Clone BS13789 Report

Search the DGRC for BS13789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG11298-RA
Protein status:BS13789.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13789.3prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS13789.3prime
ATGGTCTAGAAAGCTTCTACTTGTGAATTTTGCCCCAAAATCGCGAAATA
GTGCTGGCGTTCTGCGCCTCGTAGAGATGAGTCAGTTTTCGGAGAAGCTT
CTCCTGCTTGGCCTCGTCCTTGCGCACCTGAACCTTGTGGTTGTGATCGC
TGAGGTTTCTCAGACGTTTCGAGATCTGGGCCGTCCGCTTGCGCACATGT
TCGTCCATGTCGCGAGTAATGCGATCTTGGGAGTCTAGCCAACTTTGGGT
GGTCTGGCGATGGTGACGATCCGTGATCAGCGCCACTCGCGCCAGACGAA
CGGACAGCTGCTCCACCTTGTGCTCACCCAGCCGATTGCGTCGCTCCTCC
GCCTCCTCCAGACGCTCCTCATGGGGGCGGGTCGGAAATGGGCGATACTT
GCGATGCAGTCCACTGGGGGGATCACTCCGCACAGGATCCTCCAAATGCA
CGTAAAAGGCCGATGAGTTGCTCATGTCGACTGATAACT

BS13789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-PA 459 CG11298-RA 1..459 475..17 2270 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-RA 569 CG11298-RA 65..523 475..17 2280 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22348371..22348829 475..17 2280 99.8 Minus
Blast to na_te.dros performed on 2015-02-02 18:04:55 has no hits.

BS13789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for BS13789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-PA 1..459 17..475 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:15 Download gff for BS13789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 6..475 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:27 Download gff for BS13789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 6..475 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:27 Download gff for BS13789.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22348371..22348837 6..475 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:15 Download gff for BS13789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18235876..18236342 6..475 98   Minus

BS13789.5prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS13789.5prime
GAAGTTATCAGTCGACATGAGCAACTCATCGGCCTTTTACGTGCATTTGG
AGGATCCTGTGCGGAGTGATCCCCCCAGTGGACTGCATCGCAAGTATCGC
CCATTTCCGACCCGCCCCCATGAGGAGCGTCTGGAGGAGGCGGAGGAGCG
ACGCAATCGGCTGGGTGAGCACAAGGTGGAGCAGCTGTCCGTTCGTCTGG
CGCGAGTGGCGCTGATCACGGATCGTCACCATCGCCAGACCACCCAAAGT
TGGCTAGACTCCCAAGATCGCATTACTCGCGACATGGACGAACATGTGCG
CAAGCGGACGGCCCAGATCTCGAAACGTCTGAGAAACCTCAGCGATCACA
ACCACAAGGTTCAGGTGCGCAAGGACGAGGCCAAGCAGGAGAAGCTTCTC
CGAAAACTGACTCATCTCTACGAGGCGCAGAACGCCAGCACTATTTCGCG
ATTTTGGGGCAAAATTCACAAGTAGAAGCTTTCTAGACC

BS13789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-PA 459 CG11298-RA 1..459 17..475 2270 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-RA 569 CG11298-RA 65..523 17..475 2280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22348371..22348829 17..475 2280 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 16:11:21 has no hits.

BS13789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:15 Download gff for BS13789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-PA 1..459 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:31 Download gff for BS13789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 17..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:32 Download gff for BS13789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 17..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:32 Download gff for BS13789.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22348371..22348837 17..486 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:31 Download gff for BS13789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18235876..18236342 17..486 98   Plus

BS13789.complete Sequence

491 bp assembled on 2006-11-01

> BS13789.complete
GAAGTTATCAGTCGACATGAGCAACTCATCGGCCTTTTACGTGCATTTGG
AGGATCCTGTGCGGAGTGATCCCCCCAGTGGACTGCATCGCAAGTATCGC
CCATTTCCGACCCGCCCCCATGAGGAGCGTCTGGAGGAGGCGGAGGAGCG
ACGCAATCGGCTGGGTGAGCACAAGGTGGAGCAGCTGTCCGTTCGTCTGG
CGCGAGTGGCGCTGATCACGGATCGTCACCATCGCCAGACCACCCAAAGT
TGGCTAGACTCCCAAGATCGCATTACTCGCGACATGGACGAACATGTGCG
CAAGCGGACGGCCCAGATCTCGAAACGTCTGAGAAACCTCAGCGATCACA
ACCACAAGGTTCAGGTGCGCAAGGACGAGGCCAAGCAGGAGAAGCTTCTC
CGAAAACTGACTCATCTCTACGAGGCGCAGAACGCCAGCACTATTTCGCG
ATTTTGGGGCAAAATTCACAAGTAGAAGCTTTCTAGACCAT

BS13789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-RA 459 CG11298-PA 1..459 17..475 2280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-RA 569 CG11298-RA 65..523 17..475 2280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22348371..22348829 17..475 2280 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:18:17 has no hits.

BS13789.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:03 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 1..459 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:55 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 17..486 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:27 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..523 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:03 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..531 17..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:53 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
CG11298-RA 65..523 17..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:53 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22348371..22348829 17..475 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:27 Download gff for BS13789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18235876..18236334 17..475 99   Plus

BS13789.pep Sequence

Translation from 16 to 474

> BS13789.pep
MSNSSAFYVHLEDPVRSDPPSGLHRKYRPFPTRPHEERLEEAEERRNRLG
EHKVEQLSVRLARVALITDRHHRQTTQSWLDSQDRITRDMDEHVRKRTAQ
ISKRLRNLSDHNHKVQVRKDEAKQEKLLRKLTHLYEAQNASTISRFWGKI
HK*

BS13789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11298-PA 152 CG11298-PA 1..152 1..152 796 100 Plus