Clone Sequence Records
BS13789.3prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS13789.3prime
ATGGTCTAGAAAGCTTCTACTTGTGAATTTTGCCCCAAAATCGCGAAATA
GTGCTGGCGTTCTGCGCCTCGTAGAGATGAGTCAGTTTTCGGAGAAGCTT
CTCCTGCTTGGCCTCGTCCTTGCGCACCTGAACCTTGTGGTTGTGATCGC
TGAGGTTTCTCAGACGTTTCGAGATCTGGGCCGTCCGCTTGCGCACATGT
TCGTCCATGTCGCGAGTAATGCGATCTTGGGAGTCTAGCCAACTTTGGGT
GGTCTGGCGATGGTGACGATCCGTGATCAGCGCCACTCGCGCCAGACGAA
CGGACAGCTGCTCCACCTTGTGCTCACCCAGCCGATTGCGTCGCTCCTCC
GCCTCCTCCAGACGCTCCTCATGGGGGCGGGTCGGAAATGGGCGATACTT
GCGATGCAGTCCACTGGGGGGATCACTCCGCACAGGATCCTCCAAATGCA
CGTAAAAGGCCGATGAGTTGCTCATGTCGACTGATAACT
BS13789.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-PA | 459 | CG11298-RA | 1..459 | 475..17 | 2270 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-RA | 569 | CG11298-RA | 65..523 | 475..17 | 2280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22348371..22348829 | 475..17 | 2280 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:04:55 has no hits.
BS13789.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:14 Download gff for
BS13789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-PA | 1..459 | 17..475 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:15 Download gff for
BS13789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 6..475 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:27 Download gff for
BS13789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 6..475 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:27 Download gff for
BS13789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22348371..22348837 | 6..475 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:15 Download gff for
BS13789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18235876..18236342 | 6..475 | 98 | | Minus |
BS13789.5prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS13789.5prime
GAAGTTATCAGTCGACATGAGCAACTCATCGGCCTTTTACGTGCATTTGG
AGGATCCTGTGCGGAGTGATCCCCCCAGTGGACTGCATCGCAAGTATCGC
CCATTTCCGACCCGCCCCCATGAGGAGCGTCTGGAGGAGGCGGAGGAGCG
ACGCAATCGGCTGGGTGAGCACAAGGTGGAGCAGCTGTCCGTTCGTCTGG
CGCGAGTGGCGCTGATCACGGATCGTCACCATCGCCAGACCACCCAAAGT
TGGCTAGACTCCCAAGATCGCATTACTCGCGACATGGACGAACATGTGCG
CAAGCGGACGGCCCAGATCTCGAAACGTCTGAGAAACCTCAGCGATCACA
ACCACAAGGTTCAGGTGCGCAAGGACGAGGCCAAGCAGGAGAAGCTTCTC
CGAAAACTGACTCATCTCTACGAGGCGCAGAACGCCAGCACTATTTCGCG
ATTTTGGGGCAAAATTCACAAGTAGAAGCTTTCTAGACC
BS13789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-PA | 459 | CG11298-RA | 1..459 | 17..475 | 2270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-RA | 569 | CG11298-RA | 65..523 | 17..475 | 2280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22348371..22348829 | 17..475 | 2280 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:11:21 has no hits.
BS13789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:15 Download gff for
BS13789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-PA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:31 Download gff for
BS13789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 17..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:32 Download gff for
BS13789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 17..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:32 Download gff for
BS13789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22348371..22348837 | 17..486 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:31 Download gff for
BS13789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18235876..18236342 | 17..486 | 98 | | Plus |
BS13789.complete Sequence
491 bp assembled on 2006-11-01
> BS13789.complete
GAAGTTATCAGTCGACATGAGCAACTCATCGGCCTTTTACGTGCATTTGG
AGGATCCTGTGCGGAGTGATCCCCCCAGTGGACTGCATCGCAAGTATCGC
CCATTTCCGACCCGCCCCCATGAGGAGCGTCTGGAGGAGGCGGAGGAGCG
ACGCAATCGGCTGGGTGAGCACAAGGTGGAGCAGCTGTCCGTTCGTCTGG
CGCGAGTGGCGCTGATCACGGATCGTCACCATCGCCAGACCACCCAAAGT
TGGCTAGACTCCCAAGATCGCATTACTCGCGACATGGACGAACATGTGCG
CAAGCGGACGGCCCAGATCTCGAAACGTCTGAGAAACCTCAGCGATCACA
ACCACAAGGTTCAGGTGCGCAAGGACGAGGCCAAGCAGGAGAAGCTTCTC
CGAAAACTGACTCATCTCTACGAGGCGCAGAACGCCAGCACTATTTCGCG
ATTTTGGGGCAAAATTCACAAGTAGAAGCTTTCTAGACCAT
BS13789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-RA | 459 | CG11298-PA | 1..459 | 17..475 | 2280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-RA | 569 | CG11298-RA | 65..523 | 17..475 | 2280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22348371..22348829 | 17..475 | 2280 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:18:17 has no hits.
BS13789.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:03 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:55 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 17..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:27 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..523 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:03 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..531 | 17..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:53 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11298-RA | 65..523 | 17..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:53 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22348371..22348829 | 17..475 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:27 Download gff for
BS13789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18235876..18236334 | 17..475 | 99 | | Plus |
BS13789.pep Sequence
Translation from 16 to 474
> BS13789.pep
MSNSSAFYVHLEDPVRSDPPSGLHRKYRPFPTRPHEERLEEAEERRNRLG
EHKVEQLSVRLARVALITDRHHRQTTQSWLDSQDRITRDMDEHVRKRTAQ
ISKRLRNLSDHNHKVQVRKDEAKQEKLLRKLTHLYEAQNASTISRFWGKI
HK*
BS13789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11298-PA | 152 | CG11298-PA | 1..152 | 1..152 | 796 | 100 | Plus |