Clone BS13773 Report

Search the DGRC for BS13773

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG8712-RA
Protein status:BS13773.pep: full length peptide match
Sequenced Size:1286

Clone Sequence Records

BS13773.3prime Sequence

686 bp (529 high quality bases) assembled on 2006-10-13

> BS13773.3prime
ATGGTCTAGAAAGCTTTTAAACTGGATTGCCTTCTGGTGGCACTGCGCTC
CATCGCCTATGGGTCTCCCTTTCCATCCGCTTCTGCCTGGCCATCAGCGC
ATTCACCTCGCGATCCATTTCCAGCGGCGGGACAACTGCGATCTCTGCGT
AATTGGGCAAGGTAGTGCACACCCTGTTCGCACAGGCTTTCTGGAATTGC
TTGGTTAGATCGTCGGAAATGTTGGCCACACACAAATTGGTTAATAAGTC
AAAGGCTGTGACTTTGAGGGCTTCAAATTGCTTTCGTGTCTTTCCCGTCA
CTTGCTTCCTTATTATTTTCTTCATTGTGATGGACCCCGAAGACAATTTT
CTAGGATCATGGACAGCTAGCGTCTTTTTGGTGTCAACTATCAGTTTGCG
ATTACGCACTTCCACCTTCATGGTGGGAGACGGCACCTTGGTGGATGATA
CCCACGAGCTCTTTTTCTTCTTCTGAAGAGGAGACCACACTGGTGTGGCC
TTTGCTTTGCTGGCGGTTTCCACTCGTTTACGAGTATATGTCCGTACGGC
GGTCAATTTGGGCTTAGTCTTGTTGATGGCGAGTTCCATCGCTTGGTGGT
TCTGCTCGGTTAGATTCTCTCTCGGCAAGACTGGCGGTGAGATCCCAGTC
TCATAGATGGCTTGAGGGCGTAATGTTGTTACGGGG

BS13773.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-PA 1254 CG8712-RA 587..1254 685..17 3305 99.8 Minus
CG8712-PB 1254 CG8712-RB 587..1254 685..17 3305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-RB 1693 CG8712-RB 751..1419 685..16 3325 99.9 Minus
CG8712-RA 1489 CG8712-RA 692..1360 685..16 3325 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8097066..8097734 16..685 3300 99.9 Plus
Blast to na_te.dros performed 2015-02-13 16:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4129..4169 278..319 117 78.6 Plus

BS13773.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:00 Download gff for BS13773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-PB 586..1254 17..686 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:11 Download gff for BS13773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 691..1360 16..686 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:48 Download gff for BS13773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 691..1360 16..686 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:48 Download gff for BS13773.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8097066..8097734 16..686 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:11 Download gff for BS13773.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3984571..3985239 16..686 99   Plus

BS13773.5prime Sequence

351 bp (257 high quality bases) assembled on 2006-10-13

> BS13773.5prime
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAACACCCCGACGAATACAT
C

BS13773.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-PA 1254 CG8712-RA 1..335 17..351 1650 99.7 Plus
CG8712-PB 1254 CG8712-RB 1..335 17..351 1650 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-RB 1693 CG8712-RB 165..499 17..351 1660 99.7 Plus
CG8712-RA 1489 CG8712-RA 106..440 17..351 1660 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8097986..8098320 351..17 1660 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 16:43:19 has no hits.

BS13773.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:01 Download gff for BS13773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-PB 1..335 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:08 Download gff for BS13773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 100..440 10..351 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:21 Download gff for BS13773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 100..440 10..351 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:21 Download gff for BS13773.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8097986..8098326 10..351 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:08 Download gff for BS13773.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3985491..3985831 10..351 98   Minus

BS13773.complete Sequence

1286 bp assembled on 2010-05-13

GenBank Submission: KX803962

> BS13773.complete
GAAGTTATCAGTCGACATGCCGGCACTTACCCACCAAATCTTAACCATGC
AACGCGCACCACCACTGAATTTGAGCTTCAAGATTCAGCTGCTGTCCGGC
CAAAATGTTATCCTGGTGGAGTGTTCTGGCTACGAGAGCGAGCTGTTCTT
GCCGCAAATCGTTGGGGAGCGAATCACCATGCAGAACGTTATTCAAGATC
GAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGATCCCCCGATGGGCGAT
TTGGGCTCCGAAACCAGGACTGCGAAGAGTCCTCCACGGCGCTTCTTTGC
CGCTGCCAATCCCCCAACCCCACTGGCCAAGAGCACCCCGACGAATACAT
CTTCTTTAAGAGCTCGGGCTGGTAAGGAAAACGCTGTTCCGCAGCTAACG
CCAGAGGGTTTGCGATGCCGACCCTTTCACCTACCTGCACCGGTGGAAAT
GGACGTAGACCAATTGTGCTGCCAGGAGCAGACACCTGAGAGACGGGCAT
CCTCCAAGTCTATAAGTTCAGCTAATACAAATAATAGTTTTTTTGAGAAT
GAGGTATCACAGCCAGTAATTTCAAGCAAGAACGTCTATGCCAACGAATC
GGCCCGTAACAACATTACGCCCTCAAGCATCTATGAGACTGGGATCTCAC
CGCCAGTCTTGCCGAGAGAGAATCTAACCGAGCAGAACCACCAAGCGATG
GAACTCGCCATCAACAAGACTAAGCCCAAATTGACCGCCGTACGGACATA
TACTCGTAAACGAGTGGAAACCGCCAGCAAAGCAAAGGCCACACCAGTGT
GGTCTCCTCTTCAGAAGAAGAAAAAGAGCTCGTGGGTATCATCCACCAAG
GTGCCGTCTCCCACCATGAAGGTGGAAGTGCGTAATCGCAAACTGATAGT
TGACACCAAAAAGACGCTAGCTGTCCATGATCCTAGAAAATTGTCTTCGG
GGTCCATCACAATGAAGAAAATAATAAGGAAGCAAGTGACGGGAAAGACA
CGAAAGCAATTTGAAGCCCTCAAAGTCACAGCCTTTGACTTATTAACCAA
TTTGTGTGTGGCCAACATTTCCGACGATCTAACCAAGCAATTCCAGAAAG
CCTGTGCGAACAGGGTGTGCACTACCTTGCCCAATTACGCAGAGATCGCA
GTTGTCCCGCCGCTGGAAATGGATCGCGAGGTGAATGCGCTGATGGCCAG
GCAGAAGCGGATGGAAAGGGAGACCCATAGGCGATGGAGCGCAGTGCCAC
CAGAAGGCAATCCAGTTTAAAAGCTTTCTAGACCAT

BS13773.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-RB 1254 CG8712-PB 1..1254 17..1270 6270 100 Plus
CG8712-RA 1254 CG8712-PA 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-RB 1693 CG8712-RB 165..1419 17..1271 6275 100 Plus
CG8712-RA 1489 CG8712-RA 106..1360 17..1271 6275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8097066..8098320 1271..17 6275 100 Minus
Blast to na_te.dros performed 2014-11-28 02:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4129..4169 1009..968 117 78.6 Minus

BS13773.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:43 Download gff for BS13773.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 135..1386 17..1268 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:46 Download gff for BS13773.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 106..1357 17..1268 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:11 Download gff for BS13773.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 106..1357 17..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:11 Download gff for BS13773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8097069..8098320 17..1268 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:46 Download gff for BS13773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3984574..3985825 17..1268 100   Minus

BS13773.pep Sequence

Translation from 16 to 1269

> BS13773.pep
MPALTHQILTMQRAPPLNLSFKIQLLSGQNVILVECSGYESELFLPQIVG
ERITMQNVIQDRRCCAESMLLRDPPMGDLGSETRTAKSPPRRFFAAANPP
TPLAKSTPTNTSSLRARAGKENAVPQLTPEGLRCRPFHLPAPVEMDVDQL
CCQEQTPERRASSKSISSANTNNSFFENEVSQPVISSKNVYANESARNNI
TPSSIYETGISPPVLPRENLTEQNHQAMELAINKTKPKLTAVRTYTRKRV
ETASKAKATPVWSPLQKKKKSSWVSSTKVPSPTMKVEVRNRKLIVDTKKT
LAVHDPRKLSSGSITMKKIIRKQVTGKTRKQFEALKVTAFDLLTNLCVAN
ISDDLTKQFQKACANRVCTTLPNYAEIAVVPPLEMDREVNALMARQKRME
RETHRRWSAVPPEGNPV*

BS13773.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-PB 417 CG8712-PB 1..417 1..417 2141 100 Plus
CG8712-PA 417 CG8712-PA 1..417 1..417 2141 100 Plus