Clone Sequence Records
BS13780.5prime Sequence
579 bp (577 high quality bases) assembled on 2006-10-13
> BS13780.5prime
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAA
BS13780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-PA | 957 | CG7804-RA | 1..563 | 17..579 | 2815 | 100 | Plus |
CG10327-PB | 1596 | TBPH-RB | 200..342 | 216..358 | 365 | 90.2 | Plus |
CG10327-PC | 1596 | TBPH-RC | 200..342 | 216..358 | 365 | 90.2 | Plus |
CG10327-PA | 999 | TBPH-RA | 200..342 | 216..358 | 365 | 90.2 | Plus |
CG10327-PD | 1596 | TBPH-RD | 200..342 | 216..358 | 365 | 90.2 | Plus |
CG10327-PB | 1596 | TBPH-RB | 6..92 | 22..108 | 310 | 94.2 | Plus |
CG10327-PC | 1596 | TBPH-RC | 6..92 | 22..108 | 310 | 94.2 | Plus |
CG10327-PA | 999 | TBPH-RA | 6..92 | 22..108 | 310 | 94.2 | Plus |
CG10327-PD | 1596 | TBPH-RD | 6..92 | 22..108 | 310 | 94.2 | Plus |
CG10327-PB | 1596 | TBPH-RB | 410..487 | 426..503 | 265 | 93.5 | Plus |
CG10327-PC | 1596 | TBPH-RC | 410..487 | 426..503 | 265 | 93.5 | Plus |
CG10327-PA | 999 | TBPH-RA | 410..487 | 426..503 | 265 | 93.5 | Plus |
CG10327-PD | 1596 | TBPH-RD | 410..487 | 426..503 | 265 | 93.5 | Plus |
CG10327-PB | 1596 | TBPH-RB | 113..193 | 129..209 | 230 | 91.3 | Plus |
CG10327-PC | 1596 | TBPH-RC | 113..193 | 129..209 | 230 | 91.3 | Plus |
CG10327-PA | 999 | TBPH-RA | 113..193 | 129..209 | 230 | 91.3 | Plus |
CG10327-PD | 1596 | TBPH-RD | 113..193 | 129..209 | 230 | 91.3 | Plus |
CG10327-PB | 1596 | TBPH-RB | 517..561 | 533..577 | 150 | 93.3 | Plus |
CG10327-PC | 1596 | TBPH-RC | 517..561 | 533..577 | 150 | 93.3 | Plus |
CG10327-PA | 999 | TBPH-RA | 517..561 | 533..577 | 150 | 93.3 | Plus |
CG10327-PD | 1596 | TBPH-RD | 517..561 | 533..577 | 150 | 93.3 | Plus |
CG10327-PB | 1596 | TBPH-RB | 367..395 | 383..411 | 145 | 100 | Plus |
CG10327-PC | 1596 | TBPH-RC | 367..395 | 383..411 | 145 | 100 | Plus |
CG10327-PA | 999 | TBPH-RA | 367..395 | 383..411 | 145 | 100 | Plus |
CG10327-PD | 1596 | TBPH-RD | 367..395 | 383..411 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-RB | 1782 | CG7804-RB | 401..963 | 17..579 | 2815 | 100 | Plus |
CG7804-RA | 1722 | CG7804-RA | 341..903 | 17..579 | 2815 | 100 | Plus |
TBPH-RF | 1930 | CG10327-RF | 119..679 | 17..577 | 1740 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15473016..15473578 | 579..17 | 2815 | 100 | Minus |
2R | 25286936 | 2R | 23860835..23861143 | 566..258 | 900 | 86.1 | Minus |
2R | 25286936 | 2R | 23861207..23861446 | 256..17 | 810 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:03:16 has no hits.
BS13780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:07 Download gff for
BS13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:08 Download gff for
BS13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..901 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:15 Download gff for
BS13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..901 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:15 Download gff for
BS13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15473018..15473578 | 17..577 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:08 Download gff for
BS13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15466118..15466678 | 17..577 | 100 | | Minus |
BS13780.3prime Sequence
586 bp (583 high quality bases) assembled on 2006-10-13
> BS13780.3prime
ATGGTCTAGAAAGCTTCTAGTTCATGACGCGATTCATTTGGTAACCATGT
GGATTAAATGAATGCATGCTAAAGTTGTTGGCTGGGTGCATTCTAAAGTT
GTTGGCCGGTTGCATCTTAAAGTTGTTGTCCAAATTGTTGTAGTTGTTGG
TCTGGAACAGTTGGTTTTTGTTCTGCACGTTCTTTTTGTCAGCAGTCGAC
ACATGGACCGAAACTCCCTTGATTATGTGTTTCTCTCCGCACACGACGCG
TGGTACATACGGATCGAGAAAGGTTACAAAGCTAAAAGCCCTGAAGGGCT
TGGGAATGAACACGTCGATCACTTCGCCAAACTTTGAGAAGTACTCGCGC
AAGTCATCCGCCTCTATGTCCTCGGTGCAGCGGCCGACGAATACCTTGCC
AGGCTCCTGATTGCCCATGCCCCTCGAGGCGGGCACCTTAACCTCGCACC
AGCGACCATCAATTGAATGGCGCTTAGAGAGTACGTGCATCTGGACATCG
TAAGAGCCGAAGCGCACGAACCCGAAACCCTTGGAGTGGCCCGACCTGGT
GTCCTTCTTGATCTCAGCCTTCACCACATCGCCGTA
BS13780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-PA | 957 | CG7804-RA | 388..957 | 586..17 | 2850 | 100 | Minus |
CG10327-PB | 1596 | TBPH-RB | 410..487 | 564..487 | 265 | 93.5 | Minus |
CG10327-PC | 1596 | TBPH-RC | 410..487 | 564..487 | 265 | 93.5 | Minus |
CG10327-PA | 999 | TBPH-RA | 410..487 | 564..487 | 265 | 93.5 | Minus |
CG10327-PD | 1596 | TBPH-RD | 410..487 | 564..487 | 265 | 93.5 | Minus |
CG10327-PB | 1596 | TBPH-RB | 517..608 | 457..366 | 235 | 90.2 | Minus |
CG10327-PC | 1596 | TBPH-RC | 517..608 | 457..366 | 235 | 90.2 | Minus |
CG10327-PA | 999 | TBPH-RA | 517..608 | 457..366 | 235 | 90.2 | Minus |
CG10327-PD | 1596 | TBPH-RD | 517..608 | 457..366 | 235 | 90.2 | Minus |
CG10327-PB | 1596 | TBPH-RB | 661..704 | 313..270 | 145 | 93.1 | Minus |
CG10327-PB | 1596 | TBPH-RB | 731..784 | 243..190 | 145 | 90.7 | Minus |
CG10327-PC | 1596 | TBPH-RC | 661..704 | 313..270 | 145 | 93.1 | Minus |
CG10327-PC | 1596 | TBPH-RC | 731..784 | 243..190 | 145 | 90.7 | Minus |
CG10327-PA | 999 | TBPH-RA | 661..704 | 313..270 | 145 | 93.1 | Minus |
CG10327-PA | 999 | TBPH-RA | 731..784 | 243..190 | 145 | 90.7 | Minus |
CG10327-PD | 1596 | TBPH-RD | 661..704 | 313..270 | 145 | 93.1 | Minus |
CG10327-PD | 1596 | TBPH-RD | 731..784 | 243..190 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-RB | 1782 | CG7804-RB | 788..1358 | 586..16 | 2855 | 100 | Minus |
CG7804-RA | 1722 | CG7804-RA | 728..1298 | 586..16 | 2855 | 100 | Minus |
TBPH-RF | 1930 | CG10327-RF | 506..955 | 586..137 | 1170 | 84.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15472621..15473191 | 16..586 | 2855 | 100 | Plus |
2R | 25286936 | 2R | 23860570..23860776 | 216..422 | 510 | 83.1 | Plus |
2R | 25286936 | 2R | 23860835..23860997 | 424..586 | 485 | 86.5 | Plus |
2R | 25286936 | 2R | 23860436..23860513 | 137..214 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:41:22 has no hits.
BS13780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:07 Download gff for
BS13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-PA | 389..957 | 17..585 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:31 Download gff for
BS13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 729..1298 | 16..585 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:41 Download gff for
BS13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 729..1298 | 16..585 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:41 Download gff for
BS13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15472621..15473190 | 16..585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:31 Download gff for
BS13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15465721..15466290 | 16..585 | 100 | | Plus |
BS13780.complete Sequence
989 bp assembled on 2006-11-01
GenBank Submission: FJ637526
> BS13780.complete
GAAGTTATCAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCC
ACACTGCAGGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGT
GGACACGAAGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATT
CGCCCAGCGAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTT
CCCAAGAAGAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGC
CAAAACCAAGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGC
TCGGCTTGTCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAG
ACCTACGGCGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGG
CCACTCCAAGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGA
TGCACGTACTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTT
AAGGTGCCCGCCTCGAGGGGCATGGGCAATCAGGAGCCTGGCAAGGTATT
CGTCGGCCGCTGCACCGAGGACATAGAGGCGGATGACTTGCGCGAGTACT
TCTCAAAGTTTGGCGAAGTGATCGACGTGTTCATTCCCAAGCCCTTCAGG
GCTTTTAGCTTTGTAACCTTTCTCGATCCGTATGTACCACGCGTCGTGTG
CGGAGAGAAACACATAATCAAGGGAGTTTCGGTCCATGTGTCGACTGCTG
ACAAAAAGAACGTGCAGAACAAAAACCAACTGTTCCAGACCAACAACTAC
AACAATTTGGACAACAACTTTAAGATGCAACCGGCCAACAACTTTAGAAT
GCACCCAGCCAACAACTTTAGCATGCATTCATTTAATCCACATGGTTACC
AAATGAATCGCGTCATGAACTAGAAGCTTTCTAGACCAT
BS13780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-RB | 957 | CG7804-PB | 1..957 | 17..973 | 4785 | 100 | Plus |
CG7804-RA | 957 | CG7804-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
TBPH-RF | 1596 | CG10327-PF | 1..837 | 17..853 | 2385 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-RB | 1782 | CG7804-RB | 401..1358 | 17..974 | 4790 | 100 | Plus |
CG7804-RA | 1722 | CG7804-RA | 341..1298 | 17..974 | 4790 | 100 | Plus |
TBPH-RF | 1930 | CG10327-RF | 119..955 | 17..853 | 2385 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15472621..15473578 | 974..17 | 4790 | 100 | Minus |
2R | 25286936 | 2R | 23860835..23861143 | 566..258 | 900 | 86.1 | Minus |
2R | 25286936 | 2R | 23861207..23861446 | 256..17 | 810 | 89.2 | Minus |
2R | 25286936 | 2R | 23860570..23860776 | 774..568 | 510 | 83.1 | Minus |
2R | 25286936 | 2R | 23860436..23860513 | 853..776 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:30 has no hits.
BS13780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:01 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:24 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..1298 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:24 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..1297 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:01 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..1298 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:27 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7804-RA | 341..1297 | 17..973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:27 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15472622..15473578 | 17..973 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:24 Download gff for
BS13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15465722..15466678 | 17..973 | 100 | | Minus |
BS13780.pep Sequence
Translation from 16 to 972
> BS13780.pep
MVFVHVSEKEGDEPIELPAEEDGTLLLSTLQAQFPESSGLQYRNVDTKAV
RGVRSNEGRLYSPSEETGWGEYHYFCVFPKKNKRQSEDNLENSTAKTKRT
EAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGF
GFVRFGSYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCT
EDIEADDLREYFSKFGEVIDVFIPKPFRAFSFVTFLDPYVPRVVCGEKHI
IKGVSVHVSTADKKNVQNKNQLFQTNNYNNLDNNFKMQPANNFRMHPANN
FSMHSFNPHGYQMNRVMN*
BS13780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7804-PB | 318 | CG7804-PB | 1..318 | 1..318 | 1702 | 100 | Plus |
CG7804-PA | 318 | CG7804-PA | 1..318 | 1..318 | 1702 | 100 | Plus |
TBPH-PA | 332 | CG10327-PA | 1..297 | 1..314 | 1186 | 72.9 | Plus |
TBPH-PF | 531 | CG10327-PF | 1..297 | 1..314 | 1186 | 72.9 | Plus |
TBPH-PE | 531 | CG10327-PE | 1..297 | 1..314 | 1186 | 72.9 | Plus |