Clone Sequence Records
BS13773.3prime Sequence
686 bp (529 high quality bases) assembled on 2006-10-13
> BS13773.3prime
ATGGTCTAGAAAGCTTTTAAACTGGATTGCCTTCTGGTGGCACTGCGCTC
CATCGCCTATGGGTCTCCCTTTCCATCCGCTTCTGCCTGGCCATCAGCGC
ATTCACCTCGCGATCCATTTCCAGCGGCGGGACAACTGCGATCTCTGCGT
AATTGGGCAAGGTAGTGCACACCCTGTTCGCACAGGCTTTCTGGAATTGC
TTGGTTAGATCGTCGGAAATGTTGGCCACACACAAATTGGTTAATAAGTC
AAAGGCTGTGACTTTGAGGGCTTCAAATTGCTTTCGTGTCTTTCCCGTCA
CTTGCTTCCTTATTATTTTCTTCATTGTGATGGACCCCGAAGACAATTTT
CTAGGATCATGGACAGCTAGCGTCTTTTTGGTGTCAACTATCAGTTTGCG
ATTACGCACTTCCACCTTCATGGTGGGAGACGGCACCTTGGTGGATGATA
CCCACGAGCTCTTTTTCTTCTTCTGAAGAGGAGACCACACTGGTGTGGCC
TTTGCTTTGCTGGCGGTTTCCACTCGTTTACGAGTATATGTCCGTACGGC
GGTCAATTTGGGCTTAGTCTTGTTGATGGCGAGTTCCATCGCTTGGTGGT
TCTGCTCGGTTAGATTCTCTCTCGGCAAGACTGGCGGTGAGATCCCAGTC
TCATAGATGGCTTGAGGGCGTAATGTTGTTACGGGG
BS13773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-PA | 1254 | CG8712-RA | 587..1254 | 685..17 | 3305 | 99.8 | Minus |
CG8712-PB | 1254 | CG8712-RB | 587..1254 | 685..17 | 3305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-RB | 1693 | CG8712-RB | 751..1419 | 685..16 | 3325 | 99.9 | Minus |
CG8712-RA | 1489 | CG8712-RA | 692..1360 | 685..16 | 3325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8097066..8097734 | 16..685 | 3300 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 16:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4129..4169 | 278..319 | 117 | 78.6 | Plus |
BS13773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for
BS13773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-PB | 586..1254 | 17..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:11 Download gff for
BS13773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 691..1360 | 16..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:48 Download gff for
BS13773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 691..1360 | 16..686 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:48 Download gff for
BS13773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8097066..8097734 | 16..686 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:11 Download gff for
BS13773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3984571..3985239 | 16..686 | 99 | | Plus |
BS13773.5prime Sequence
351 bp (257 high quality bases) assembled on 2006-10-13
> BS13773.5prime
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAACACCCCGACGAATACAT
C
BS13773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-PA | 1254 | CG8712-RA | 1..335 | 17..351 | 1650 | 99.7 | Plus |
CG8712-PB | 1254 | CG8712-RB | 1..335 | 17..351 | 1650 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-RB | 1693 | CG8712-RB | 165..499 | 17..351 | 1660 | 99.7 | Plus |
CG8712-RA | 1489 | CG8712-RA | 106..440 | 17..351 | 1660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8097986..8098320 | 351..17 | 1660 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:43:19 has no hits.
BS13773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:01 Download gff for
BS13773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-PB | 1..335 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:08 Download gff for
BS13773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 100..440 | 10..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:21 Download gff for
BS13773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 100..440 | 10..351 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:21 Download gff for
BS13773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8097986..8098326 | 10..351 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:08 Download gff for
BS13773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3985491..3985831 | 10..351 | 98 | | Minus |
BS13773.complete Sequence
1286 bp assembled on 2010-05-13
GenBank Submission: KX803962
> BS13773.complete
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAGCACCCCGACGAATACAT
CTTCTTTAAGAGCTCGGGCTGGTAAGGAAAACGCTGTTCCGCAGCTAACG
CCAGAGGGTTTGCGATGCCGACCCTTTCACCTACCTGCACCGGTGGAAAT
GGACGTAGACCAATTGTGCTGCCAGGAGCAGACACCTGAGAGACGGGCAT
CCTCCAAGTCTATAAGTTCAGCTAATACAAATAATAGTTTTTTTGAGAAT
GAGGTATCACAGCCAGTAATTTCAAGCAAGAACGTCTATGCCAACGAATC
GGCCCGTAACAACATTACGCCCTCAAGCATCTATGAGACTGGGATCTCAC
CGCCAGTCTTGCCGAGAGAGAATCTAACCGAGCAGAACCACCAAGCGATG
GAACTCGCCATCAACAAGACTAAGCCCAAATTGACCGCCGTACGGACATA
TACTCGTAAACGAGTGGAAACCGCCAGCAAAGCAAAGGCCACACCAGTGT
GGTCTCCTCTTCAGAAGAAGAAAAAGAGCTCGTGGGTATCATCCACCAAG
GTGCCGTCTCCCACCATGAAGGTGGAAGTGCGTAATCGCAAACTGATAGT
TGACACCAAAAAGACGCTAGCTGTCCATGATCCTAGAAAATTGTCTTCGG
GGTCCATCACAATGAAGAAAATAATAAGGAAGCAAGTGACGGGAAAGACA
CGAAAGCAATTTGAAGCCCTCAAAGTCACAGCCTTTGACTTATTAACCAA
TTTGTGTGTGGCCAACATTTCCGACGATCTAACCAAGCAATTCCAGAAAG
CCTGTGCGAACAGGGTGTGCACTACCTTGCCCAATTACGCAGAGATCGCA
GTTGTCCCGCCGCTGGAAATGGATCGCGAGGTGAATGCGCTGATGGCCAG
GCAGAAGCGGATGGAAAGGGAGACCCATAGGCGATGGAGCGCAGTGCCAC
CAGAAGGCAATCCAGTTTAAAAGCTTTCTAGACCAT
BS13773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-RB | 1254 | CG8712-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
CG8712-RA | 1254 | CG8712-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-RB | 1693 | CG8712-RB | 165..1419 | 17..1271 | 6275 | 100 | Plus |
CG8712-RA | 1489 | CG8712-RA | 106..1360 | 17..1271 | 6275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8097066..8098320 | 1271..17 | 6275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4129..4169 | 1009..968 | 117 | 78.6 | Minus |
BS13773.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:43 Download gff for
BS13773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RB | 135..1386 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:46 Download gff for
BS13773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 106..1357 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:11 Download gff for
BS13773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8712-RA | 106..1357 | 17..1268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:11 Download gff for
BS13773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8097069..8098320 | 17..1268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:46 Download gff for
BS13773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3984574..3985825 | 17..1268 | 100 | | Minus |
BS13773.pep Sequence
Translation from 16 to 1269
> BS13773.pep
MPALTHQILTMQRAPPLNLSFKIQLLSGQNVILVECSGYESELFLPQIVG
ERITMQNVIQDRRCCAESMLLRDPPMGDLGSETRTAKSPPRRFFAAANPP
TPLAKSTPTNTSSLRARAGKENAVPQLTPEGLRCRPFHLPAPVEMDVDQL
CCQEQTPERRASSKSISSANTNNSFFENEVSQPVISSKNVYANESARNNI
TPSSIYETGISPPVLPRENLTEQNHQAMELAINKTKPKLTAVRTYTRKRV
ETASKAKATPVWSPLQKKKKSSWVSSTKVPSPTMKVEVRNRKLIVDTKKT
LAVHDPRKLSSGSITMKKIIRKQVTGKTRKQFEALKVTAFDLLTNLCVAN
ISDDLTKQFQKACANRVCTTLPNYAEIAVVPPLEMDREVNALMARQKRME
RETHRRWSAVPPEGNPV*
BS13773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8712-PB | 417 | CG8712-PB | 1..417 | 1..417 | 2141 | 100 | Plus |
CG8712-PA | 417 | CG8712-PA | 1..417 | 1..417 | 2141 | 100 | Plus |