Clone BS13787 Report

Search the DGRC for BS13787

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptMenl-1-RD
Protein status:BS13787.pep: full length peptide match
Sequenced Size:1865

Clone Sequence Records

BS13787.complete Sequence

1865 bp assembled on 2009-12-07

GenBank Submission: KX801638

> BS13787.complete
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGGG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAATTTGCCTGGATGTGGGC
ACAAATAACAAATCGCTACACGAGGATCCCCTGTACATCGGTCTAAGGGA
TGAGCGTTTAAAGGGCGATGAGTACGTGTGCTTTGTGGATGAGTTCATGG
AGGCAGTCGTATCCACCTTTGGAGATCAAACGCTCATCCACTTCGAGGAC
TTTGCGACACCCAATGCTTTTATGTTTCTGAATAGGTATCAGCATTGCTA
CTGCCATTTCAATGACGACATTCAGGGCACTGCCGCTGTTGGTTTGGGTG
GATTGCTTGGCATCCAGAGGATCACCAAGAAGCCGCTGGAGGAGCATGTC
ATTGTCTTCGCCGGAGCGGGAAGCGCTGCCATGGGCATCGCCTATTTGCT
TAAAATGGAGCTGATGTCCAGGGGTCTCTCCGAGGCTGATGCTGCCAAAA
ATATATATTTTTACGATCAAGACGGTGTCTTGACCACAGCAAGGAAGAGC
ATACCGGATATTCTATGCGTTTTCGCCAAGAACATGAAGGAAACTAAGTC
CCTGGAGACGTTGGTCGAACAAGTGAAGCCCTCAATTATTATGGGTGCCA
CCTCGGCACCAGGACTTTTCACTGAGAAAATAATACGCACAATGGCGGCG
AGTCACGAGCGTCCTGGCATTTTTGCCTTCTCCAATCCCACCATCAAATC
TGAGTGCACTGCCGAACAGGCGTACAAATTCTCAGATGGAAAGGCTATAT
ATTCGGCAGGATCTCCTTTTCCGCCCGTGGAGTTCAATGGCAAAAGGCTA
ACTCCTGGTCAAGCTAACAACTGTTTTGCTTTTCCCGCTTTGGTTTTGGC
CACCATGACTGTTTTGGCCACTCGAATGCCAGACGAGATATTCCTTTTGG
CCGCCCACGAGCTCGCTGAATTTCCAACCAATGAGGAGATGCAAAGCGGA
CGTATCTATCCTCTGGTGAAGCAGGCCAATGAAGTGGCCTACAAAATAGG
CGTGAAAGTGGCCAAGTATCTGATAGAAAACGGTTATGCTAAGCGCAATT
TAGAACCGGAAGATGTTGAGGAGTATATCGAAAAGAATAGCTATAAACTG
ACCTATGGAAGCTCGCTGGCTGAGACTTGGGCGTATCCAAAAATGAAACC
GCATCCAAGTACAGCCGGCCATGAAAATAAACATCAAAAGAAAAAGTAGA
AGCTTTCTAGACCAT

BS13787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-1-RD 1833 CG7964-PD 1..1833 17..1849 9075 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-1-RD 4198 CG7964-RD 210..2042 17..1849 9075 99.7 Plus
Menl-2-RE 4198 CG7969-RE 210..2042 17..1849 9075 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16417764..16418966 1388..186 5940 99.6 Minus
2R 25286936 2R 16417408..16417704 1684..1388 1470 99.7 Minus
2R 25286936 2R 16419018..16419189 188..17 860 100 Minus
2R 25286936 2R 16417184..16417351 1849..1682 840 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:13:08 has no hits.

BS13787.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:02 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-1-RA 210..2033 17..1840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:56 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-1-RC 210..2033 17..1840 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:29 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-1-RA 210..2033 17..1840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:37 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RE 210..2033 17..1840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:37 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16417193..16417350 1683..1840 100 <- Minus
2R 16417410..16417704 1388..1682 99 <- Minus
2R 16417765..16418964 188..1387 99 <- Minus
2R 16419019..16419189 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:56 Download gff for BS13787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12304698..12304855 1683..1840 100 <- Minus
arm_2R 12304915..12305209 1388..1682 99 <- Minus
arm_2R 12305270..12306469 188..1387 99 <- Minus
arm_2R 12306524..12306694 17..187 100   Minus

BS13787.3prime Sequence

651 bp (610 high quality bases) assembled on 2006-10-13

> BS13787.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTTTTGATGTTTATTTTCATGGCCG
GCTGTACTTGGATGCGGTTTCATTTTTGGATACGCCCAAGTCTCAGCCAG
CGAGCTTCCATAGGTCAGTTTATAGCTATTCTTTTCGATATACTCCTCAA
CATCTTCCGGTTCTAAATTGCGCTTAGCATAACCGTTTTCTATCAGATAC
TTGGCCACTTTCACGCCTATTTTGTAGGCCACTTCATTGGCCTGCTTCAC
CAGAGGATAGATACGTCCGCTTTGCATCTCCTCATTGGTTGGAAATTCAG
CGAGCTCGTGGGCGGCCAAAAGGAATATCTCGTCTGGCATTCGAGTGGCC
AAAACAGTCATGGTGGCCAAAACCAAAGCGGGAAAAGCAAAACAGTTGTT
AGCTTGACCAGGAGTTAGCCTTTTGCCATTGAACTCCACGGGCGGAAAAG
GAGATCCTGCCGAATATATAGCCTTTCCATCTGAGAATTTGTACGCCTGT
TCGGCAGTGCACTCAGATTTGATGGTGGGATTGGAGAAGGCAAAAATGCC
AGGACGCTCGTGACTCGCCGCCATTGTGCGTATTATTTTCTCAGTGAAAA
GTCCTGGTGCCGAGGTGGCACCCATAATAATTGAGGGCTTCACTTGTTCG
A

BS13787.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7964-PA 1833 Menl-1-RA 1199..1833 651..17 3075 99.3 Minus
CG7964-PC 1833 Menl-1-RC 1199..1833 651..17 3075 99.3 Minus
CG7964-PB 1746 Menl-1-RB 1199..1668 651..182 2250 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-1-RD 4198 CG7964-RD 1408..2042 651..17 3115 99.4 Minus
Menl-2-RE 4198 CG7969-RE 1408..2042 651..17 3115 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16417408..16417704 182..478 1470 99.7 Plus
2R 25286936 2R 16417184..16417351 17..184 840 100 Plus
2R 25286936 2R 16417764..16417937 478..651 825 98.3 Plus
Blast to na_te.dros performed on 2015-02-11 04:20:54 has no hits.

BS13787.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:13 Download gff for BS13787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7964-PC 1200..1833 17..650 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:08:10 Download gff for BS13787.3prime
Subject Subject Range Query Range Percent Splice Strand
Menl-1-RC 1409..2048 10..650 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:26 Download gff for BS13787.3prime
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RE 1409..2049 9..650 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:26 Download gff for BS13787.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16417177..16417350 9..183 98 <- Plus
2R 16417410..16417704 184..478 99 <- Plus
2R 16417765..16417936 479..650 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:08:10 Download gff for BS13787.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12304682..12304855 9..183 98 <- Plus
arm_2R 12304915..12305209 184..478 99 <- Plus
arm_2R 12305270..12305441 479..650 98   Plus

BS13787.5prime Sequence

683 bp (636 high quality bases) assembled on 2006-10-13

> BS13787.5prime
GAAGTTATCAGTCGACATGAGTTTCTTCAGGTTATTGAACTTTGGCATTA
CACGAGGATCTTCGATATCGAAGACACATCAATCAAATTGCGAGTGTAGT
CCAAATTTAATTAAAATTCGTCCGTCTTCATCCCACGACACAATCAGGGT
TCCCATAGAAGTGGTGTTTTCCGACAAGTGCAATAAGGCCTTGGCCTTCA
CGTTGGAGGAACGCCAGCGTTTGTGTATCCATGGACTCATGCCGGCCTGC
GTTCGAACGTACGATGAGCAGATGTTGGCCATCGAGTCCAACTTTCACTC
CTTCGAATCGAATGTGGGCAGATATCGTTATTTGCGGGCTCTGCGCCAGG
GTTACGAGAGACTGTACTTTCAATTCGTATCGAAGAACGTCCACGCGGTG
CTGCCCATTATCTACACGCCCACTGTGGGCTTGGCCTGCACTGTATACGG
CATGTTGTATCGCGGCATGACCGGAATACACATTACCAAACATGATCGAG
GACACATGAAGCAGATCCTGTCCAACTGGCCGATGCGGAGATCGGTGAAA
GCCATCTGTGTGACCGACGGCCAACGTATCCTGGGATTAGGTGACCTGNG
AGCCAATGGCATGGGCATAGCAGTGGGAAAAATGGAACTGTACACAGCCC
TGGCCGGAATTCCGCCGAGCATGTTATTGCCAA

BS13787.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7964-PA 1833 Menl-1-RA 1..667 17..683 3291 99.7 Plus
CG7964-PB 1746 Menl-1-RB 1..667 17..683 3291 99.7 Plus
CG7964-PC 1833 Menl-1-RC 1..667 17..683 3291 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-1-RD 4198 CG7964-RD 210..876 17..683 3309 99.7 Plus
Menl-2-RE 4198 CG7969-RE 210..876 17..683 3309 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16418469..16418966 683..186 2464 99.6 Minus
2R 25286936 2R 16419018..16419189 188..17 860 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:12:27 has no hits.

BS13787.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:13 Download gff for BS13787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7964-PC 1..665 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:26 Download gff for BS13787.5prime
Subject Subject Range Query Range Percent Splice Strand
Menl-1-RC 205..874 12..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:24 Download gff for BS13787.5prime
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RE 205..874 12..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:24 Download gff for BS13787.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16418471..16418964 188..681 99 <- Minus
2R 16419019..16419194 12..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:26 Download gff for BS13787.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12305976..12306469 188..681 99 <- Minus
arm_2R 12306524..12306699 12..187 98   Minus

BS13787.pep Sequence

Translation from 16 to 1848

> BS13787.pep
MSFFRLLNFGITRGSSISKTHQSNCECSPNLIKIRPSSSHDTIRVPIEVV
FSDKCNKALAFTLEERQRLCIHGLMPACVRTYDEQMLAIESNFHSFESNV
GRYRYLRALRQGYERLYFQFVSKNVHAVLPIIYTPTVGLACTVYGMLYRG
MTGIHITKHDRGHMKQILSNWPMRRSVKAICVTDGQRILGLGDLGANGMG
IAVGKMELYTALAGIPPSMLLPICLDVGTNNKSLHEDPLYIGLRDERLKG
DEYVCFVDEFMEAVVSTFGDQTLIHFEDFATPNAFMFLNRYQHCYCHFND
DIQGTAAVGLGGLLGIQRITKKPLEEHVIVFAGAGSAAMGIAYLLKMELM
SRGLSEADAAKNIYFYDQDGVLTTARKSIPDILCVFAKNMKETKSLETLV
EQVKPSIIMGATSAPGLFTEKIIRTMAASHERPGIFAFSNPTIKSECTAE
QAYKFSDGKAIYSAGSPFPPVEFNGKRLTPGQANNCFAFPALVLATMTVL
ATRMPDEIFLLAAHELAEFPTNEEMQSGRIYPLVKQANEVAYKIGVKVAK
YLIENGYAKRNLEPEDVEEYIEKNSYKLTYGSSLAETWAYPKMKPHPSTA
GHENKHQKKK*

BS13787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-1-PD 610 CG7964-PD 1..610 1..610 3191 100 Plus
Menl-2-PE 600 CG7969-PE 41..588 49..597 1473 49 Plus
Menl-2-PA 600 CG7969-PA 41..588 49..597 1473 49 Plus
Menl-2-PD 558 CG7969-PD 9..546 59..597 1451 49 Plus
Men-b-PA 617 CG5889-PA 54..601 47..593 1344 47.9 Plus