Clone Sequence Records
BS13788.complete Sequence
1259 bp assembled on 2009-12-07
GenBank Submission: KX805056
> BS13788.complete
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCTTAAGACCGACTATGTGTACACACCGCCGTGTCCTG
GCTGCGTTGACTGTGCTGCTACTGTACAGCGCCAGGAGACCGCCCAGCCT
TCTGGCCTCTTCACCAGAGGCCTCATTAAGTACAAGAATAATCCGGGTGA
AACCAAGAGGCCGCTAGTCAAGAACGACAATTGCAGCAAGAAGTTCGAGG
GAAGCGCTGAAGCCAGCCAGATAAACATCAATTGTGTTCAAAACAAGGAT
AACTTTGCGGAGCTGGAAAGTCAGTTTATAAGCTCCCTGCAGCCGGGCTG
GGAGTTTATCAAACAAATTCCGGAAGTCACGTGCAGCAAAATTTTACCCA
GCTTGGTGGTTAAGAGCAGGACTATTCAACTGCATCCGGATGGTGAAATG
GGCGAGAAGTTTTACTCCATCGATGGCGAGGAGTATGATGCAAGACCCAT
TAAGGTATCTGTTGTTCCCAATGCTATTAAAGTTTTTTGTTGAAAGCTTT
CTAGACCAT
BS13788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1227 | CG31873-PA | 1..1227 | 17..1243 | 6030 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 65..1291 | 17..1243 | 6030 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270449..10271456 | 236..1243 | 4965 | 99.5 | Plus |
2L | 23513712 | 2L | 10270274..10270394 | 115..235 | 605 | 100 | Plus |
2L | 23513712 | 2L | 10270115..10270213 | 17..115 | 465 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:53:58 has no hits.
BS13788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:55 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-RA | 25..1250 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:54 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..1290 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:53 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-RA | 25..1250 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:28 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..1290 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:28 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
2L | 10270449..10271455 | 236..1242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:54 Download gff for
BS13788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
arm_2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
arm_2L | 10270449..10271455 | 236..1242 | 99 | | Plus |
BS13788.3prime Sequence
600 bp (523 high quality bases) assembled on 2006-10-13
> BS13788.3prime
ATGGTCTAGAAAGCTTTCAACAAAAAACTTTAATAGCATTGGGAACAACA
GATACCTTAATGGGTCTTGCATCATACTCCTCGCCATCGATGGAGTAAAA
CTTCTCGCCCATTTCACCATCCGGATGCAGTTGAATAGTCCTGCTCTTAA
CCACCAAGCTGGGTAAAATTTTGCTGCACGTGACTTCCGGAATTTGTTTG
ATAAACTCCCAGCCCGGCTGCAGGGAGCTTATAAACTGACTTTCCAGCTC
CGCAAAGTTATCCTTGTTTTGAACACAATTGATGTTTATCTGGCTGGCTT
CAGCGCTTCCCTCGAACTTCTTGCTGCAATTGTCGTTCTTGACTAGCGGC
CTCTTGGTTTCACCCGGATTATTCTTGTACTTAATGAGGCCTCTGGTGAA
GAGGCCAGAAGGCTGGGCGGTCTCCTGGCGCTGTACAGTAGCAGCACAGT
CAACGCAGCCAGGACACGGCGGTGTGTACACATAGTCGGTCTTAAGGCTC
CAGTTATCGGCAAAGGACTTGGACGCAGCGGAAGCGTAGTGTCGCAGTGG
TCCAAAGTACCAGTACTTATCCTTTGCCGCATCGATGTCCTCCAGCAGAC
BS13788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31873-PA | 1227 | CG31873-RA | 644..1227 | 600..17 | 2795 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 708..1291 | 600..17 | 2845 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270873..10271456 | 600..17 | 2845 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:53:07 has no hits.
BS13788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for
BS13788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 644..1227 | 17..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:17 Download gff for
BS13788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 708..1300 | 5..600 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:25 Download gff for
BS13788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 708..1300 | 5..600 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:25 Download gff for
BS13788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270873..10271466 | 4..600 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:17 Download gff for
BS13788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270873..10271466 | 4..600 | 98 | | Minus |
BS13788.5prime Sequence
600 bp (524 high quality bases) assembled on 2006-10-13
> BS13788.5prime
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
BS13788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31873-PA | 1227 | CG31873-RA | 1..584 | 17..600 | 2870 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-RA | 1300 | CG31873-RA | 65..648 | 17..600 | 2890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10270449..10270813 | 236..600 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 10270274..10270394 | 115..235 | 605 | 100 | Plus |
2L | 23513712 | 2L | 10270115..10270213 | 17..115 | 465 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:25:09 has no hits.
BS13788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for
BS13788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31873-PA | 1..583 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:20 Download gff for
BS13788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..647 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:58 Download gff for
BS13788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mulk-RA | 65..647 | 17..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:58 Download gff for
BS13788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
2L | 10270449..10270812 | 236..599 | 100 | | Plus |
2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:20 Download gff for
BS13788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10270115..10270212 | 17..114 | 97 | -> | Plus |
arm_2L | 10270274..10270394 | 115..235 | 100 | -> | Plus |
arm_2L | 10270449..10270812 | 236..599 | 100 | | Plus |
BS13788.pep Sequence
Translation from 16 to 1242
> BS13788.pep
MNYLRVIRNNWKKCTFGAAVSVYALQALKTHIEIEQHMREFASNIQANWI
SDRPKKVLVVMNPVANKKRSEKFFKNYCEPVLHLAGYSVEILRTNHIGHA
KTYVEELATLPDAIVVAGGDGTSSEVVTGLMRRRGNLCPITILPLGRSVQ
SASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSN
SQLKPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFADNWSL
KTDYVYTPPCPGCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRPL
VKNDNCSKKFEGSAEASQININCVQNKDNFAELESQFISSLQPGWEFIKQ
IPEVTCSKILPSLVVKSRTIQLHPDGEMGEKFYSIDGEEYDARPIKVSVV
PNAIKVFC*
BS13788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mulk-PA | 408 | CG31873-PA | 1..408 | 1..408 | 2141 | 100 | Plus |