Clone Sequence Records
BS13786.3prime Sequence
599 bp (470 high quality bases) assembled on 2006-10-13
> BS13786.3prime
ATGGTCTAGAAAGCTTTTATTCATCGACGCTCTCCATCGGCGACTGGACA
TTCGCATTGGGTCCACCGGCGGCGGCATATGCCTTCTCCATAGCGGCCTG
CGACTCCCGCTTCGGCGTGACCCGCTTGTGCTGTGTGGTGAAGTTTACGT
TGATCCGTCCGCTGCCACGAACGGAGCTCATGGGCGGACGCATGAGGGGC
GTGGCCAGGCGACTGGCGCCTCCCGACGATGGCGGATACTGCAGTGTATC
TGGCTTGGGCGTAGCTTTCGCCTCCTTGCGTACATCCACTACCAGAGCTT
CGCGCACCGAGTTCTCCTGGAACTGCTTCACACGCTCGCGCATATCTGTC
TCCCGCTGGATCTCCTTCTGGATCTCCGCCCGCCGCTTGTTATCGTAACG
TTCCAGTGCCTTTTCATCCCGCTTCTTGTTGCGCTCCACGATGAGGTCGG
CGATCTCTAGGCGCTTCTGCATGAGTGCCTCCTTGTCCAGCTTCTGGAAC
ATCTCAGGCCATAAGCCCTTCTCTTTCTTAACCAGCACAATGCGGGCTTC
GTTCTTAAAAAATGCGACAAAAGCTGGCCATCTCGTCGATCTCCTGGGC
BS13786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-PA | 723 | CG14921-RA | 179..723 | 561..17 | 2725 | 100 | Minus |
| CG14921-PA | 723 | CG14921-RA | 142..183 | 599..558 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-RA | 953 | CG14921-RA | 271..852 | 599..17 | 2890 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11120743..11121301 | 17..576 | 2750 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:57 has no hits.
BS13786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:12 Download gff for
BS13786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-PA | 142..723 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:53 Download gff for
BS13786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 240..826 | 10..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:25 Download gff for
BS13786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 271..857 | 10..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:25 Download gff for
BS13786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11120738..11121298 | 10..573 | 99 | <- | Plus |
| 2L | 11121419..11121444 | 574..599 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:53 Download gff for
BS13786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11120738..11121298 | 10..573 | 99 | <- | Plus |
| arm_2L | 11121419..11121444 | 574..599 | 100 | | Plus |
BS13786.5prime Sequence
641 bp (595 high quality bases) assembled on 2006-10-13
> BS13786.5prime
GAAGTTATCAGTCGACATGGTACAGATTTCGCAGACAGAGGAGGACATCA
AGATCTCCATCGAACTCAATCGTCTGGTAACCCGCAAGCCGGACGTTGTT
CTCCTTCCGCAGTACTTAAAGTTCAACAATCCACCCATCTTCTTTGAGCG
TCATCTGGCCCAGGAGATCGACGAGATGGCCAGCTTTTGTCGCATTTTTA
AGAACGAAGCCCGCATTGTGCTGGTTAAGAAAGAGAAGGGCTTATGGCCT
GAGATGTTCCAGAAGCTGGACAAGGAGGCACTCATGCAGAAGCGCCTAGA
GATCGCCGACCTCATCGTGGAGCGCAACAAGAAGCGGGATGAAAAGGCAC
TGGAACGTTACGATAACAAGCGGCGGGCGGAGATCCAGAAGGAGATCCAG
CGGGAGACAGATATGCGCGAGCGTGTGAAGCAGTTCCAGGAGAACTCGGT
GCGCGAAGCTCTGGTAGTGGATGTACGCAAGGAGGCGAAAGCTACGCCCA
AGCCAGATACACTGCAGTATCCGCCATCGTCGGGAGGCGCCAGTCGCCTG
GCCACGCCCCTCATGCGTCCGCCCATGAGCTCCGTTCGTGGCAGCGGACG
GATCAACGTAAACTTCACCACACAGCACAAGCGGGTCACGC
BS13786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-PA | 723 | CG14921-RA | 1..625 | 17..641 | 3125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-RA | 953 | CG14921-RA | 129..754 | 16..641 | 3130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11120841..11121301 | 641..181 | 2305 | 100 | Minus |
| 2L | 23513712 | 2L | 11121419..11121586 | 183..16 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:11:12 has no hits.
BS13786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:12 Download gff for
BS13786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-PA | 1..625 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:38 Download gff for
BS13786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 94..723 | 12..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:06 Download gff for
BS13786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 125..754 | 12..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:06 Download gff for
BS13786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11120841..11121298 | 184..641 | 100 | <- | Minus |
| 2L | 11121419..11121590 | 12..183 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:38 Download gff for
BS13786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11120841..11121298 | 184..641 | 100 | <- | Minus |
| arm_2L | 11121419..11121590 | 12..183 | 98 | | Minus |
BS13786.complete Sequence
755 bp assembled on 2006-11-01
GenBank Submission: FJ637528
> BS13786.complete
GAAGTTATCAGTCGACATGGTACAGATTTCGCAGACAGAGGAGGACATCA
AGATCTCCATCGAACTCAATCGTCTGGTAACCCGCAAGCCGGACGTTGTT
CTCCTTCCGCAGTACTTAAAGTTCAACAATCCACCCATCTTCTTTGAGCG
TCATCTGGCCCAGGAGATCGACGAGATGGCCAGCTTTTGTCGCATTTTTA
AGAACGAAGCCCGCATTGTGCTGGTTAAGAAAGAGAAGGGCTTATGGCCT
GAGATGTTCCAGAAGCTGGACAAGGAGGCACTCATGCAGAAGCGCCTAGA
GATCGCCGACCTCATCGTGGAGCGCAACAAGAAGCGGGATGAAAAGGCAC
TGGAACGTTACGATAACAAGCGGCGGGCGGAGATCCAGAAGGAGATCCAG
CGGGAGACAGATATGCGCGAGCGTGTGAAGCAGTTCCAGGAGAACTCGGT
GCGCGAAGCTCTGGTAGTGGATGTACGCAAGGAGGCGAAAGCTACGCCCA
AGCCAGATACACTGCAGTATCCGCCATCGTCGGGAGGCGCCAGTCGCCTG
GCCACGCCCCTCATGCGTCCGCCCATGAGCTCCGTTCGTGGCAGCGGACG
GATCAACGTAAACTTCACCACACAGCACAAGCGGGTCACGCCGAAGCGGG
AGTCGCAGGCCGCTATGGAGAAGGCATATGCCGCCGCCGGTGGACCCAAT
GCGAATGTCCAGTCGCCGATGGAGAGCGTCGATGAATAAAAGCTTTCTAG
ACCAT
BS13786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-RA | 723 | CG14921-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-RA | 953 | CG14921-RA | 129..852 | 16..739 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11120743..11121301 | 739..181 | 2795 | 100 | Minus |
| 2L | 23513712 | 2L | 11121419..11121586 | 183..16 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:21 has no hits.
BS13786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:00 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:24 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 94..826 | 12..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:28 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 99..819 | 17..737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:00 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 94..826 | 12..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:12 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 130..850 | 17..737 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:12 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11120745..11121298 | 184..737 | 100 | <- | Minus |
| 2L | 11121419..11121585 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:28 Download gff for
BS13786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11120745..11121298 | 184..737 | 100 | <- | Minus |
| arm_2L | 11121419..11121585 | 17..183 | 100 | | Minus |
BS13786.pep Sequence
Translation from 16 to 738
> BS13786.pep
MVQISQTEEDIKISIELNRLVTRKPDVVLLPQYLKFNNPPIFFERHLAQE
IDEMASFCRIFKNEARIVLVKKEKGLWPEMFQKLDKEALMQKRLEIADLI
VERNKKRDEKALERYDNKRRAEIQKEIQRETDMRERVKQFQENSVREALV
VDVRKEAKATPKPDTLQYPPSSGGASRLATPLMRPPMSSVRGSGRINVNF
TTQHKRVTPKRESQAAMEKAYAAAGGPNANVQSPMESVDE*
BS13786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-PA | 240 | CG14921-PA | 1..240 | 1..240 | 1212 | 100 | Plus |
