Clone BS13791 Report

Search the DGRC for BS13791

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:137
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG5623-RA
Protein status:BS13791.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13791.3prime Sequence

726 bp (653 high quality bases) assembled on 2006-10-13

> BS13791.3prime
ATGGTCTAGAAAGCTTCTAACTCTGCAAATGATCCTCACAGCAGGCCGTA
TGGGTGGCATAGCAACGGCACTGGCCAGTGGGACAGCAGCACTGCCTCAG
AATGGAGGTGCTGTAGGGGAACACGATGATCTTCCACTGCTGGTCAAGTT
CCAGGGTCTCGTAGTGATAACCTCGCTTGTAGACCACCATGGGCGTGTGG
TCCAAGTAGTGGGGCATAATCTCCATCAGGCAGGCATCCATGCAGTTCAC
AAAGAACTGCACACAATTGATGAGCTTGGCCAAGATGTAGACACCTGTGA
TGGTCTCATCGAAGAAGTAGACCGCATCGAATTTGGGCGTCTCCTTGCCA
AAGATCAGCGCCACCTCCCGCATGCTACTGAAGGTATGCAGGGTGGTACA
TCCCGAGGGTCCGCTGGGAAAGAACAAGTGGGTGACGCCTCCCGTCACCA
AGATGGGACTGGCGCAGGCCGGAGCATCGGCCACATCGGCCAGAATATAT
TTCACTGGTCGCAACCCATACTTTAGCTCATTAACGGCTCTTATGAAATT
CGGATGATTGGCCACATGTGGCTTTAGCTGCCTGAACCGACTCCTCACCC
TCTCGATGAACTCGTCCCGGATCGAATGATGCACTGCCACGGTGGCCATG
GGAAATGGCTGGAACGGCTCGTGCATCAACTCGGCCAAACAATATGCAGC
CGTATTCAAGTCTCCCTCCTTACAAA

BS13791.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 840 CG5623-RA 131..840 726..17 3400 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 186..895 726..17 3460 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766478..15767187 17..726 3460 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 17:34:27 has no hits.

BS13791.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:16 Download gff for BS13791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 134..840 17..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:02 Download gff for BS13791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 189..895 17..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:43 Download gff for BS13791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 189..895 17..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:43 Download gff for BS13791.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15766478..15767184 17..723 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:02 Download gff for BS13791.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592200..11592906 17..723 99   Plus

BS13791.5prime Sequence

700 bp (623 high quality bases) assembled on 2006-10-13

> BS13791.5prime
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTAACAGCGA

BS13791.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 840 CG5623-RA 1..677 17..693 3260 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 56..739 17..700 3315 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766634..15767239 700..95 2925 98.8 Minus
3R 32079331 3R 15767306..15767383 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:47:18 has no hits.

BS13791.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:17 Download gff for BS13791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-PA 1..683 17..699 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:16 Download gff for BS13791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..738 17..699 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:09 Download gff for BS13791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..738 17..699 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:09 Download gff for BS13791.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15767306..15767383 17..94 100   Minus
3R 15766635..15767239 95..699 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:16 Download gff for BS13791.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592357..11592961 95..699 98 <- Minus
arm_3R 11593028..11593105 17..94 100   Minus

BS13791.complete Sequence

872 bp assembled on 2006-11-01

GenBank Submission: FJ637530

> BS13791.complete
GAAGTTATCAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACG
ATCTGGTGCACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCAC
CTCATGAAAAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTG
TAAGGAGGGAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGC
ACGAGCCGTTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCG
ATCCGGGACGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAA
GCCACATGTGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAA
AGTATGGGTTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCT
CCGGCCTGCGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTT
CTTTCCCAGCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCA
TGCGGGAGGTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCG
GTCTACTTCTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCT
CATCAATTGTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGG
AGATTATGCCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGA
GGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGT
GTTCCCCTACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCC
AGTGCCGTTGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAG
AGTTAGAAGCTTTCTAGACCAT

BS13791.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 840 CG5623-PA 1..840 17..856 4110 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-RA 1127 CG5623-RA 56..895 17..856 4110 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15766478..15767239 856..95 3720 99.2 Minus
3R 32079331 3R 15767306..15767383 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:04:09 has no hits.

BS13791.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:33 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:41 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:59 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:34 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:44 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
CG5623-RA 56..895 17..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:44 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15766478..15767239 95..856 99 <- Minus
3R 15767306..15767383 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:59 Download gff for BS13791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11592200..11592961 95..856 99 <- Minus
arm_3R 11593028..11593105 17..94 100   Minus

BS13791.pep Sequence

Translation from 16 to 855

> BS13791.pep
MCEIKQNFVTHDLVHNLRCNKRSPKVRHLMKKTRAWPGARFMCVCKEGDL
NTAAYCLAELMHEPFQPFPMATVAVHHSIRDEFIERVRSRFRQLKPHVAN
HPNFIRAVNELKYGLRPVKYILADVADAPACASPILVTGGVTHLFFPSGP
SGCTTLHTFSSMREVALIFGKETPKFDAVYFFDETITGVYILAKLINCVQ
FFVNCMDACLMEIMPHYLDHTPMVVYKRGYHYETLELDQQWKIIVFPYST
SILRQCCCPTGQCRCYATHTACCEDHLQS*

BS13791.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5623-PA 279 CG5623-PA 1..279 1..279 1536 100 Plus
CG11634-PB 298 CG11634-PB 32..280 9..253 319 32.7 Plus
CG11634-PA 298 CG11634-PA 32..280 9..253 319 32.7 Plus
CG2336-PA 322 CG2336-PA 98..309 36..250 313 32.1 Plus
CG12516-PB 300 CG12516-PB 82..296 35..250 254 30.7 Plus