Clone Sequence Records
BS13794.complete Sequence
605 bp assembled on 2010-02-09
GenBank Submission: KX803459
> BS13794.complete
GAAGTTATCAGTCGACATGTCTGATGTGGAGCAAGAAGCCTCTGGAGACG
TTGATAATGAGCAAAATGAAGGACAAGAAGCTGCTGAAGATTTTGAGGGA
GAGGGCGAAGGAGACGAACAGGACGTTGAAGAGGAAGATAAGTTCGAGGT
GGAGGAGAAGGATCCCTTTGAGCTCCTCAATGAGAGCGATGAAGACGATG
AAGAGCAACAGGCAATGTACAAGGAGTATCAGGAGGTGGTCAACGCTATT
GATGCGCAGAACAGGATTATAAAAGAGCTCAAGGCAAAGTCCAATCGACT
GATGTTCAAGAAGTGCAAGACTTATAGAGACAAGCAGGAATACAAACAAC
TTAGGGTCTGTCAGGAGCATGAGGAGATCCATTTAAAGGTTCTCGTGAAT
AGAGCCATGCACCTCCAAAACTTCGGTTCACCTAGGCGCTACAGAGATAT
AGAAATGGAAGTCACAGAGGACGAGAAGAGCTACTTTTATACTGAACTAC
AATCGACCTTATCAGGCTTTTGTCCCACGGATTCGGCTGACGAATATGAG
TCGGATTCTGAATCGGATAATGGACTATGTTGTACCTAGAAGCTTTCTAG
ACCAT
BS13794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-RB | 573 | CG13405-PB | 1..573 | 17..589 | 2865 | 100 | Plus |
| CG13405-RA | 573 | CG13405-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-RB | 1326 | CG13405-RB | 123..695 | 17..589 | 2865 | 100 | Plus |
| CG13405-RA | 785 | CG13405-RA | 61..633 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 74638..75210 | 589..17 | 2865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:56 has no hits.
BS13794.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:55 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:35 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..629 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:58 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 61..633 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:44 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..629 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:13 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 61..633 | 17..589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:13 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 74638..75210 | 17..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:58 Download gff for
BS13794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 74638..75210 | 17..589 | 100 | | Minus |
BS13794.5prime Sequence
582 bp (581 high quality bases) assembled on 2006-10-13
> BS13794.5prime
GAAGTTATCAGTCGACATGTCTGATGTGGAGCAAGAAGCCTCTGGAGACG
TTGATAATGAGCAAAATGAAGGACAAGAAGCTGCTGAAGATTTTGAGGGA
GAGGGCGAAGGAGACGAACAGGACGTTGAAGAGGAAGATAAGTTCGAGGT
GGAGGAGAAGGATCCCTTTGAGCTCCTCAATGAGAGCGATGAAGACGATG
AAGAGCAACAGGCAATGTACAAGGAGTATCAGGAGGTGGTCAACGCTATT
GATGCGCAGAACAGGATTATAAAAGAGCTCAAGGCAAAGTCCAATCGACT
GATGTTCAAGAAGTGCAAGACTTATAGAGACAAGCAGGAATACAAACAAC
TTAGGGTCTGTCAGGAGCATGAGGAGATCCATTTAAAGGTTCTCGTGAAT
AGAGCCATGCACCTCCAAAACTTCGGTTCACCTAGGCGCTACAGAGATAT
AGAAATGGAAGTCACAGAGGACGAGAAGAGCTACTTTTATACTGAACTAC
AATCGACCTTATCAGGCTTTTGTCCCACGGATTCGGCTGACGAATATGAG
TCGGATTCTGAATCGGATAATGGACTATGTTG
BS13794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-PA | 573 | CG13405-RA | 1..566 | 17..582 | 2830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-RB | 1326 | CG13405-RB | 123..688 | 17..582 | 2830 | 100 | Plus |
| CG13405-RA | 785 | CG13405-RA | 61..626 | 17..582 | 2830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 74645..75210 | 582..17 | 2830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:19:19 has no hits.
BS13794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:18 Download gff for
BS13794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-PA | 1..566 | 17..582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:15 Download gff for
BS13794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..626 | 10..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:23 Download gff for
BS13794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..626 | 10..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:23 Download gff for
BS13794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 74645..75214 | 10..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:15 Download gff for
BS13794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 74645..75214 | 10..582 | 99 | | Minus |
BS13794.3prime Sequence
603 bp (581 high quality bases) assembled on 2006-10-13
> BS13794.3prime
ATGGTCTAGAAAGCTTCTAGGTACAACATAGTCCATTATCCGATTCAGAA
TCCGACTCATATTCGTCAGCCGAATCCGTGGGACAAAAGCCTGATAAGGT
CGATTGTAGTTCAGTATAAAAGTAGCTCTTCTCGTCCTCTGTGACTTCCA
TTTCTATATCTCTGTAGCGCCTAGGTGAACCGAAGTTTTGGAGGTGCATG
GCTCTATTCACGAGAACCTTTAAATGGATCTCCTCATGCTCCTGACAGAC
CCTAAGTTGTTTGTATTCCTGCTTGTCTCTATAAGTCTTGCACTTCTTGA
ACATCAGTCGATTGGACTTTGCCTTGAGCTCTTTTATAATCCTGTTCTGC
GCATCAATAGCGTTGACCACCTCCTGATACTCCTTGTACATTGCCTGTTG
CTCTTCATCGTCTTCATCGCTCTCATTGAGGAGCTCAAAGGGATCCTTCT
CCTCCACCTCGAACTTATCTTCCTCTTCAACGTCCTGTTCGTCTCCTTCG
CCCTCTCCCTCAAAATCTTCAGCAGCTTCTTGTCCTTCATTTTGCTCATT
ATCAACGTCTCCAGAGGCTTCTTGCTCCACATCAAACATGTCGACTGATA
ACT
BS13794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-PA | 573 | CG13405-RA | 6..573 | 584..17 | 2840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-RB | 1326 | CG13405-RB | 123..695 | 589..17 | 2850 | 99.8 | Minus |
| CG13405-RA | 785 | CG13405-RA | 61..633 | 589..17 | 2850 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 74638..75210 | 17..589 | 2850 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:01:54 has no hits.
BS13794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:18 Download gff for
BS13794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-PA | 1..573 | 17..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:02:12 Download gff for
BS13794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..637 | 9..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:13 Download gff for
BS13794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13405-RA | 57..637 | 9..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:13 Download gff for
BS13794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 74634..75214 | 9..596 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:02:12 Download gff for
BS13794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 74634..75214 | 9..596 | 98 | | Plus |
BS13794.pep Sequence
Translation from 16 to 588
> BS13794.pep
MSDVEQEASGDVDNEQNEGQEAAEDFEGEGEGDEQDVEEEDKFEVEEKDP
FELLNESDEDDEEQQAMYKEYQEVVNAIDAQNRIIKELKAKSNRLMFKKC
KTYRDKQEYKQLRVCQEHEEIHLKVLVNRAMHLQNFGSPRRYRDIEMEVT
EDEKSYFYTELQSTLSGFCPTDSADEYESDSESDNGLCCT*
BS13794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13405-PB | 190 | CG13405-PB | 1..190 | 1..190 | 997 | 100 | Plus |
| CG13405-PA | 190 | CG13405-PA | 1..190 | 1..190 | 997 | 100 | Plus |
| CG3213-PA | 676 | CG3213-PA | 9..138 | 25..153 | 253 | 42.7 | Plus |
