Clone Sequence Records
BS13782.3prime Sequence
687 bp (653 high quality bases) assembled on 2006-10-13
> BS13782.3prime
ATGGTCTAGAAAGCTTTCAAATGGAGAATCGCGTCCAGCGCTCCACGAGA
CTGGGTCGCGGCGAGGCCCTGTACCGTTCGTCGAAGATGGGGCAGAACTT
CTCCGGGAACCGCTGCTGCAGGCAGCGAATGACGGTGCCCGTGAGATAGA
ATCGCGGTGGCCAGCGGCACTCGCACGGCGGGATGCAGGTGGAGCACTGC
GCCTGCAAGGCGTTCCACTTGCTCATGGTGGTTTCCAGCATGGGCGGCAG
GCACTCCAATCGCCACGGCAGCCGGAGATCCCGTGCGGTCCAGTCGCAGT
CGCACGGCGGAATGCAGGTCATGCACATGAGTTCCTCGGGTTCCATGTCC
TCGGGTTCCTCCGGCGGCTTTGCCGCCTCCTCGCACTTGTACATCGTGAA
GCGCGGTACCATGCCGATGAGCTCCTTGTACTTGCGCTCCTGCTCGTGGC
GCAGCCACAGGTACAGTAGATCCCAGTGGTCCAGGTTGCGGGCCCGCTCC
CGTAGCATCTGCATCCGTCGGTAGAGATCACTCCTGCGCACCTCGTCATA
GTTTACTCCGGTCTGCGTGTGGAACAGCAGGTACAGCTCATTGGGCTTCT
CGTCCGGCAGCGAGATGCTGGATGAGAACTTCGTCAGCTCGAAGTGGAAG
AGCATACGGATGCCATAGGATTTGTGACGGATGTGAT
BS13782.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-PA | 1050 | CG15625-RA | 380..1050 | 687..17 | 3330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-RA | 1222 | CG15625-RA | 462..1132 | 687..17 | 3340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4890517..4891187 | 687..17 | 3340 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:27:05 has no hits.
BS13782.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:09 Download gff for
BS13782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-PA | 380..1050 | 17..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:10 Download gff for
BS13782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 462..1135 | 13..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:58 Download gff for
BS13782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 462..1135 | 13..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:58 Download gff for
BS13782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4890517..4891190 | 13..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:10 Download gff for
BS13782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4890517..4891190 | 13..687 | 99 | | Minus |
BS13782.5prime Sequence
724 bp (680 high quality bases) assembled on 2006-10-13
> BS13782.5prime
GAAGTTATCAGTCGACATGCCCTATCTATATGGAATAGCGGACACCAAGT
TCCTCCACCAGAAGGTGAAAAAGAAGACAAAGATCCGTTCGGATATGGCA
CCCACCAAGTTCCAACGGAATGAGTTCCTAAAGGGCTGTCCCAAGTACGA
TGGGGACGATATACCCATACAGTTCAGGACGACACCCGATTCTCTCGTGG
AACTGAGCATCATTGTGGTGGACAAGCTGCCATTGCCTTCGATATTCGAA
TGGGATGACATGGACATCAGGCGCTGGATCAATGGCTACGGATATCCACA
GTACATGAACACTTTCCGGGTGAACATGATCACGGGTCGCAAGCTACTGC
TCCTGGACGCCTCCGCTCTGTGTGCGATGAACATCAAGAATTTCGATCAC
ATCCGTCACATATCCTATGGCATCCGTATGCTCTTCCACTTCGAGCTGAC
GAAGTTCTCATCCAGCATCTCGCTGCCGGACGAGAAGCCCAATGAGCTGT
ACCTGCTGTTCCACACGCAGACCGGAGTAAACTATGACGAGGTGCGCAGG
AGTGATCTCTACCGACGGATGCAGATGCTACGGGAGCGGGCCCGCAACCT
GGACCACTGGGATCTACTGTACCTGTGGCTGCGCCACGAGCAGGAGCGCA
AGTACAAGGAGCTCATCGGCATGGTACCGCGCTTCACGATGTACAAGTGC
GAGGAGGCGGCAAAGCCGCCGGAG
BS13782.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-PA | 1050 | CG15625-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-RA | 1222 | CG15625-RA | 83..790 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4890428..4890845 | 307..724 | 2090 | 100 | Plus |
2L | 23513712 | 2L | 4890077..4890367 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:55:00 has no hits.
BS13782.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:10 Download gff for
BS13782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:04 Download gff for
BS13782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..790 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:09 Download gff for
BS13782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..790 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:09 Download gff for
BS13782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4890077..4890367 | 17..307 | 100 | -> | Plus |
2L | 4890429..4890845 | 308..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:04 Download gff for
BS13782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4890077..4890367 | 17..307 | 100 | -> | Plus |
arm_2L | 4890429..4890845 | 308..724 | 100 | | Plus |
BS13782.complete Sequence
1082 bp assembled on 2006-11-01
GenBank Submission: FJ637527
> BS13782.complete
GAAGTTATCAGTCGACATGCCCTATCTATATGGAATAGCGGACACCAAGT
TCCTCCACCAGAAGGTGAAAAAGAAGACAAAGATCCGTTCGGATATGGCA
CCCACCAAGTTCCAACGGAATGAGTTCCTAAAGGGCTGTCCCAAGTACGA
TGGGGACGATATACCCATACAGTTCAGGACGACACCCGATTCTCTCGTGG
AACTGAGCATCATTGTGGTGGACAAGCTGCCATTGCCTTCGATATTCGAA
TGGGATGACATGGACATCAGGCGCTGGATCAATGGCTACGGATATCCACA
GTACATGAACACTTTCCGGGTGAACATGATCACGGGTCGCAAGCTACTGC
TCCTGGACGCCTCCGCTCTGTGTGCGATGAACATCAAGAATTTCGATCAC
ATCCGTCACATATCCTATGGCATCCGTATGCTCTTCCACTTCGAGCTGAC
GAAGTTCTCATCCAGCATCTCGCTGCCGGACGAGAAGCCCAATGAGCTGT
ACCTGCTGTTCCACACGCAGACCGGAGTAAACTATGACGAGGTGCGCAGG
AGTGATCTCTACCGACGGATGCAGATGCTACGGGAGCGGGCCCGCAACCT
GGACCACTGGGATCTACTGTACCTGTGGCTGCGCCACGAGCAGGAGCGCA
AGTACAAGGAGCTCATCGGCATGGTACCGCGCTTCACGATGTACAAGTGC
GAGGAGGCGGCAAAGCCGCCGGAGGAACCCGAGGACATGGAACCCGAGGA
ACTCATGTGCATGACCTGCATTCCGCCGTGCGACTGCGACTGGACCGCAC
GGGATCTCCGGCTGCCGTGGCGATTGGAGTGCCTGCCGCCCATGCTGGAA
ACCACCATGAGCAAGTGGAACGCCTTGCAGGCGCAGTGCTCCACCTGCAT
CCCGCCGTGCGAGTGCCGCTGGCCACCGCGATTCTATCTCACGGGCACCG
TCATTCGCTGCCTGCAGCAGCGGTTCCCGGAGAAGTTCTGCCCCATCTTC
GACGAACGGTACAGGGCCTCGCCGCGACCCAGTCTCGTGGAGCGCTGGAC
GCGATTCTCCATTTGAAAGCTTTCTAGACCAT
BS13782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-RA | 1050 | CG15625-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-RA | 1222 | CG15625-RA | 83..1132 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4890428..4891187 | 307..1066 | 3800 | 100 | Plus |
2L | 23513712 | 2L | 4890077..4890367 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:57:37 has no hits.
BS13782.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:02 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:26 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..1135 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:31 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..1131 | 17..1065 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:02 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..1135 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:30 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15625-RA | 83..1131 | 17..1065 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:30 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4890077..4890367 | 17..307 | 100 | -> | Plus |
2L | 4890429..4891186 | 308..1065 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:31 Download gff for
BS13782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4890077..4890367 | 17..307 | 100 | -> | Plus |
arm_2L | 4890429..4891186 | 308..1065 | 100 | | Plus |
BS13782.pep Sequence
Translation from 16 to 1065
> BS13782.pep
MPYLYGIADTKFLHQKVKKKTKIRSDMAPTKFQRNEFLKGCPKYDGDDIP
IQFRTTPDSLVELSIIVVDKLPLPSIFEWDDMDIRRWINGYGYPQYMNTF
RVNMITGRKLLLLDASALCAMNIKNFDHIRHISYGIRMLFHFELTKFSSS
ISLPDEKPNELYLLFHTQTGVNYDEVRRSDLYRRMQMLRERARNLDHWDL
LYLWLRHEQERKYKELIGMVPRFTMYKCEEAAKPPEEPEDMEPEELMCMT
CIPPCDCDWTARDLRLPWRLECLPPMLETTMSKWNALQAQCSTCIPPCEC
RWPPRFYLTGTVIRCLQQRFPEKFCPIFDERYRASPRPSLVERWTRFSI*
BS13782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15625-PA | 349 | CG15625-PA | 1..349 | 1..349 | 1926 | 100 | Plus |
CG13996-PA | 256 | CG13996-PA | 51..245 | 43..242 | 389 | 37 | Plus |