Clone Sequence Records
BS13775.complete Sequence
605 bp assembled on 2010-02-09
GenBank Submission: KX805889
> BS13775.complete
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTTAAAAGCTTTCTAG
ACCAT
BS13775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fh-RA | 573 | CG8971-PA | 1..573 | 17..589 | 2850 | 99.8 | Plus |
| fh-RB | 573 | CG8971-PB | 1..573 | 17..585 | 2755 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fh-RA | 923 | CG8971-RA | 60..632 | 17..589 | 2850 | 99.8 | Plus |
| fh-RB | 927 | CG8971-RB | 60..636 | 17..589 | 2775 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9148694..9149012 | 335..17 | 1595 | 100 | Minus |
| X | 23542271 | X | 9148371..9148625 | 589..335 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:25:11 has no hits.
BS13775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:54 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:10 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 54..618 | 23..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:58 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 66..630 | 23..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:04 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 54..618 | 23..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:18 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 66..630 | 23..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:18 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9148373..9148625 | 335..587 | 99 | <- | Minus |
| X | 9148695..9149006 | 23..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:58 Download gff for
BS13775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9042728..9043039 | 23..334 | 100 | | Minus |
| arm_X | 9042406..9042658 | 335..587 | 99 | <- | Minus |
BS13775.3prime Sequence
603 bp (600 high quality bases) assembled on 2006-10-13
> BS13775.3prime
ATGGTCTAGAAAGCTTTTAACTACAGTAGGGCAGGCGTAGGAAGTCCACG
GACTGTGACTTCAGTATGCCGGGTATCTCCTGCTGCAACAGTTCGTGCAG
CGACTGACCACTGTGCTTGTAGATCCATCTGCCCGCCGCCACAGTGCCGA
CGAAATCGTATCGCTTGGGACCGCTGGTGGGCGAACTGAGCCAGATCTGC
TTGTTGGGCGTCTGCCGGTTGATCACATAGGTGCCGTGCTGTCCTCCCAG
GTTCACGGTTAGCACGCCATCGCTGTAAGCCACATCCGTGCCCTGCAGCT
CGGAGGCGTTCTCCGTCAGCTCCTCGAAGTAGTCGCACAGTGCGTCCAGG
GTGTCGGAGCACACACGCTCGTAGGTGGCGCCGTCCAATGTGGATTCCGT
CTCAATTTGACTGCTAAACAATCGCCGGTTGGCAGTGAATTCCTCGCATT
GAATAGCAACTGCGGCTATCGCTGGTGTGCTGGGCAGGATCACTTGGCTG
GCGTGTGCTTGGGGCTTTGACCACCTGCCCATGGTGGCCAAGCATGCCCG
ACCAACGATCGAACGGACCATCAAACGACCGGCAAACATGTCGACTGATA
ACT
BS13775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8971-PA | 573 | fh-RA | 1..573 | 589..17 | 2840 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fh-RA | 923 | CG8971-RA | 60..632 | 589..17 | 2850 | 99.8 | Minus |
| fh-RB | 927 | CG8971-RB | 60..636 | 589..17 | 2800 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9148694..9149012 | 271..589 | 1595 | 100 | Plus |
| X | 23542271 | X | 9148371..9148625 | 17..271 | 1260 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:15:14 has no hits.
BS13775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:02 Download gff for
BS13775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8971-PA | 1..573 | 17..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:24 Download gff for
BS13775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 60..632 | 17..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:43 Download gff for
BS13775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 60..632 | 17..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:43 Download gff for
BS13775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9148371..9148625 | 17..271 | 99 | <- | Plus |
| X | 9148695..9149012 | 272..589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:24 Download gff for
BS13775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9042404..9042658 | 17..271 | 99 | <- | Plus |
| arm_X | 9042728..9043045 | 272..589 | 100 | | Plus |
BS13775.5prime Sequence
603 bp (597 high quality bases) assembled on 2006-10-13
> BS13775.5prime
GAAGTTATCAGTCGACATGTTTGCCGGTCGTTTGATGGTCCGTTCGATCG
TTGGTCGGGCATGCTTGGCCACCATGGGCAGGTGGTCAAAGCCCCAAGCA
CACGCCAGCCAAGTGATCCTGCCCAGCACACCAGCGATAGCCGCAGTTGC
TATTCAATGCGAGGAATTCACTGCCAACCGGCGATTGTTTAGCAGTCAAA
TTGAGACGGAATCCACATTGGACGGCGCCACCTACGAGCGTGTGTGCTCC
GACACCCTGGACGCACTGTGCGACTACTTCGAGGAGCTGACGGAGAACGC
CTCCGAGCTGCAGGGCACGGATGTGGCTTACAGCGATGGCGTGCTAACCG
TGAACCTGGGAGGACAGCACGGCACCTATGTGATCAACCGGCAGACGCCC
AACAAGCAGATCTGGCTCAGTTCGCCCACCAGCGGTCCCAAGCGATACGA
TTTCGTCGGCACTGTGGCGGCGGGCAGATGGATCTACAAGCACAGTGGTC
AGTCGCTGCACGAACTGTTGCAGCAGGAGATACCCGGCATACTGAAGTCA
CAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTTAAAAGCTTTCTAG
ACC
BS13775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8971-PA | 573 | fh-RA | 1..573 | 17..589 | 2840 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fh-RA | 923 | CG8971-RA | 60..632 | 17..589 | 2850 | 99.8 | Plus |
| fh-RB | 927 | CG8971-RB | 60..636 | 17..589 | 2800 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9148694..9149012 | 335..17 | 1595 | 100 | Minus |
| X | 23542271 | X | 9148371..9148625 | 589..335 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:52:54 has no hits.
BS13775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:02 Download gff for
BS13775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8971-PA | 1..573 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:34 Download gff for
BS13775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 60..632 | 17..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:49 Download gff for
BS13775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fh-RA | 60..632 | 17..589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:49 Download gff for
BS13775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9148371..9148625 | 335..589 | 99 | <- | Minus |
| X | 9148695..9149012 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:34 Download gff for
BS13775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9042404..9042658 | 335..589 | 99 | <- | Minus |
| arm_X | 9042728..9043045 | 17..334 | 100 | | Minus |
BS13775.pep Sequence
Translation from 16 to 588
> BS13775.pep
MFAGRLMVRSIVGRACLATMGRWSKPQAHASQVILPSTPAIAAVAIQCEE
FTANRRLFSSQIETESTLDGATYERVCSDTLDALCDYFEELTENASELQG
TDVAYSDGVLTVNLGGQHGTYVINRQTPNKQIWLSSPTSGPKRYDFVGTV
AAGRWIYKHSGQSLHELLQQEIPGILKSQSVDFLRLPYCS*
BS13775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fh-PA | 190 | CG8971-PA | 1..190 | 1..190 | 989 | 100 | Plus |
| fh-PB | 190 | CG8971-PB | 1..108 | 1..108 | 542 | 99.1 | Plus |
