGAGCAGAGCGTTGATTATATCATGGTTGTCCGTGTC
GATGGCCTCGTGCAACGGCGTGCGGTTGAATCGATCGTGGACATTTACCG
GACAGCCGGCGGAAATTAGAAAGCAAACGCAGTTCAGTTTGCCCAGGAAG
CAGGCCAGGTGCATGGCGGAGCGACCATCGCAGTTGGTGTCGCACAGATT
GGCGCCGTACTGCTTAAGATCGCCCAACTTGTGGACATCACCTTCGGTGA
CCGCGGCCGCCACCAAAGCGGGATAGAATGTGGAGCACATCTGCTGCCGT
TCCATCGCCGTCGACATGTGCAATGTGCGGGCCACGCCCTCGATCAGATC
AATGTCGTTAATCTTGGCAACCTTATTGGTGGTCAGCTCTCCGCGCAAAC
TTAGTAGCATCACCTTCTTCTTGTTGGGAATGTCCCACTCCGGC

BS13769.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-PA 1818 CG8526-RA 1041..1818 794..17 3890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-RB 2066 CG8526-RB 1238..2019 794..13 3910 100 Minus
CG8526-RA 2069 CG8526-RA 1241..2022 794..13 3910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9802633..9803414 794..13 3910 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:53 has no hits.

BS13769.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:57 Download gff for BS13769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-PA 1041..1818 17..794 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:15 Download gff for BS13769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 1241..2034 1..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:11 Download gff for BS13769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 1241..2034 1..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:11 Download gff for BS13769.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9802633..9803426 1..794 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:15 Download gff for BS13769.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5628355..5629148 1..794 99   Minus

BS13769.5prime Sequence

877 bp (771 high quality bases) assembled on 2006-10-13

> BS13769.5prime
GAAGTTATCAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGG
AGGCTCGCGTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGC
AACGAGTCCGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCT
TCAAGAGTTTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATG
ATGGTCCCATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTC
CTTTACGATTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGG
CTTCTGCGACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGT
CCTACGACGGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCC
GCCTCGGCACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATT
CACTGGGGCACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGA
ACTTCTTGGGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTG
CTGGTCTTCTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCT
CAATTCTGACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGG
GTCGGGCGAGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCG
TGCAATATTAAACCATTTTCACTTCATTCGGAACTCGAAAAGAACGTGGC
GCTGCTGCGTATTTACCCGGGAATAAGTGCCAGTGTGGTGCAGGCAATCC
TGAAAGAGCCAACGAAAGGTGTTGTCCTCCAGACCTTTGGGGCCGGCAAT
TTTCGGGTAATCGTGAGGACTTGCTGG

BS13769.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-PA 1818 CG8526-RA 1..862 17..877 4245 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-RA 2069 CG8526-RA 201..1062 17..877 4270 99.8 Plus
CG8526-RB 2066 CG8526-RB 201..1059 17..877 4215 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9801914..9802454 338..877 2640 99.6 Plus
3R 32079331 3R 9801627..9801852 112..337 1130 100 Plus
3R 32079331 3R 9801480..9801576 17..113 485 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:10:41 has no hits.

BS13769.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:43:58 Download gff for BS13769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-PA 1..862 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:30 Download gff for BS13769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 201..1062 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:24 Download gff for BS13769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8526-RA 201..1062 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:24 Download gff for BS13769.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9801480..9801576 17..113 100 -> Plus
3R 9801629..9801852 114..337 100 -> Plus
3R 9801914..9802454 338..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:30 Download gff for BS13769.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5627202..5627298 17..113 100 -> Plus
arm_3R 5627351..5627574 114..337 100 -> Plus
arm_3R 5627636..5628176 338..877 99   Plus

BS13769.pep Sequence

Translation from 16 to 1833

> BS13769.pep
MPAAKCGCLKKEARVHVIYVGGTIGMIRNESGVLHTAPKVLARQLQEFPS
CHDRNYTSKDNDGPMMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWK
RIANEVGKTYKSYDGFVILHGTDTLAYSASALAFMLESLNKPVVFTGAQI
PIFEARSDGRENFLGALLIAGNYSIPEVLVFFGNKILRGCRSTKLNSDSF
HALDSPNFAPLGRASVNIEINSRQIFRPCNIKPFSLHSELEKNVALLRIY
PGISASVVQAILKEPTKGVVLQTFGAGNFPVNREDLLDELREAVHRGVII
VNITQCSAGMVANIYETSQGLMEVGVIPGYDMTQEAAFTKLAYVLSKPEW
DIPNKKKVMLLSLRGELTTNKVAKINDIDLIEGVARTLHMSTAMERQQMC
STFYPALVAAAVTEGDVHKLGDLKQYGANLCDTNCDGRSAMHLACFLGKL
NCVCFLISAGCPVNVHDRFNRTPLHEAIDTDNHDIINALLKNGAKLNDQP
LVQAELLRALTERGKIKRLESFRLAGANLTLADRTGRTALHYACQLGNHE
VVDYLLPHYENPYIKDELGMSPIDYAKAANHAHILTLMRFKEKELAKKDP
CSCTQ*

BS13769.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8526-PA 605 CG8526-PA 1..605 1..605 3160 100 Plus
CG8526-PB 604 CG8526-PB 1..604 1..605 3143 99.8 Plus
CG6428-PA 631 CG6428-PA 48..630 11..589 1549 51.5 Plus
Ank-PE 1549 CG1651-PE 460..681 360..588 190 26.6 Plus
Ank-PD 1549 CG1651-PD 460..681 360..588 190 26.6 Plus