Clone Sequence Records
BS13781.complete Sequence
1250 bp assembled on 2009-12-07
GenBank Submission: KX805344
> BS13781.complete
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
GGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGAC
AATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGAT
GCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCA
AGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGC
GGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAA
CTTCGAGTACTACACAATGAATTTGTATGGCCGGGTCCTTCGCTGCAATC
TGGTTGTTTCCAAGGAGCGCAAGGAGGTGCGAATTTTCTATCGCACATAC
AAGAATGTCGTGCACATCTTCACCCAGCAATGTTTCAACGATGAGCTCCA
GGATGTGGCCGAGACCTTCATGACTCCTGAGGGCCGGATTGTTCTGCATT
ATTGGCGTGGCTATAACTACCTTTTGCATGCCGCCTGCATGCCACCGAAG
AGAAAGGAACCTATCCTACCCAAATTGGAACTAATGTGGCGCCAAAACGA
ACAGCTTTCTCGCAAGTTCCGGGAGCTCAAAGCCCTCAATTACGAGAACG
CCACCAGCTATCTGAGCAGCAATTCACAGCTGGCCGATTTTATGCAGGAT
TATGTGCTCAATCTGTTGCGGTACAAGCCCAGCAATGTCCTAGAGTTCTC
CATTATGTTTTTCCAGAATATGTCAAAGGGATAGAAGCTTTCTAGACCAT
BS13781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-RB | 1218 | CG13243-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
| CG13243-RA | 1218 | CG13243-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-RB | 1467 | CG13243-RB | 106..1323 | 17..1234 | 6090 | 100 | Plus |
| CG13243-RA | 1421 | CG13243-RA | 106..1323 | 17..1234 | 6090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15852752..15853966 | 20..1234 | 6075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 1579..1617 | 522..560 | 114 | 76.9 | Plus |
BS13781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:41 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 25..1242 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:36 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 106..1323 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:18 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 25..1242 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:29 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 106..1323 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:29 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15852751..15853966 | 17..1234 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:36 Download gff for
BS13781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15852751..15853966 | 17..1234 | 99 | | Plus |
BS13781.5prime Sequence
521 bp (448 high quality bases) assembled on 2006-10-13
> BS13781.5prime
GAAGTTATCAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGG
ATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAAC
AAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGC
CCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGA
TTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCC
AAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTT
CATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAA
TCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTG
GAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAA
NGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATG
ACAAGTTCCTTCTCATCTGCG
BS13781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-PA | 1218 | CG13243-RA | 1..505 | 17..521 | 2506 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-RB | 1467 | CG13243-RB | 106..610 | 17..521 | 2514 | 99.8 | Plus |
| CG13243-RA | 1421 | CG13243-RA | 106..610 | 17..521 | 2514 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15852752..15853253 | 20..521 | 2499 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:43:59 has no hits.
BS13781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:09 Download gff for
BS13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-PA | 1..505 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:13 Download gff for
BS13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 97..610 | 7..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:22 Download gff for
BS13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 97..610 | 7..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:22 Download gff for
BS13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15852750..15853253 | 16..521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:13 Download gff for
BS13781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15852750..15853253 | 16..521 | 99 | | Plus |
BS13781.3prime Sequence
556 bp (523 high quality bases) assembled on 2006-10-13
> BS13781.3prime
ATGGTCTAGAAAGCTTCTATCCCTTTGACATATTCTGGAAAAACATAATG
GAGAACTCTAGGACATTGCTGGGCTTGTACCGCAACAGATTGAGCACATA
ATCCTGCATAAAATCGGCCAGCTGTGAATTGCTGCTCAGATAGCTGGTGG
CGTTCTCGTAATTGAGGGCTTTGAGCTCCCGGAACTTGCGAGAAAGCTGT
TCGTTTTGGCGCCACATTAGTTCCAATTTGGGTAGGATAGGTTCCTTTCT
CTTCGGTGGCATGCAGGCGGCATGCAAAAGGTAGTTATAGCCACGCCAAT
AATGCAGAACAATCCGGCCCTCAGGAGTCATGAAGGTCTCGGCCACATCC
TGGAGCTCATCGTTGAAACATTGCTGGGTGAAGATGTGCACGACATTCTT
GTATGTGCGATAGAAAATTCGCACCTCCTTGCGCTCCTTGGAAACAACCA
GATTGCAGCGAAGGACCCGGCCATACAAATTCATTGTGTAGTACTCGAAG
TTGCCCACAAAATTGTTGCACACTAGGTGTCGCATCAGCAGCATAATCCC
GCCATC
BS13781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-PA | 1218 | CG13243-RA | 679..1218 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-RB | 1467 | CG13243-RB | 784..1323 | 556..17 | 2700 | 100 | Minus |
| CG13243-RA | 1421 | CG13243-RA | 784..1323 | 556..17 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15853427..15853966 | 556..17 | 2700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:04 has no hits.
BS13781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:08 Download gff for
BS13781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-PA | 679..1218 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:19 Download gff for
BS13781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 784..1326 | 11..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:44 Download gff for
BS13781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 784..1326 | 11..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:44 Download gff for
BS13781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15853427..15853969 | 11..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:19 Download gff for
BS13781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15853427..15853969 | 11..556 | 99 | | Minus |
BS13781.pep Sequence
Translation from 16 to 1233
> BS13781.pep
MDAQGDQDMRLDPPLFVTCDMEQFRDPNKKRAANDACEELDKLDAQDEIS
VSSIISALLRPIEPSDDQYKVCDWGINPKQFMPTKQAIIFKEQLFISKLR
NTNCKLNENLKIFFERELEQIGRFCLNVEESFDGYVIFSSSKMKKGKGMT
ECGHQLKGKYDDKFLLICEKRSEFDRIDNTRVEKTLELRNHADLMLTAIR
ETKINEEVQRFKARIDIKDRDHVFVLDGGIMLLMRHLVCNNFVGNFEYYT
MNLYGRVLRCNLVVSKERKEVRIFYRTYKNVVHIFTQQCFNDELQDVAET
FMTPEGRIVLHYWRGYNYLLHAACMPPKRKEPILPKLELMWRQNEQLSRK
FRELKALNYENATSYLSSNSQLADFMQDYVLNLLRYKPSNVLEFSIMFFQ
NMSKG*
BS13781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-PB | 405 | CG13243-PB | 1..405 | 1..405 | 2135 | 100 | Plus |
| CG13243-PA | 405 | CG13243-PA | 1..405 | 1..405 | 2135 | 100 | Plus |
