Clone BS13780 Report

Search the DGRC for BS13780

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG7804-RA
Protein status:BS13780.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13780.5prime Sequence

579 bp (577 high quality bases) assembled on 2006-10-13

> BS13780.5prime
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAA

BS13780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-PA 957 CG7804-RA 1..563 17..579 2815 100 Plus
CG10327-PB 1596 TBPH-RB 200..342 216..358 365 90.2 Plus
CG10327-PC 1596 TBPH-RC 200..342 216..358 365 90.2 Plus
CG10327-PA 999 TBPH-RA 200..342 216..358 365 90.2 Plus
CG10327-PD 1596 TBPH-RD 200..342 216..358 365 90.2 Plus
CG10327-PB 1596 TBPH-RB 6..92 22..108 310 94.2 Plus
CG10327-PC 1596 TBPH-RC 6..92 22..108 310 94.2 Plus
CG10327-PA 999 TBPH-RA 6..92 22..108 310 94.2 Plus
CG10327-PD 1596 TBPH-RD 6..92 22..108 310 94.2 Plus
CG10327-PB 1596 TBPH-RB 410..487 426..503 265 93.5 Plus
CG10327-PC 1596 TBPH-RC 410..487 426..503 265 93.5 Plus
CG10327-PA 999 TBPH-RA 410..487 426..503 265 93.5 Plus
CG10327-PD 1596 TBPH-RD 410..487 426..503 265 93.5 Plus
CG10327-PB 1596 TBPH-RB 113..193 129..209 230 91.3 Plus
CG10327-PC 1596 TBPH-RC 113..193 129..209 230 91.3 Plus
CG10327-PA 999 TBPH-RA 113..193 129..209 230 91.3 Plus
CG10327-PD 1596 TBPH-RD 113..193 129..209 230 91.3 Plus
CG10327-PB 1596 TBPH-RB 517..561 533..577 150 93.3 Plus
CG10327-PC 1596 TBPH-RC 517..561 533..577 150 93.3 Plus
CG10327-PA 999 TBPH-RA 517..561 533..577 150 93.3 Plus
CG10327-PD 1596 TBPH-RD 517..561 533..577 150 93.3 Plus
CG10327-PB 1596 TBPH-RB 367..395 383..411 145 100 Plus
CG10327-PC 1596 TBPH-RC 367..395 383..411 145 100 Plus
CG10327-PA 999 TBPH-RA 367..395 383..411 145 100 Plus
CG10327-PD 1596 TBPH-RD 367..395 383..411 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-RB 1782 CG7804-RB 401..963 17..579 2815 100 Plus
CG7804-RA 1722 CG7804-RA 341..903 17..579 2815 100 Plus
TBPH-RF 1930 CG10327-RF 119..679 17..577 1740 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15473016..15473578 579..17 2815 100 Minus
2R 25286936 2R 23860835..23861143 566..258 900 86.1 Minus
2R 25286936 2R 23861207..23861446 256..17 810 89.2 Minus
Blast to na_te.dros performed on 2015-02-02 18:03:16 has no hits.

BS13780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:07 Download gff for BS13780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:08 Download gff for BS13780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..901 17..577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:15 Download gff for BS13780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..901 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:15 Download gff for BS13780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15473018..15473578 17..577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:08 Download gff for BS13780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15466118..15466678 17..577 100   Minus

BS13780.3prime Sequence

586 bp (583 high quality bases) assembled on 2006-10-13

> BS13780.3prime
ATGGTCTAGAAAGCTTCTAGTTCATGACGCGATTCATTTGGTAACCATGT
GGATTAAATGAATGCATGCTAAAGTTGTTGGCTGGGTGCATTCTAAAGTT
GTTGGCCGGTTGCATCTTAAAGTTGTTGTCCAAATTGTTGTAGTTGTTGG
TCTGGAACAGTTGGTTTTTGTTCTGCACGTTCTTTTTGTCAGCAGTCGAC
ACATGGACCGAAACTCCCTTGATTATGTGTTTCTCTCCGCACACGACGCG
TGGTACATACGGATCGAGAAAGGTTACAAAGCTAAAAGCCCTGAAGGGCT
TGGGAATGAACACGTCGATCACTTCGCCAAACTTTGAGAAGTACTCGCGC
AAGTCATCCGCCTCTATGTCCTCGGTGCAGCGGCCGACGAATACCTTGCC
AGGCTCCTGATTGCCCATGCCCCTCGAGGCGGGCACCTTAACCTCGCACC
AGCGACCATCAATTGAATGGCGCTTAGAGAGTACGTGCATCTGGACATCG
TAAGAGCCGAAGCGCACGAACCCGAAACCCTTGGAGTGGCCCGACCTGGT
GTCCTTCTTGATCTCAGCCTTCACCACATCGCCGTA

BS13780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-PA 957 CG7804-RA 388..957 586..17 2850 100 Minus
CG10327-PB 1596 TBPH-RB 410..487 564..487 265 93.5 Minus
CG10327-PC 1596 TBPH-RC 410..487 564..487 265 93.5 Minus
CG10327-PA 999 TBPH-RA 410..487 564..487 265 93.5 Minus
CG10327-PD 1596 TBPH-RD 410..487 564..487 265 93.5 Minus
CG10327-PB 1596 TBPH-RB 517..608 457..366 235 90.2 Minus
CG10327-PC 1596 TBPH-RC 517..608 457..366 235 90.2 Minus
CG10327-PA 999 TBPH-RA 517..608 457..366 235 90.2 Minus
CG10327-PD 1596 TBPH-RD 517..608 457..366 235 90.2 Minus
CG10327-PB 1596 TBPH-RB 661..704 313..270 145 93.1 Minus
CG10327-PB 1596 TBPH-RB 731..784 243..190 145 90.7 Minus
CG10327-PC 1596 TBPH-RC 661..704 313..270 145 93.1 Minus
CG10327-PC 1596 TBPH-RC 731..784 243..190 145 90.7 Minus
CG10327-PA 999 TBPH-RA 661..704 313..270 145 93.1 Minus
CG10327-PA 999 TBPH-RA 731..784 243..190 145 90.7 Minus
CG10327-PD 1596 TBPH-RD 661..704 313..270 145 93.1 Minus
CG10327-PD 1596 TBPH-RD 731..784 243..190 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-RB 1782 CG7804-RB 788..1358 586..16 2855 100 Minus
CG7804-RA 1722 CG7804-RA 728..1298 586..16 2855 100 Minus
TBPH-RF 1930 CG10327-RF 506..955 586..137 1170 84.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15472621..15473191 16..586 2855 100 Plus
2R 25286936 2R 23860570..23860776 216..422 510 83.1 Plus
2R 25286936 2R 23860835..23860997 424..586 485 86.5 Plus
2R 25286936 2R 23860436..23860513 137..214 195 83.3 Plus
Blast to na_te.dros performed on 2015-02-03 06:41:22 has no hits.

BS13780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:07 Download gff for BS13780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-PA 389..957 17..585 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:31 Download gff for BS13780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 729..1298 16..585 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:41 Download gff for BS13780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 729..1298 16..585 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:41 Download gff for BS13780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15472621..15473190 16..585 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:31 Download gff for BS13780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15465721..15466290 16..585 100   Plus

BS13780.complete Sequence

989 bp assembled on 2006-11-01

GenBank Submission: FJ637526

> BS13780.complete
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAATCAGGAGCCTGGCAAGGTATT
CGTCGGCCGCTGCACCGAGGACATAGAGGCGGATGACTTGCGCGAGTACT
TCTCAAAGTTTGGCGAAGTGATCGACGTGTTCATTCCCAAGCCCTTCAGG
GCTTTTAGCTTTGTAACCTTTCTCGATCCGTATGTACCACGCGTCGTGTG
CGGAGAGAAACACATAATCAAGGGAGTTTCGGTCCATGTGTCGACTGCTG
ACAAAAAGAACGTGCAGAACAAAAACCAACTGTTCCAGACCAACAACTAC
AACAATTTGGACAACAACTTTAAGATGCAACCGGCCAACAACTTTAGAAT
GCACCCAGCCAACAACTTTAGCATGCATTCATTTAATCCACATGGTTACC
AAATGAATCGCGTCATGAACTAGAAGCTTTCTAGACCAT

BS13780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-RB 957 CG7804-PB 1..957 17..973 4785 100 Plus
CG7804-RA 957 CG7804-PA 1..957 17..973 4785 100 Plus
TBPH-RF 1596 CG10327-PF 1..837 17..853 2385 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-RB 1782 CG7804-RB 401..1358 17..974 4790 100 Plus
CG7804-RA 1722 CG7804-RA 341..1298 17..974 4790 100 Plus
TBPH-RF 1930 CG10327-RF 119..955 17..853 2385 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15472621..15473578 974..17 4790 100 Minus
2R 25286936 2R 23860835..23861143 566..258 900 86.1 Minus
2R 25286936 2R 23861207..23861446 256..17 810 89.2 Minus
2R 25286936 2R 23860570..23860776 774..568 510 83.1 Minus
2R 25286936 2R 23860436..23860513 853..776 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:48:30 has no hits.

BS13780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:01 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 1..957 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:24 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..1298 17..974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:24 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..1297 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:01 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..1298 17..974 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:27 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
CG7804-RA 341..1297 17..973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:27 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15472622..15473578 17..973 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:24 Download gff for BS13780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15465722..15466678 17..973 100   Minus

BS13780.pep Sequence

Translation from 16 to 972

> BS13780.pep
MVFVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAV
RGVRSNEGRLYSPSEETGWGEYHYFCVFPKKNKRQSEDNLENSTAKTKRT
EAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGF
GFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCT
EDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHI
IKGVSVHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPANNFRMHPANN
FSMHSFNPHGYQMNRVMN*

BS13780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7804-PB 318 CG7804-PB 1..318 1..318 1702 100 Plus
CG7804-PA 318 CG7804-PA 1..318 1..318 1702 100 Plus
TBPH-PA 332 CG10327-PA 1..297 1..314 1186 72.9 Plus
TBPH-PF 531 CG10327-PF 1..297 1..314 1186 72.9 Plus
TBPH-PE 531 CG10327-PE 1..297 1..314 1186 72.9 Plus