Clone Sequence Records
BS13792.3prime Sequence
647 bp (542 high quality bases) assembled on 2006-10-13
> BS13792.3prime
ATGGTCTAGAAAGCTTTTACAAACGAGTCTTGCCATAATAGGCGCCTGCG
ACAGCGGACAGTATAATGATTACTATGGCGGCCATGTAGAAGAAAGTGCG
CCCAATCGCCTGGTCACGCAAGCCGTCGATCTGGTCTGTGAGGGCCATAT
GCTCGTCCTCCAGCATGCTGACTTGCTTGAGCAACTTGGCCATTGGCTCA
CTGACTTCCTGGGCATCAAAATGGACCTCTCCGTCCTTGTTGTCCGTGGA
TATTACAGCTGAACCTCCCGCCTGACGGAAATCGTCCTCCTTCGAAGGGA
CTAGCTCACATTTGATCTTGGTTTCCCGAGTTTCATTCGGGTTCTGCATC
TTCCAAAACTCCTGCACATCGCTTATGTCACCAGTCACCTCGGCGGCCAG
GAGAAGGAACTTATGACGCTTCTTTATCTGCTCCTGCAGAATTGGCTGCA
TGAATATGTCAACGCTGACCTTCTGCTCGGGCCCCAAGACACCGATGTTG
GGGCGTACATAAAAAAGTTTTGGAGTGGTGGTCTTCATCTTGAAGGCCAT
TCGCTGGGTCTTACTGGTGTTCTTGATGACTAGCTTCCTGCTCACCGAGC
GGTTGATTGGTCCCTCAAAGACGATCACATCGCACGGGTCTAGCGCA
BS13792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7919-PA | 657 | fan-RA | 27..657 | 647..17 | 3130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 173..804 | 647..16 | 3145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109304..8109935 | 647..16 | 3145 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:51:47 has no hits.
BS13792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:17 Download gff for
BS13792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7919-PA | 28..657 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:12 Download gff for
BS13792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 174..810 | 10..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:50 Download gff for
BS13792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 174..810 | 10..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:50 Download gff for
BS13792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109305..8109941 | 10..646 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:12 Download gff for
BS13792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102405..8103041 | 10..646 | 99 | | Minus |
BS13792.5prime Sequence
652 bp (601 high quality bases) assembled on 2006-10-13
> BS13792.5prime
GAAGTTATCAGTCGACATGTCCGACAATACCGAGAGCAAACTTGCGCTAG
ACCCGTGCGATGTGATCGTCTTTGAGGGACCATTCAACCGCTCGGTGAGC
AGGAAGCTAGTCATCAAGAACACCAGTAAGACCCAGCGAATGGCCTTCAA
GATGAAGACCACCACTCCAAAACTTTTTTATGTACGCCCCAACATCGGTG
TCTTGGGGCCCGAGCAGAAGGTCAGCGTTGACATATTCATGCAGCCAATT
CTGCAGGAGCAGATAAAGAAGCGTCATAAGTTCCTTCTCCTGGCCGCCGA
GGTGACTGGTGACATAAGCGATGTGCAGGAGTTTTGGAAGATGCAGAACC
CGAATGAAACTCGGGAAACCAAGATCAAATGTGAGCTAGTCCCTTCGAAG
GAGGACGATTTCCGTCAGGCGGGAGGTTCAGCTGTAATATCCACGGACAA
CAAGGACGGAGAGGTCCATTTTGATGCCCAGGAAGTCAGTGAGCCAATGG
CCAAGTTGCTCAAGCAAGTCAGCATGCTGGAGGACGAGCATATGGCCCTC
ACAGACCAGATCGACGGCTTGCGTGACCAGGCGATTGGGCGCACTTTCTT
CTACATGGCCGCCATAGTAATCATTATACTGTCCGCTGTCGCAAGCGCCT
AT
BS13792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7919-PA | 657 | fan-RA | 1..636 | 17..652 | 3155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 147..782 | 17..652 | 3165 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109278..8109913 | 17..652 | 3165 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:02 has no hits.
BS13792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:17 Download gff for
BS13792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7919-PA | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:11 Download gff for
BS13792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..782 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:39 Download gff for
BS13792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..782 | 17..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:39 Download gff for
BS13792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109278..8109913 | 17..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:11 Download gff for
BS13792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102378..8103013 | 17..652 | 99 | | Plus |
BS13792.complete Sequence
689 bp assembled on 2006-11-01
GenBank Submission: FJ637531
> BS13792.complete
GAAGTTATCAGTCGACATGTCCGACAATACCGAGAGCAAACTTGCGCTAG
ACCCGTGCGATGTGATCGTCTTTGAGGGACCATTCAACCGCTCGGTGAGC
AGGAAGCTAGTCATCAAGAACACCAGTAAGACCCAGCGAATGGCCTTCAA
GATGAAGACCACCACTCCAAAACTTTTTTATGTACGCCCCAACATCGGTG
TCTTGGGGCCCGAGCAGAAGGTCAGCGTTGACATATTCATGCAGCCAATT
CTGCAGGAGCAGATAAAGAAGCGTCATAAGTTCCTTCTCCTGGCCGCCGA
GGTGACTGGTGACATAAGCGATGTGCAGGAGTTTTGGAAGATGCAGAACC
CGAATGAAACTCGGGAAACCAAGATCAAATGTGAGCTAGTCCCTTCGAAG
GAGGACGATTTCCGTCAGGCGGGAGGTTCAGCTGTAATATCCACGGACAA
CAAGGACGGAGAGGTCCATTTTGATGCCCAGGAAGTCAGTGAGCCAATGG
CCAAGTTGCTCAAGCAAGTCAGCATGCTGGAGGACGAGCATATGGCCCTC
ACAGACCAGATCGACGGCTTGCGTGACCAGGCGATTGGGCGCACTTTCTT
CTACATGGCCGCCATAGTAATCATTATACTGTCCGCTGTCGCAGGCGCCT
ATTATGGCAAGACTCGTTTGTAAAAGCTTTCTAGACCAT
BS13792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 657 | CG7919-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-RA | 912 | CG7919-RA | 147..804 | 17..674 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8109278..8109935 | 17..674 | 3290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:21:17 has no hits.
BS13792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:32 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:54 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 110..773 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:01 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..801 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:32 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 110..773 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:41 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fan-RA | 147..801 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:41 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8109278..8109932 | 17..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:01 Download gff for
BS13792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8102378..8103032 | 17..671 | 100 | | Plus |
BS13792.pep Sequence
Translation from 16 to 672
> BS13792.pep
MSDNTESKLALDPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTT
PKLFYVRPNIGVLGPEQKVSVDIFMQPILQEQIKKRHKFLLLAAEVTGDI
SDVQEFWKMQNPNETRETKIKCELVPSKEDDFRQAGGSAVISTDNKDGEV
HFDAQEVSEPMAKLLKQVSMLEDEHMALTDQIDGLRDQAIGRTFFYMAAI
VIIILSAVAGAYYGKTRL*
BS13792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fan-PA | 218 | CG7919-PA | 1..218 | 1..218 | 1106 | 100 | Plus |
| Vap-33A-PE | 269 | CG5014-PE | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PC | 269 | CG5014-PC | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PB | 269 | CG5014-PB | 10..145 | 9..140 | 210 | 35 | Plus |
| Vap-33A-PA | 235 | CG5014-PA | 10..234 | 9..213 | 208 | 27.8 | Plus |
