Clone Sequence Records
BS13772.3prime Sequence
519 bp (469 high quality bases) assembled on 2006-10-13
> BS13772.3prime
ATGGTCTAGAAAGCTTCTACTCAGCTGCGGGAGCTTCTTCTGCGGGAGCT
TCTTCAGCGGGAGGAGCTGCTCCCTCTGTCGGAGCGGGCTCCTCAGCGGG
CGGTGGCGGTGCCGCTGCTTCTTCTGGTGGTGGTGGAGGTGCCGGCTCTT
CGGCGGCTTCCGGTGCAGCCTCTTCTGCTGGCGGTGGGGCAGCCTCCTCA
GCCGGAGCTGGTGCTGCTTCATCAGCAGGCGCCTCTGCTGCAGGAGCTTC
CTCCGCTGGCTGAGCTTCCGCAGCCTCTTCATGAGCTTCTGGCTCTGCTA
TAGCAGTGGCCGAAGTTCTGGCCGTGGCCGGAGCAGTGCCTGGGGCAGAT
GGCGGCACAGTTCCGGGAGCAGTTGGTAATGGTGTTGGTCCGGCTGTTAT
CGCAGCAGTTGTTGGTACTGTCGAGAGATTTACGTCGTCATAGCCATCCT
TTGCTGTATCCGGTGAAGAGCTAGCATCCACTTCAGTTGGTTCCGTTGGT
TCGGCACAGGGGTCTACGA
BS13772.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-PA | 1266 | CG10014-RA | 764..1266 | 519..17 | 2490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-RA | 1448 | CG10014-RA | 860..1363 | 519..16 | 2505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12223460..12223963 | 519..16 | 2505 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:52:33 has no hits.
BS13772.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for
BS13772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-PA | 765..1266 | 17..518 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:30 Download gff for
BS13772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 861..1363 | 16..518 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:01 Download gff for
BS13772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 861..1363 | 16..518 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:01 Download gff for
BS13772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12223461..12223963 | 16..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:30 Download gff for
BS13772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8049183..8049685 | 16..518 | 99 | | Minus |
BS13772.5prime Sequence
535 bp (431 high quality bases) assembled on 2006-10-13
> BS13772.5prime
GAAGTTATCAGTCGACATGAATTACTTGATACAGCGTGGCAAGATGCGCC
AGCAGGCGATTAATGTTCCAGAGGGTCTGCCGGAACTTCTATCAGATGTT
ACACGGGAGGTGCTAAGGTGTCAGCCGAAGAAAGAGTGCCTCTGCCAGTT
CATCATCGACTATCTACATTCGGTGATCGTGACAAGGGAAAAGGCTATGG
TGGCCAAGACCATTTTGGATCGCTCTCTGCGCCAGGTGGACAGCATAATA
TCGGACCTCTGTGTCTGTGATCTCTCCAAGGAGAAGTCCGAGTTGATGGG
CCAGGTTCTAGAGGACTGTTTCCGTAACTTCCTCGAGAAACGACGCTGCG
AGATGCGGCGTGGCAAGCAGGCGATTAAGTTCGAGGATGTGGACATCCTA
GAGGAGCTGCTGCAGAAGTGCAAGTTTACCGACGAGGAGCTGGTCATGTC
ACGGCCGGCCATCGAGAGTGCCTACAAGCGCTTCGTGGACGCCTATATGT
CCGCCGAACGTGGAGCCGATGGAACGGAGCTACTC
BS13772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-PA | 1266 | CG10014-RA | 1..519 | 17..535 | 2570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-RA | 1448 | CG10014-RA | 97..615 | 17..535 | 2580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12222733..12223068 | 200..535 | 1680 | 100 | Plus |
3R | 32079331 | 3R | 12222483..12222666 | 17..200 | 905 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:02 has no hits.
BS13772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for
BS13772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-PA | 1..519 | 17..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:11 Download gff for
BS13772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 97..615 | 17..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:07 Download gff for
BS13772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 97..615 | 17..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:07 Download gff for
BS13772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12222483..12222666 | 17..200 | 99 | -> | Plus |
3R | 12222734..12223068 | 201..535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:11 Download gff for
BS13772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8048205..8048388 | 17..200 | 99 | -> | Plus |
arm_3R | 8048456..8048790 | 201..535 | 100 | | Plus |
BS13772.complete Sequence
1298 bp assembled on 2009-08-24
GenBank Submission: KX803323
> BS13772.complete
GAAGTTATCAGTCGACATGAATTACTTGATACAGCGTGGCAAGATGCGCC
AGCAGGCGATTAATGTTCCAGAGGGTCTGCCGGAACTTCTATCAGATGTT
ACACGGGAGGTGCTAAGGTGTCAGCCGAAGAAAGAGTGCCTCTGCCAGTT
CATCATCGACTATCTACATTCGGTGATCGTGACAAGGGAAAAGGCTATGG
TGGCCAAGACCATTTTGGATCGCTCTCTGCGCCAGGTGGACAGCATAATA
TCGGACCTCTGTGTCTGTGATCTCTCCAAGGAGAAGTCCGAGTTGATGGG
CCAGGTTCTAGAGGACTGTTTCCGTAACTTCCTCGAGAAACGACGCTGCG
AGATGCGGCGTGGCAAGCAGGCGATTAAGTTCGAGGATGTGGACATCCTA
GAGGAGCTGCTGCAGAAGTGCAAGTTTACCGACGAGGAGCTGGTCATGTC
ACGGCCGGCCATCGAGAGTGCCTACAAGCGCTTCGTGGACGCCTATATGT
CCGCCGAACGTGGAGCCGATGGAACGGAGCTACTCTACCAGTACTTCCGG
GACAGGGAACTGAAGCGTATCAACGAGGCCATGCGCAACCAGGCAGCCAT
CACGATCCAGGCGGCTTGGCGAGGATACTGGGTTCGCCTCCAGTTCCCGC
AAGAAGTTTGCGTTTGTGTCTGCGCAGCGGAAAAAGAGGACGACGGGGAG
GAAAAGCGCAGGGAACAGGCAGCGAGCGTTCTTCAGAGATTCTTCCGCAA
GGTTATGTTGCGCGTGGTTACCAAGCCAATCGTAGACCCCTGTGCCGAAC
CAACGGAACCAACTGAAGTGGATGCTAGCTCTTCACCGGATACAGCAAAG
GATGGCTATGACGACGTAAATCTCTCGACAGTACCAACAACTGCTGCGAT
AACAGCCGGACCAACACCATTACCAACTGCTCCCGGAACTGTGCCGCCAT
CTGCCCCAGGCACTGCTCCGGCCACGGCCAGAACTTCGGCCACTGCTATA
GCAGAGCCAGAAGCTCATGAAGAGGCTGCGGAAGCTCAGCCAGCGGAGGA
AGCTCCTGCAGCAGAGGCGCCTGCTGATGAAGCAGCACCAGCTCCGGCTG
AGGAGGCTGCCCCACCGCCAGCAGAAGAGGCTGCACCGGAAGCCGCCGAA
GAGCCGGCACCTCCACCACCACCAGAAGAAGCAGCGGCACCGCCACCGCC
CGCTGAGGAGCCCGCTCCGACAGAGGGAGCAGCTCCTCCCGCTGAAGAAG
CTCCCGCAGAAGAAGCTCCCGCAGCTGAGTAGAAGCTTTCTAGACCAT
BS13772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-RA | 1266 | CG10014-PA | 1..1266 | 17..1282 | 6300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-RA | 1448 | CG10014-RA | 97..1363 | 17..1283 | 6305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12223440..12223963 | 760..1283 | 2605 | 99.8 | Plus |
3R | 32079331 | 3R | 12222733..12223213 | 200..680 | 2405 | 100 | Plus |
3R | 32079331 | 3R | 12222483..12222666 | 17..200 | 905 | 99.5 | Plus |
3R | 32079331 | 3R | 12223272..12223353 | 679..760 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:28:58 has no hits.
BS13772.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:55 Download gff for
BS13772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 97..1362 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:54 Download gff for
BS13772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 97..1362 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:36 Download gff for
BS13772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10014-RA | 97..1362 | 17..1282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:36 Download gff for
BS13772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12222483..12222666 | 17..200 | 99 | -> | Plus |
3R | 12222734..12223212 | 201..679 | 100 | -> | Plus |
3R | 12223273..12223353 | 680..760 | 100 | -> | Plus |
3R | 12223441..12223962 | 761..1282 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:54 Download gff for
BS13772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8048205..8048388 | 17..200 | 99 | -> | Plus |
arm_3R | 8048456..8048934 | 201..679 | 100 | -> | Plus |
arm_3R | 8048995..8049075 | 680..760 | 100 | -> | Plus |
arm_3R | 8049163..8049684 | 761..1282 | 99 | | Plus |
BS13772.pep Sequence
Translation from 16 to 1281
> BS13772.pep
MNYLIQRGKMRQQAINVPEGLPELLSDVTREVLRCQPKKECLCQFIIDYL
HSVIVTREKAMVAKTILDRSLRQVDSIISDLCVCDLSKEKSELMGQVLED
CFRNFLEKRRCEMRRGKQAIKFEDVDILEELLQKCKFTDEELVMSRPAIE
SAYKRFVDAYMSAERGADGTELLYQYFRDRELKRINEAMRNQAAITIQAA
WRGYWVRLQFPQEVCVCVCAAEKEDDGEEKRREQAASVLQRFFRKVMLRV
VTKPIVDPCAEPTEPTEVDASSSPDTAKDGYDDVNLSTVPTTAAITAGPT
PLPTAPGTVPPSAPGTAPATARTSATAIAEPEAHEEAAEAQPAEEAPAAE
APADEAAPAPAEEAAPPPAEEAAPEAAEEPAPPPPPEEAAAPPPPAEEPA
PTEGAAPPAEEAPAEEAPAAE*
BS13772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10014-PA | 421 | CG10014-PA | 1..421 | 1..421 | 2176 | 100 | Plus |
Tm1-PF | 501 | CG4898-PF | 354..497 | 287..421 | 210 | 46.3 | Plus |
Tm1-PF | 501 | CG4898-PF | 343..501 | 260..420 | 209 | 41.7 | Plus |
Tm1-PK | 518 | CG4898-PK | 319..510 | 260..420 | 189 | 39.2 | Plus |
CG18130-PA | 706 | CG18130-PA | 582..684 | 312..418 | 186 | 48.6 | Plus |
CG10869-PA | 659 | CG10869-PA | 78..155 | 335..418 | 184 | 52.4 | Plus |
Tm1-PK | 518 | CG4898-PK | 366..518 | 258..409 | 183 | 40.7 | Plus |
Tm1-PK | 518 | CG4898-PK | 295..490 | 253..421 | 182 | 36.4 | Plus |
CG18130-PA | 706 | CG18130-PA | 583..682 | 324..421 | 169 | 49.1 | Plus |
CG18130-PA | 706 | CG18130-PA | 594..706 | 310..421 | 163 | 47.1 | Plus |