Clone BS13788 Report

Search the DGRC for BS13788

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMulk-RA
Protein status:BS13788.pep: full length peptide match
Sequenced Size:1259

Clone Sequence Records

BS13788.complete Sequence

1259 bp assembled on 2009-12-07

GenBank Submission: KX805056

> BS13788.complete
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA
AGAAGATGGCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTC
TGTCCTGGGGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGG
TACTTTGGACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGC
CGATAACTGGAGCCTTAAGACCGACTATGTGTACACACCGCCGTGTCCTG
GCTGCGTTGACTGTGCTGCTACTGTACAGCGCCAGGAGACCGCCCAGCCT
TCTGGCCTCTTCACCAGAGGCCTCATTAAGTACAAGAATAATCCGGGTGA
AACCAAGAGGCCGCTAGTCAAGAACGACAATTGCAGCAAGAAGTTCGAGG
GAAGCGCTGAAGCCAGCCAGATAAACATCAATTGTGTTCAAAACAAGGAT
AACTTTGCGGAGCTGGAAAGTCAGTTTATAAGCTCCCTGCAGCCGGGCTG
GGAGTTTATCAAACAAATTCCGGAAGTCACGTGCAGCAAAATTTTACCCA
GCTTGGTGGTTAAGAGCAGGACTATTCAACTGCATCCGGATGGTGAAATG
GGCGAGAAGTTTTACTCCATCGATGGCGAGGAGTATGATGCAAGACCCAT
TAAGGTATCTGTTGTTCCCAATGCTATTAAAGTTTTTTGTTGAAAGCTTT
CTAGACCAT

BS13788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1227 CG31873-PA 1..1227 17..1243 6030 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 65..1291 17..1243 6030 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270449..10271456 236..1243 4965 99.5 Plus
2L 23513712 2L 10270274..10270394 115..235 605 100 Plus
2L 23513712 2L 10270115..10270213 17..115 465 98 Plus
Blast to na_te.dros performed on 2014-11-28 01:53:58 has no hits.

BS13788.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:55 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
CG31873-RA 25..1250 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:54 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..1290 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:53 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
CG31873-RA 25..1250 17..1242 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:28 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..1290 17..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:28 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10270115..10270212 17..114 97 -> Plus
2L 10270274..10270394 115..235 100 -> Plus
2L 10270449..10271455 236..1242 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:54 Download gff for BS13788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270115..10270212 17..114 97 -> Plus
arm_2L 10270274..10270394 115..235 100 -> Plus
arm_2L 10270449..10271455 236..1242 99   Plus

BS13788.3prime Sequence

600 bp (523 high quality bases) assembled on 2006-10-13

> BS13788.3prime
ATGGTCTAGAAAGCTTTCAACAAAAAACTTTAATAGCATTGGGAACAACA
GATACCTTAATGGGTCTTGCATCATACTCCTCGCCATCGATGGAGTAAAA
CTTCTCGCCCATTTCACCATCCGGATGCAGTTGAATAGTCCTGCTCTTAA
CCACCAAGCTGGGTAAAATTTTGCTGCACGTGACTTCCGGAATTTGTTTG
ATAAACTCCCAGCCCGGCTGCAGGGAGCTTATAAACTGACTTTCCAGCTC
CGCAAAGTTATCCTTGTTTTGAACACAATTGATGTTTATCTGGCTGGCTT
CAGCGCTTCCCTCGAACTTCTTGCTGCAATTGTCGTTCTTGACTAGCGGC
CTCTTGGTTTCACCCGGATTATTCTTGTACTTAATGAGGCCTCTGGTGAA
GAGGCCAGAAGGCTGGGCGGTCTCCTGGCGCTGTACAGTAGCAGCACAGT
CAACGCAGCCAGGACACGGCGGTGTGTACACATAGTCGGTCTTAAGGCTC
CAGTTATCGGCAAAGGACTTGGACGCAGCGGAAGCGTAGTGTCGCAGTGG
TCCAAAGTACCAGTACTTATCCTTTGCCGCATCGATGTCCTCCAGCAGAC

BS13788.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31873-PA 1227 CG31873-RA 644..1227 600..17 2795 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 708..1291 600..17 2845 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270873..10271456 600..17 2845 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 12:53:07 has no hits.

BS13788.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for BS13788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 644..1227 17..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:17 Download gff for BS13788.3prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 708..1300 5..600 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:25 Download gff for BS13788.3prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 708..1300 5..600 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:25 Download gff for BS13788.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10270873..10271466 4..600 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:17 Download gff for BS13788.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270873..10271466 4..600 98   Minus

BS13788.5prime Sequence

600 bp (524 high quality bases) assembled on 2006-10-13

> BS13788.5prime
GAAGTTATCAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGA
AGAAATGCACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTG
AAAACTCACATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACAT
TCAGGCCAACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGA
ATCCGGTGGCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGC
GAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAA
TCACATTGGTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCG
ATGCCATTGTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACT
GGGCTGATGCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCT
GGGACGTTCGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCA
AGGACGTCGACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTC
AAGGATGAGAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGA

BS13788.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31873-PA 1227 CG31873-RA 1..584 17..600 2870 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-RA 1300 CG31873-RA 65..648 17..600 2890 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10270449..10270813 236..600 1825 100 Plus
2L 23513712 2L 10270274..10270394 115..235 605 100 Plus
2L 23513712 2L 10270115..10270213 17..115 465 98 Plus
Blast to na_te.dros performed on 2015-02-10 18:25:09 has no hits.

BS13788.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for BS13788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31873-PA 1..583 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:20 Download gff for BS13788.5prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..647 17..599 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:58 Download gff for BS13788.5prime
Subject Subject Range Query Range Percent Splice Strand
Mulk-RA 65..647 17..599 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:58 Download gff for BS13788.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10270115..10270212 17..114 97 -> Plus
2L 10270449..10270812 236..599 100   Plus
2L 10270274..10270394 115..235 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:20 Download gff for BS13788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10270115..10270212 17..114 97 -> Plus
arm_2L 10270274..10270394 115..235 100 -> Plus
arm_2L 10270449..10270812 236..599 100   Plus

BS13788.pep Sequence

Translation from 16 to 1242

> BS13788.pep
MNYLRVIRNNWKKCTFGAAVSVYALQALKTHIEIEQHMREFASNIQANWI
SDRPKKVLVVMNPVANKKRSEKFFKNYCEPVLHLAGYSVEILRTNHIGHA
KTYVEELATLPDAIVVAGGDGTSSEVVTGLMRRRGNLCPITILPLGRSVQ
SASKRINIFGVKDVDYVKSLSKALEPMLKDESQYQSVIRFDVINEEDGSN
SQLKPIFGLNGLSWGLLEDIDAAKDKYWYFGPLRHYASAASKSFADNWSL
KTDYVYTPPCPGCVDCAATVQRQETAQPSGLFTRGLIKYKNNPGETKRPL
VKNDNCSKKFEGSAEASQININCVQNKDNFAELESQFISSLQPGWEFIKQ
IPEVTCSKILPSLVVKSRTIQLHPDGEMGEKFYSIDGEEYDARPIKVSVV
PNAIKVFC*

BS13788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mulk-PA 408 CG31873-PA 1..408 1..408 2141 100 Plus