Clone Sequence Records
BS13787.complete Sequence
1865 bp assembled on 2009-12-07
GenBank Submission: KX801638
> BS13787.complete
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGGG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAATTTGCCTGGATGTGGGC
ACAAATAACAAATCGCTACACGAGGATCCCCTGTACATCGGTCTAAGGGA
TGAGCGTTTAAAGGGCGATGAGTACGTGTGCTTTGTGGATGAGTTCATGG
AGGCAGTCGTATCCACCTTTGGAGATCAAACGCTCATCCACTTCGAGGAC
TTTGCGACACCCAATGCTTTTATGTTTCTGAATAGGTATCAGCATTGCTA
CTGCCATTTCAATGACGACATTCAGGGCACTGCCGCTGTTGGTTTGGGTG
GATTGCTTGGCATCCAGAGGATCACCAAGAAGCCGCTGGAGGAGCATGTC
ATTGTCTTCGCCGGAGCGGGAAGCGCTGCCATGGGCATCGCCTATTTGCT
TAAAATGGAGCTGATGTCCAGGGGTCTCTCCGAGGCTGATGCTGCCAAAA
ATATATATTTTTACGATCAAGACGGTGTCTTGACCACAGCAAGGAAGAGC
ATACCGGATATTCTATGCGTTTTCGCCAAGAACATGAAGGAAACTAAGTC
CCTGGAGACGTTGGTCGAACAAGTGAAGCCCTCAATTATTATGGGTGCCA
CCTCGGCACCAGGACTTTTCACTGAGAAAATAATACGCACAATGGCGGCG
AGTCACGAGCGTCCTGGCATTTTTGCCTTCTCCAATCCCACCATCAAATC
TGAGTGCACTGCCGAACAGGCGTACAAATTCTCAGATGGAAAGGCTATAT
ATTCGGCAGGATCTCCTTTTCCGCCCGTGGAGTTCAATGGCAAAAGGCTA
ACTCCTGGTCAAGCTAACAACTGTTTTGCTTTTCCCGCTTTGGTTTTGGC
CACCATGACTGTTTTGGCCACTCGAATGCCAGACGAGATATTCCTTTTGG
CCGCCCACGAGCTCGCTGAATTTCCAACCAATGAGGAGATGCAAAGCGGA
CGTATCTATCCTCTGGTGAAGCAGGCCAATGAAGTGGCCTACAAAATAGG
CGTGAAAGTGGCCAAGTATCTGATAGAAAACGGTTATGCTAAGCGCAATT
TAGAACCGGAAGATGTTGAGGAGTATATCGAAAAGAATAGCTATAAACTG
ACCTATGGAAGCTCGCTGGCTGAGACTTGGGCGTATCCAAAAATGAAACC
GCATCCAAGTACAGCCGGCCATGAAAATAAACATCAAAAGAAAAAGTAGA
AGCTTTCTAGACCAT
BS13787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Menl-1-RD | 1833 | CG7964-PD | 1..1833 | 17..1849 | 9075 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Menl-1-RD | 4198 | CG7964-RD | 210..2042 | 17..1849 | 9075 | 99.7 | Plus |
Menl-2-RE | 4198 | CG7969-RE | 210..2042 | 17..1849 | 9075 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16417764..16418966 | 1388..186 | 5940 | 99.6 | Minus |
2R | 25286936 | 2R | 16417408..16417704 | 1684..1388 | 1470 | 99.7 | Minus |
2R | 25286936 | 2R | 16419018..16419189 | 188..17 | 860 | 100 | Minus |
2R | 25286936 | 2R | 16417184..16417351 | 1849..1682 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:13:08 has no hits.
BS13787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:02 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-1-RA | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:56 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-1-RC | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:29 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-1-RA | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:37 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-2-RE | 210..2033 | 17..1840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:37 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16417193..16417350 | 1683..1840 | 100 | <- | Minus |
2R | 16417410..16417704 | 1388..1682 | 99 | <- | Minus |
2R | 16417765..16418964 | 188..1387 | 99 | <- | Minus |
2R | 16419019..16419189 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:56 Download gff for
BS13787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12304698..12304855 | 1683..1840 | 100 | <- | Minus |
arm_2R | 12304915..12305209 | 1388..1682 | 99 | <- | Minus |
arm_2R | 12305270..12306469 | 188..1387 | 99 | <- | Minus |
arm_2R | 12306524..12306694 | 17..187 | 100 | | Minus |
BS13787.3prime Sequence
651 bp (610 high quality bases) assembled on 2006-10-13
> BS13787.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTTTTGATGTTTATTTTCATGGCCG
GCTGTACTTGGATGCGGTTTCATTTTTGGATACGCCCAAGTCTCAGCCAG
CGAGCTTCCATAGGTCAGTTTATAGCTATTCTTTTCGATATACTCCTCAA
CATCTTCCGGTTCTAAATTGCGCTTAGCATAACCGTTTTCTATCAGATAC
TTGGCCACTTTCACGCCTATTTTGTAGGCCACTTCATTGGCCTGCTTCAC
CAGAGGATAGATACGTCCGCTTTGCATCTCCTCATTGGTTGGAAATTCAG
CGAGCTCGTGGGCGGCCAAAAGGAATATCTCGTCTGGCATTCGAGTGGCC
AAAACAGTCATGGTGGCCAAAACCAAAGCGGGAAAAGCAAAACAGTTGTT
AGCTTGACCAGGAGTTAGCCTTTTGCCATTGAACTCCACGGGCGGAAAAG
GAGATCCTGCCGAATATATAGCCTTTCCATCTGAGAATTTGTACGCCTGT
TCGGCAGTGCACTCAGATTTGATGGTGGGATTGGAGAAGGCAAAAATGCC
AGGACGCTCGTGACTCGCCGCCATTGTGCGTATTATTTTCTCAGTGAAAA
GTCCTGGTGCCGAGGTGGCACCCATAATAATTGAGGGCTTCACTTGTTCG
A
BS13787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7964-PA | 1833 | Menl-1-RA | 1199..1833 | 651..17 | 3075 | 99.3 | Minus |
CG7964-PC | 1833 | Menl-1-RC | 1199..1833 | 651..17 | 3075 | 99.3 | Minus |
CG7964-PB | 1746 | Menl-1-RB | 1199..1668 | 651..182 | 2250 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Menl-1-RD | 4198 | CG7964-RD | 1408..2042 | 651..17 | 3115 | 99.4 | Minus |
Menl-2-RE | 4198 | CG7969-RE | 1408..2042 | 651..17 | 3115 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16417408..16417704 | 182..478 | 1470 | 99.7 | Plus |
2R | 25286936 | 2R | 16417184..16417351 | 17..184 | 840 | 100 | Plus |
2R | 25286936 | 2R | 16417764..16417937 | 478..651 | 825 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:20:54 has no hits.
BS13787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:13 Download gff for
BS13787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7964-PC | 1200..1833 | 17..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:10 Download gff for
BS13787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-1-RC | 1409..2048 | 10..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:26 Download gff for
BS13787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-2-RE | 1409..2049 | 9..650 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:26 Download gff for
BS13787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16417177..16417350 | 9..183 | 98 | <- | Plus |
2R | 16417410..16417704 | 184..478 | 99 | <- | Plus |
2R | 16417765..16417936 | 479..650 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:10 Download gff for
BS13787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12304682..12304855 | 9..183 | 98 | <- | Plus |
arm_2R | 12304915..12305209 | 184..478 | 99 | <- | Plus |
arm_2R | 12305270..12305441 | 479..650 | 98 | | Plus |
BS13787.5prime Sequence
683 bp (636 high quality bases) assembled on 2006-10-13
> BS13787.5prime
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGNG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAA
BS13787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7964-PA | 1833 | Menl-1-RA | 1..667 | 17..683 | 3291 | 99.7 | Plus |
CG7964-PB | 1746 | Menl-1-RB | 1..667 | 17..683 | 3291 | 99.7 | Plus |
CG7964-PC | 1833 | Menl-1-RC | 1..667 | 17..683 | 3291 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Menl-1-RD | 4198 | CG7964-RD | 210..876 | 17..683 | 3309 | 99.7 | Plus |
Menl-2-RE | 4198 | CG7969-RE | 210..876 | 17..683 | 3309 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16418469..16418966 | 683..186 | 2464 | 99.6 | Minus |
2R | 25286936 | 2R | 16419018..16419189 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:12:27 has no hits.
BS13787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:13 Download gff for
BS13787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7964-PC | 1..665 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:26 Download gff for
BS13787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-1-RC | 205..874 | 12..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:24 Download gff for
BS13787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Menl-2-RE | 205..874 | 12..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:24 Download gff for
BS13787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16418471..16418964 | 188..681 | 99 | <- | Minus |
2R | 16419019..16419194 | 12..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:26 Download gff for
BS13787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12305976..12306469 | 188..681 | 99 | <- | Minus |
arm_2R | 12306524..12306699 | 12..187 | 98 | | Minus |
BS13787.pep Sequence
Translation from 16 to 1848
> BS13787.pep
MSFFRLLNFGITRGSSISKTHQSNCECSPNLIKIRPSSSHDTIRVPIEVV
FSDKCNKALAFTLEERQRLCIHGLMPACVRTYDEQMLAIESNFHSFESNV
GRYRYLRALRQGYERLYFQFVSKNVHAVLPIIYTPTVGLACTVYGMLYRG
MTGIHITKHDRGHMKQILSNWPMRRSVKAICVTDGQRILGLGDLGANGMG
IAVGKMELYTALAGIPPSMLLPICLDVGTNNKSLHEDPLYIGLRDERLKG
DEYVCFVDEFMEAVVSTFGDQTLIHFEDFATPNAFMFLNRYQHCYCHFND
DIQGTAAVGLGGLLGIQRITKKPLEEHVIVFAGAGSAAMGIAYLLKMELM
SRGLSEADAAKNIYFYDQDGVLTTARKSIPDILCVFAKNMKETKSLETLV
EQVKPSIIMGATSAPGLFTEKIIRTMAASHERPGIFAFSNPTIKSECTAE
QAYKFSDGKAIYSAGSPFPPVEFNGKRLTPGQANNCFAFPALVLATMTVL
ATRMPDEIFLLAAHELAEFPTNEEMQSGRIYPLVKQANEVAYKIGVKVAK
YLIENGYAKRNLEPEDVEEYIEKNSYKLTYGSSLAETWAYPKMKPHPSTA
GHENKHQKKK*
BS13787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Menl-1-PD | 610 | CG7964-PD | 1..610 | 1..610 | 3191 | 100 | Plus |
Menl-2-PE | 600 | CG7969-PE | 41..588 | 49..597 | 1473 | 49 | Plus |
Menl-2-PA | 600 | CG7969-PA | 41..588 | 49..597 | 1473 | 49 | Plus |
Menl-2-PD | 558 | CG7969-PD | 9..546 | 59..597 | 1451 | 49 | Plus |
Men-b-PA | 617 | CG5889-PA | 54..601 | 47..593 | 1344 | 47.9 | Plus |