Clone BS13782 Report

Search the DGRC for BS13782

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG15625-RA
Protein status:BS13782.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13782.3prime Sequence

687 bp (653 high quality bases) assembled on 2006-10-13

> BS13782.3prime
ATGGTCTAGAAAGCTTTCAAATGGAGAATCGCGTCCAGCGCTCCACGAGA
CTGGGTCGCGGCGAGGCCCTGTACCGTTCGTCGAAGATGGGGCAGAACTT
CTCCGGGAACCGCTGCTGCAGGCAGCGAATGACGGTGCCCGTGAGATAGA
ATCGCGGTGGCCAGCGGCACTCGCACGGCGGGATGCAGGTGGAGCACTGC
GCCTGCAAGGCGTTCCACTTGCTCATGGTGGTTTCCAGCATGGGCGGCAG
GCACTCCAATCGCCACGGCAGCCGGAGATCCCGTGCGGTCCAGTCGCAGT
CGCACGGCGGAATGCAGGTCATGCACATGAGTTCCTCGGGTTCCATGTCC
TCGGGTTCCTCCGGCGGCTTTGCCGCCTCCTCGCACTTGTACATCGTGAA
GCGCGGTACCATGCCGATGAGCTCCTTGTACTTGCGCTCCTGCTCGTGGC
GCAGCCACAGGTACAGTAGATCCCAGTGGTCCAGGTTGCGGGCCCGCTCC
CGTAGCATCTGCATCCGTCGGTAGAGATCACTCCTGCGCACCTCGTCATA
GTTTACTCCGGTCTGCGTGTGGAACAGCAGGTACAGCTCATTGGGCTTCT
CGTCCGGCAGCGAGATGCTGGATGAGAACTTCGTCAGCTCGAAGTGGAAG
AGCATACGGATGCCATAGGATTTGTGACGGATGTGAT

BS13782.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-PA 1050 CG15625-RA 380..1050 687..17 3330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-RA 1222 CG15625-RA 462..1132 687..17 3340 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4890517..4891187 687..17 3340 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:27:05 has no hits.

BS13782.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:09 Download gff for BS13782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-PA 380..1050 17..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:10 Download gff for BS13782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 462..1135 13..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:58 Download gff for BS13782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 462..1135 13..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:58 Download gff for BS13782.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4890517..4891190 13..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:10 Download gff for BS13782.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4890517..4891190 13..687 99   Minus

BS13782.5prime Sequence

724 bp (680 high quality bases) assembled on 2006-10-13

> BS13782.5prime
GAAGTTATCAGTCGACATGCCCTATCTATATGGAATAGCGGACACCAAGT
TCCTCCACCAGAAGGTGAAAAAGAAGACAAAGATCCGTTCGGATATGGCA
CCCACCAAGTTCCAACGGAATGAGTTCCTAAAGGGCTGTCCCAAGTACGA
TGGGGACGATATACCCATACAGTTCAGGACGACACCCGATTCTCTCGTGG
AACTGAGCATCATTGTGGTGGACAAGCTGCCATTGCCTTCGATATTCGAA
TGGGATGACATGGACATCAGGCGCTGGATCAATGGCTACGGATATCCACA
GTACATGAACACTTTCCGGGTGAACATGATCACGGGTCGCAAGCTACTGC
TCCTGGACGCCTCCGCTCTGTGTGCGATGAACATCAAGAATTTCGATCAC
ATCCGTCACATATCCTATGGCATCCGTATGCTCTTCCACTTCGAGCTGAC
GAAGTTCTCATCCAGCATCTCGCTGCCGGACGAGAAGCCCAATGAGCTGT
ACCTGCTGTTCCACACGCAGACCGGAGTAAACTATGACGAGGTGCGCAGG
AGTGATCTCTACCGACGGATGCAGATGCTACGGGAGCGGGCCCGCAACCT
GGACCACTGGGATCTACTGTACCTGTGGCTGCGCCACGAGCAGGAGCGCA
AGTACAAGGAGCTCATCGGCATGGTACCGCGCTTCACGATGTACAAGTGC
GAGGAGGCGGCAAAGCCGCCGGAG

BS13782.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-PA 1050 CG15625-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-RA 1222 CG15625-RA 83..790 17..724 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4890428..4890845 307..724 2090 100 Plus
2L 23513712 2L 4890077..4890367 17..307 1455 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:55:00 has no hits.

BS13782.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:10 Download gff for BS13782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:04 Download gff for BS13782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..790 17..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:09 Download gff for BS13782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..790 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:09 Download gff for BS13782.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4890077..4890367 17..307 100 -> Plus
2L 4890429..4890845 308..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:04 Download gff for BS13782.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4890077..4890367 17..307 100 -> Plus
arm_2L 4890429..4890845 308..724 100   Plus

BS13782.complete Sequence

1082 bp assembled on 2006-11-01

GenBank Submission: FJ637527

> BS13782.complete
GAAGTTATCAGTCGACATGCCCTATCTATATGGAATAGCGGACACCAAGT
TCCTCCACCAGAAGGTGAAAAAGAAGACAAAGATCCGTTCGGATATGGCA
CCCACCAAGTTCCAACGGAATGAGTTCCTAAAGGGCTGTCCCAAGTACGA
TGGGGACGATATACCCATACAGTTCAGGACGACACCCGATTCTCTCGTGG
AACTGAGCATCATTGTGGTGGACAAGCTGCCATTGCCTTCGATATTCGAA
TGGGATGACATGGACATCAGGCGCTGGATCAATGGCTACGGATATCCACA
GTACATGAACACTTTCCGGGTGAACATGATCACGGGTCGCAAGCTACTGC
TCCTGGACGCCTCCGCTCTGTGTGCGATGAACATCAAGAATTTCGATCAC
ATCCGTCACATATCCTATGGCATCCGTATGCTCTTCCACTTCGAGCTGAC
GAAGTTCTCATCCAGCATCTCGCTGCCGGACGAGAAGCCCAATGAGCTGT
ACCTGCTGTTCCACACGCAGACCGGAGTAAACTATGACGAGGTGCGCAGG
AGTGATCTCTACCGACGGATGCAGATGCTACGGGAGCGGGCCCGCAACCT
GGACCACTGGGATCTACTGTACCTGTGGCTGCGCCACGAGCAGGAGCGCA
AGTACAAGGAGCTCATCGGCATGGTACCGCGCTTCACGATGTACAAGTGC
GAGGAGGCGGCAAAGCCGCCGGAGGAACCCGAGGACATGGAACCCGAGGA
ACTCATGTGCATGACCTGCATTCCGCCGTGCGACTGCGACTGGACCGCAC
GGGATCTCCGGCTGCCGTGGCGATTGGAGTGCCTGCCGCCCATGCTGGAA
ACCACCATGAGCAAGTGGAACGCCTTGCAGGCGCAGTGCTCCACCTGCAT
CCCGCCGTGCGAGTGCCGCTGGCCACCGCGATTCTATCTCACGGGCACCG
TCATTCGCTGCCTGCAGCAGCGGTTCCCGGAGAAGTTCTGCCCCATCTTC
GACGAACGGTACAGGGCCTCGCCGCGACCCAGTCTCGTGGAGCGCTGGAC
GCGATTCTCCATTTGAAAGCTTTCTAGACCAT

BS13782.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-RA 1050 CG15625-PA 1..1050 17..1066 5250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-RA 1222 CG15625-RA 83..1132 17..1066 5250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4890428..4891187 307..1066 3800 100 Plus
2L 23513712 2L 4890077..4890367 17..307 1455 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:57:37 has no hits.

BS13782.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:02 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 1..1050 17..1066 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:26 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..1135 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:31 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..1131 17..1065 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:02 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..1135 17..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:30 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
CG15625-RA 83..1131 17..1065 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:30 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4890077..4890367 17..307 100 -> Plus
2L 4890429..4891186 308..1065 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:31 Download gff for BS13782.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4890077..4890367 17..307 100 -> Plus
arm_2L 4890429..4891186 308..1065 100   Plus

BS13782.pep Sequence

Translation from 16 to 1065

> BS13782.pep
MPYLYGIADTKFLHQKVKKKTKIRSDMAPTKFQRNEFLKGCPKYDGDDIP
IQFRTTPDSLVELSIIVVDKLPLPSIFEWDDMDIRRWINGYGYPQYMNTF
RVNMITGRKLLLLDASALCAMNIKNFDHIRHISYGIRMLFHFELTKFSSS
ISLPDEKPNELYLLFHTQTGVNYDEVRRSDLYRRMQMLRERARNLDHWDL
LYLWLRHEQERKYKELIGMVPRFTMYKCEEAAKPPEEPEDMEPEELMCMT
CIPPCDCDWTARDLRLPWRLECLPPMLETTMSKWNALQAQCSTCIPPCEC
RWPPRFYLTGTVIRCLQQRFPEKFCPIFDERYRASPRPSLVERWTRFSI*

BS13782.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15625-PA 349 CG15625-PA 1..349 1..349 1926 100 Plus
CG13996-PA 256 CG13996-PA 51..245 43..242 389 37 Plus