Clone Sequence Records
BS13791.3prime Sequence
726 bp (653 high quality bases) assembled on 2006-10-13
> BS13791.3prime
ATGGTCTAGAAAGCTTCTAACTCTGCAAATGATCCTCACAGCAGGCCGTA
TGGGTGGCATAGCAACGGCACTGGCCAGTGGGACAGCAGCACTGCCTCAG
AATGGAGGTGCTGTAGGGGAACACGATGATCTTCCACTGCTGGTCAAGTT
CCAGGGTCTCGTAGTGATAACCTCGCTTGTAGACCACCATGGGCGTGTGG
TCCAAGTAGTGGGGCATAATCTCCATCAGGCAGGCATCCATGCAGTTCAC
AAAGAACTGCACACAATTGATGAGCTTGGCCAAGATGTAGACACCTGTGA
TGGTCTCATCGAAGAAGTAGACCGCATCGAATTTGGGCGTCTCCTTGCCA
AAGATCAGCGCCACCTCCCGCATGCTACTGAAGGTATGCAGGGTGGTACA
TCCCGAGGGTCCGCTGGGAAAGAACAAGTGGGTGACGCCTCCCGTCACCA
AGATGGGACTGGCGCAGGCCGGAGCATCGGCCACATCGGCCAGAATATAT
TTCACTGGTCGCAACCCATACTTTAGCTCATTAACGGCTCTTATGAAATT
CGGATGATTGGCCACATGTGGCTTTAGCTGCCTGAACCGACTCCTCACCC
TCTCGATGAACTCGTCCCGGATCGAATGATGCACTGCCACGGTGGCCATG
GGAAATGGCTGGAACGGCTCGTGCATCAACTCGGCCAAACAATATGCAGC
CGTATTCAAGTCTCCCTCCTTACAAA
BS13791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 840 | CG5623-RA | 131..840 | 726..17 | 3400 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 186..895 | 726..17 | 3460 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766478..15767187 | 17..726 | 3460 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:34:27 has no hits.
BS13791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:16 Download gff for
BS13791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 134..840 | 17..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:02 Download gff for
BS13791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 189..895 | 17..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:43 Download gff for
BS13791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 189..895 | 17..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:43 Download gff for
BS13791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15766478..15767184 | 17..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:02 Download gff for
BS13791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592200..11592906 | 17..723 | 99 | | Plus |
BS13791.5prime Sequence
700 bp (623 high quality bases) assembled on 2006-10-13
> BS13791.5prime
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTAACAGCGA
BS13791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 840 | CG5623-RA | 1..677 | 17..693 | 3260 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 56..739 | 17..700 | 3315 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766634..15767239 | 700..95 | 2925 | 98.8 | Minus |
3R | 32079331 | 3R | 15767306..15767383 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:47:18 has no hits.
BS13791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:17 Download gff for
BS13791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-PA | 1..683 | 17..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:16 Download gff for
BS13791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..738 | 17..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:09 Download gff for
BS13791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..738 | 17..699 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:09 Download gff for
BS13791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15767306..15767383 | 17..94 | 100 | | Minus |
3R | 15766635..15767239 | 95..699 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:16 Download gff for
BS13791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592357..11592961 | 95..699 | 98 | <- | Minus |
arm_3R | 11593028..11593105 | 17..94 | 100 | | Minus |
BS13791.complete Sequence
872 bp assembled on 2006-11-01
GenBank Submission: FJ637530
> BS13791.complete
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTTAGAAGCTTTCTAGACCAT
BS13791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 840 | CG5623-PA | 1..840 | 17..856 | 4110 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-RA | 1127 | CG5623-RA | 56..895 | 17..856 | 4110 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15766478..15767239 | 856..95 | 3720 | 99.2 | Minus |
3R | 32079331 | 3R | 15767306..15767383 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:09 has no hits.
BS13791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:33 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:41 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:59 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:34 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:44 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5623-RA | 56..895 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:44 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15766478..15767239 | 95..856 | 99 | <- | Minus |
3R | 15767306..15767383 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:59 Download gff for
BS13791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11592200..11592961 | 95..856 | 99 | <- | Minus |
arm_3R | 11593028..11593105 | 17..94 | 100 | | Minus |
BS13791.pep Sequence
Translation from 16 to 855
> BS13791.pep
MCEIKQNFVTHDLVHNLRCNKRSPKVRHLMKKTRAWPGARFMCVCKEGDL
NTAAYCLAELMHEPFQPFPMATVAVHHSIRDEFIERVRSRFRQLKPHVAN
HPNFIRAVNELKYGLRPVKYILADVADAPACASPILVTGGVTHLFFPSGP
SGCTTLHTFSSMREVALIFGKETPKFDAVYFFDETITGVYILAKLINCVQ
FFVNCMDACLMEIMPHYLDHTPMVVYKRGYHYETLELDQQWKIIVFPYST
SILRQCCCPTGQCRCYATHTACCEDHLQS*
BS13791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5623-PA | 279 | CG5623-PA | 1..279 | 1..279 | 1536 | 100 | Plus |
CG11634-PB | 298 | CG11634-PB | 32..280 | 9..253 | 319 | 32.7 | Plus |
CG11634-PA | 298 | CG11634-PA | 32..280 | 9..253 | 319 | 32.7 | Plus |
CG2336-PA | 322 | CG2336-PA | 98..309 | 36..250 | 313 | 32.1 | Plus |
CG12516-PB | 300 | CG12516-PB | 82..296 | 35..250 | 254 | 30.7 | Plus |