Clone Sequence Records
BS13790.3prime Sequence
593 bp (529 high quality bases) assembled on 2006-10-13
> BS13790.3prime
ATGGTCTAGAAAGCTTCTAGCACGTCAAGTCAAACTTAACGACTCCGTCG
TAGTCTGGACCAAATTCAAAGATTGGCTTTTTTTCCCACGGTCGGTTAAA
GCTCGCGGAGTAGGTGGTCTGCATGTTACTGATCTCGTCCAGCATTTTCT
CGCACTTGAACCGAAAGAGGTAATTGTGTGTCTTCGTAAGATTTCCGAAG
GCTTGCAGTCTGTCCACGTCCAGCGGCTGCTTCGGAGGACCGTTTTTGTC
CTTTTCGCCACTCGCGTGTATAAGACGCAGTCGAGGAATTTCCTGGAACT
CCAGGGTATTGGTGGTAGTGAAGTTCCTCTTGAGTAGCTCATCGTCCACC
AGGTTCAAGCTAGATCGCCTATTCCTTATAAAGTTCTTGTAAGCCAATTT
GCGATGATCCACAAACAAGGGTACTGCCTCGGCGCCAACGAAGGGTGCAG
TAGTGTAGGTGTCGTGGCAGAGCGAACCTATGGAGCTCGCAACCACTCAC
ACGGAGTCCTGGCAGGATGGCATTGCTCTGCTCCTCGACTGCGTAGCGGC
GCTCCGCCCAGTTGCCAATCAGCACCTCCTTGCCGAAAGGCGT
BS13790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-PA | 618 | CG14448-RA | 160..618 | 475..17 | 2295 | 100 | Minus |
| CG14448-PA | 618 | CG14448-RA | 43..160 | 593..476 | 590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-RA | 809 | CG14448-RA | 125..704 | 593..13 | 2865 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22788563..22789142 | 593..13 | 2840 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:06 has no hits.
BS13790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:15 Download gff for
BS13790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-PA | 43..618 | 17..593 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:59 Download gff for
BS13790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 125..704 | 13..593 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:58 Download gff for
BS13790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 125..704 | 13..593 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:58 Download gff for
BS13790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22788563..22789142 | 13..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:59 Download gff for
BS13790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22781663..22782242 | 13..593 | 99 | | Minus |
BS13790.5prime Sequence
590 bp (529 high quality bases) assembled on 2006-10-13
> BS13790.5prime
GAAGTTATCAGTCGACATGAACAAAAGCCAAAAGTCCCTGGCGGACGACA
TGGCCTCGACGCCTTTCGGCAAGGAGGTGCTGATTGGCAACTGGGCGGAG
CGCCGCTACGCAGTCGAGGAGCAGAGCAATGCCATCCTGCCAGGACTCCG
TGTGAGTGGTTGCGAGCTCCATAGGTCGCTCTGCCACGACACCTACACTA
CTGCACCCTTCGTTGGCGCCGAGGCAGTACCCTTGTTTGTGGATCATCGC
AAATTGGCTTACAAGAACTTTATAAGGAATAGGCGATCTAGCTTGAACCT
GGTGGACGATGAGCTACTCAAGAGGAACTTCACTACCACCAATACCCTGG
AGTTCCAGGAAATTCCTCGACTGCGTCTTATACACGCGAGTGGCGAAAAG
GACAAAAACGGTCCTCCGAAGCAGCCGCTGGACGTGGACAGACTGCAAGC
CTTCGGAAATCTTACGAAGACACACAATTACCTCTTTCGGTTCAAGTGCG
AGAAAATGCTGGACGAGATCAGTAACATGCAGACCACCTACTCCGCGAGC
TTTAACCGACCGTGGGAAAAAAAGCCAATCTTTGAATTTG
BS13790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-PA | 618 | CG14448-RA | 1..574 | 17..590 | 2870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-RA | 809 | CG14448-RA | 83..656 | 17..590 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22788521..22789094 | 17..590 | 2870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:56 has no hits.
BS13790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:16 Download gff for
BS13790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-PA | 1..574 | 17..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:07 Download gff for
BS13790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 80..656 | 10..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:23 Download gff for
BS13790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 80..656 | 10..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:23 Download gff for
BS13790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22788518..22789094 | 10..590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:07 Download gff for
BS13790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22781618..22782194 | 10..590 | 99 | | Plus |
BS13790.complete Sequence
650 bp assembled on 2006-11-01
GenBank Submission: FJ637529
> BS13790.complete
GAAGTTATCAGTCGACATGAACAAAAGCCAAAAGTCCCTGGCGGACGACA
TGGCCTCGACGCCTTTCGGCAAGGAGGTGCTGATTGGCAACTGGGCGGAG
CGCCGCTACGCAGTCGAGGAGCAGAGCAATGCCATCCTGCCAGGACTCCG
TGTGAGTGGTTGCGAGCTCCATAGGTCGCTCTGCCACGACACCTACACTA
CTGCACCCTTCGTTGGCGCCGAGGCAGTACCCTTGTTTGTGGATCATCGC
AAATTGGCTTACAAGAACTTTATAAGGAATAGGCGATCTAGCTTGAACCT
GGTGGACGATGAGCTACTCAAGAGGAACTTCACTACCACCAATACCCTGG
AGTTCCAGGAAATTCCTCGACTGCGTCTTATACACGCGAGTGGCGAAAAG
GACAAAAACGGTCCTCCGAAGCAGCCGCTGGACGTGGACAGACTGCAAGC
CTTCGGAAATCTTACGAAGACACACAATTACCTCTTTCGGTTCAAGTGCG
AGAAAATGCTGGACGAGATCAGTAACATGCAGACCACCTACTCCGCGAGC
TTTAACCGACCGTGGGAAAAAAAGCCAATCTTTGAATTTGGTCCAGACTA
CGACGGAGTCGTTAAGTTTGACTTGACGTGCTAGAAGCTTTCTAGACCAT
BS13790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-RA | 618 | CG14448-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-RA | 809 | CG14448-RA | 83..704 | 17..638 | 3095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22788521..22789142 | 17..638 | 3095 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:06:54 has no hits.
BS13790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:31 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:52 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 80..704 | 10..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:01 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 83..700 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:31 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 80..704 | 10..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:38 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14448-RA | 83..700 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:38 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22788521..22789138 | 17..634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:01 Download gff for
BS13790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22781621..22782238 | 17..634 | 100 | | Plus |
BS13790.pep Sequence
Translation from 16 to 633
> BS13790.pep
MNKSQKSLADDMASTPFGKEVLIGNWAERRYAVEEQSNAILPGLRVSGCE
LHRSLCHDTYTTAPFVGAEAVPLFVDHRKLAYKNFIRNRRSSLNLVDDEL
LKRNFTTTNTLEFQEIPRLRLIHASGEKDKNGPPKQPLDVDRLQAFGNLT
KTHNYLFRFKCEKMLDEISNMQTTYSASFNRPWEKKPIFEFGPDYDGVVK
FDLTC*
BS13790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14448-PA | 205 | CG14448-PA | 1..205 | 1..205 | 1089 | 100 | Plus |
