Clone BS13772 Report

Search the DGRC for BS13772

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10014-RA
Protein status:BS13772.pep: full length peptide match
Sequenced Size:1298

Clone Sequence Records

BS13772.3prime Sequence

519 bp (469 high quality bases) assembled on 2006-10-13

> BS13772.3prime
ATGGTCTAGAAAGCTTCTACTCAGCTGCGGGAGCTTCTTCTGCGGGAGCT
TCTTCAGCGGGAGGAGCTGCTCCCTCTGTCGGAGCGGGCTCCTCAGCGGG
CGGTGGCGGTGCCGCTGCTTCTTCTGGTGGTGGTGGAGGTGCCGGCTCTT
CGGCGGCTTCCGGTGCAGCCTCTTCTGCTGGCGGTGGGGCAGCCTCCTCA
GCCGGAGCTGGTGCTGCTTCATCAGCAGGCGCCTCTGCTGCAGGAGCTTC
CTCCGCTGGCTGAGCTTCCGCAGCCTCTTCATGAGCTTCTGGCTCTGCTA
TAGCAGTGGCCGAAGTTCTGGCCGTGGCCGGAGCAGTGCCTGGGGCAGAT
GGCGGCACAGTTCCGGGAGCAGTTGGTAATGGTGTTGGTCCGGCTGTTAT
CGCAGCAGTTGTTGGTACTGTCGAGAGATTTACGTCGTCATAGCCATCCT
TTGCTGTATCCGGTGAAGAGCTAGCATCCACTTCAGTTGGTTCCGTTGGT
TCGGCACAGGGGTCTACGA

BS13772.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-PA 1266 CG10014-RA 764..1266 519..17 2490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-RA 1448 CG10014-RA 860..1363 519..16 2505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12223460..12223963 519..16 2505 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:52:33 has no hits.

BS13772.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for BS13772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-PA 765..1266 17..518 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:30 Download gff for BS13772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 861..1363 16..518 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:01 Download gff for BS13772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 861..1363 16..518 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:01 Download gff for BS13772.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12223461..12223963 16..518 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:30 Download gff for BS13772.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8049183..8049685 16..518 99   Minus

BS13772.5prime Sequence

535 bp (431 high quality bases) assembled on 2006-10-13

> BS13772.5prime
GAAGTTATCAGTCGACATGAATTACTTGATACAGCGTGGCAAGATGCGCC
AGCAGGCGATTAATGTTCCAGAGGGTCTGCCGGAACTTCTATCAGATGTT
ACACGGGAGGTGCTAAGGTGTCAGCCGAAGAAAGAGTGCCTCTGCCAGTT
CATCATCGACTATCTACATTCGGTGATCGTGACAAGGGAAAAGGCTATGG
TGGCCAAGACCATTTTGGATCGCTCTCTGCGCCAGGTGGACAGCATAATA
TCGGACCTCTGTGTCTGTGATCTCTCCAAGGAGAAGTCCGAGTTGATGGG
CCAGGTTCTAGAGGACTGTTTCCGTAACTTCCTCGAGAAACGACGCTGCG
AGATGCGGCGTGGCAAGCAGGCGATTAAGTTCGAGGATGTGGACATCCTA
GAGGAGCTGCTGCAGAAGTGCAAGTTTACCGACGAGGAGCTGGTCATGTC
ACGGCCGGCCATCGAGAGTGCCTACAAGCGCTTCGTGGACGCCTATATGT
CCGCCGAACGTGGAGCCGATGGAACGGAGCTACTC

BS13772.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-PA 1266 CG10014-RA 1..519 17..535 2570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-RA 1448 CG10014-RA 97..615 17..535 2580 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12222733..12223068 200..535 1680 100 Plus
3R 32079331 3R 12222483..12222666 17..200 905 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:02 has no hits.

BS13772.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for BS13772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-PA 1..519 17..535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:11 Download gff for BS13772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 97..615 17..535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:07 Download gff for BS13772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 97..615 17..535 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:07 Download gff for BS13772.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12222483..12222666 17..200 99 -> Plus
3R 12222734..12223068 201..535 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:11 Download gff for BS13772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8048205..8048388 17..200 99 -> Plus
arm_3R 8048456..8048790 201..535 100   Plus

BS13772.complete Sequence

1298 bp assembled on 2009-08-24

GenBank Submission: KX803323

> BS13772.complete
GAAGTTATCAGTCGACATGAATTACTTGATACAGCGTGGCAAGATGCGCC
AGCAGGCGATTAATGTTCCAGAGGGTCTGCCGGAACTTCTATCAGATGTT
ACACGGGAGGTGCTAAGGTGTCAGCCGAAGAAAGAGTGCCTCTGCCAGTT
CATCATCGACTATCTACATTCGGTGATCGTGACAAGGGAAAAGGCTATGG
TGGCCAAGACCATTTTGGATCGCTCTCTGCGCCAGGTGGACAGCATAATA
TCGGACCTCTGTGTCTGTGATCTCTCCAAGGAGAAGTCCGAGTTGATGGG
CCAGGTTCTAGAGGACTGTTTCCGTAACTTCCTCGAGAAACGACGCTGCG
AGATGCGGCGTGGCAAGCAGGCGATTAAGTTCGAGGATGTGGACATCCTA
GAGGAGCTGCTGCAGAAGTGCAAGTTTACCGACGAGGAGCTGGTCATGTC
ACGGCCGGCCATCGAGAGTGCCTACAAGCGCTTCGTGGACGCCTATATGT
CCGCCGAACGTGGAGCCGATGGAACGGAGCTACTCTACCAGTACTTCCGG
GACAGGGAACTGAAGCGTATCAACGAGGCCATGCGCAACCAGGCAGCCAT
CACGATCCAGGCGGCTTGGCGAGGATACTGGGTTCGCCTCCAGTTCCCGC
AAGAAGTTTGCGTTTGTGTCTGCGCAGCGGAAAAAGAGGACGACGGGGAG
GAAAAGCGCAGGGAACAGGCAGCGAGCGTTCTTCAGAGATTCTTCCGCAA
GGTTATGTTGCGCGTGGTTACCAAGCCAATCGTAGACCCCTGTGCCGAAC
CAACGGAACCAACTGAAGTGGATGCTAGCTCTTCACCGGATACAGCAAAG
GATGGCTATGACGACGTAAATCTCTCGACAGTACCAACAACTGCTGCGAT
AACAGCCGGACCAACACCATTACCAACTGCTCCCGGAACTGTGCCGCCAT
CTGCCCCAGGCACTGCTCCGGCCACGGCCAGAACTTCGGCCACTGCTATA
GCAGAGCCAGAAGCTCATGAAGAGGCTGCGGAAGCTCAGCCAGCGGAGGA
AGCTCCTGCAGCAGAGGCGCCTGCTGATGAAGCAGCACCAGCTCCGGCTG
AGGAGGCTGCCCCACCGCCAGCAGAAGAGGCTGCACCGGAAGCCGCCGAA
GAGCCGGCACCTCCACCACCACCAGAAGAAGCAGCGGCACCGCCACCGCC
CGCTGAGGAGCCCGCTCCGACAGAGGGAGCAGCTCCTCCCGCTGAAGAAG
CTCCCGCAGAAGAAGCTCCCGCAGCTGAGTAGAAGCTTTCTAGACCAT

BS13772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-RA 1266 CG10014-PA 1..1266 17..1282 6300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-RA 1448 CG10014-RA 97..1363 17..1283 6305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12223440..12223963 760..1283 2605 99.8 Plus
3R 32079331 3R 12222733..12223213 200..680 2405 100 Plus
3R 32079331 3R 12222483..12222666 17..200 905 99.5 Plus
3R 32079331 3R 12223272..12223353 679..760 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:28:58 has no hits.

BS13772.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:55 Download gff for BS13772.complete
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 97..1362 17..1282 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:54 Download gff for BS13772.complete
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 97..1362 17..1282 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:36 Download gff for BS13772.complete
Subject Subject Range Query Range Percent Splice Strand
CG10014-RA 97..1362 17..1282 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:36 Download gff for BS13772.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12222483..12222666 17..200 99 -> Plus
3R 12222734..12223212 201..679 100 -> Plus
3R 12223273..12223353 680..760 100 -> Plus
3R 12223441..12223962 761..1282 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:54 Download gff for BS13772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8048205..8048388 17..200 99 -> Plus
arm_3R 8048456..8048934 201..679 100 -> Plus
arm_3R 8048995..8049075 680..760 100 -> Plus
arm_3R 8049163..8049684 761..1282 99   Plus

BS13772.pep Sequence

Translation from 16 to 1281

> BS13772.pep
MNYLIQRGKMRQQAINVPEGLPELLSDVTREVLRCQPKKECLCQFIIDYL
HSVIVTREKAMVAKTILDRSLRQVDSIISDLCVCDLSKEKSELMGQVLED
CFRNFLEKRRCEMRRGKQAIKFEDVDILEELLQKCKFTDEELVMSRPAIE
SAYKRFVDAYMSAERGADGTELLYQYFRDRELKRINEAMRNQAAITIQAA
WRGYWVRLQFPQEVCVCVCAAEKEDDGEEKRREQAASVLQRFFRKVMLRV
VTKPIVDPCAEPTEPTEVDASSSPDTAKDGYDDVNLSTVPTTAAITAGPT
PLPTAPGTVPPSAPGTAPATARTSATAIAEPEAHEEAAEAQPAEEAPAAE
APADEAAPAPAEEAAPPPAEEAAPEAAEEPAPPPPPEEAAAPPPPAEEPA
PTEGAAPPAEEAPAEEAPAAE*

BS13772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10014-PA 421 CG10014-PA 1..421 1..421 2176 100 Plus
Tm1-PF 501 CG4898-PF 354..497 287..421 210 46.3 Plus
Tm1-PF 501 CG4898-PF 343..501 260..420 209 41.7 Plus
Tm1-PK 518 CG4898-PK 319..510 260..420 189 39.2 Plus
CG18130-PA 706 CG18130-PA 582..684 312..418 186 48.6 Plus
CG10869-PA 659 CG10869-PA 78..155 335..418 184 52.4 Plus
Tm1-PK 518 CG4898-PK 366..518 258..409 183 40.7 Plus
Tm1-PK 518 CG4898-PK 295..490 253..421 182 36.4 Plus
CG18130-PA 706 CG18130-PA 583..682 324..421 169 49.1 Plus
CG18130-PA 706 CG18130-PA 594..706 310..421 163 47.1 Plus