Clone Sequence Records
BS13795.3prime Sequence
690 bp (671 high quality bases) assembled on 2006-10-13
> BS13795.3prime
ATGGTCTAGAAAGCTTTTATTCCTTTTTCCTTTTGAAAACAATTGAGGTT
ACCACATTGCCCACCTTGCCGCCAAACTTAAAGGTCGGCGTGGGAATGGT
ATAGTACTTGACAAACTTCTCGGCAAAGCTATCCACCAGCTCGTCCTCGG
TCCAATTGCACGACGTGATTACAAACAGGCTGTCAGCAGTTCGCAGCAAC
TTCTCCACCGTGTCCAGGTAGAGAGCACGTTTCTCCTTGGCATTATCCGG
ACAAAGACTGACTGCATCGTAGGTTCCCTTGTCGTGCACCACGTCAAATT
GGCCCAGCTCGTTCTGCGGCTGGGTTAAGTCCGCCACCTTGTATGTGATG
CTCAGCTTGTTATCCTCCGCAATGTTTTGCGCCAGCTCGACGGCTTTGGG
AGAGTAGTCCACGCCGGTCAGGTCTCCGGTGAAGCCTTCATTTGCCAGGC
CCACTAGGAACATGCCATTGCCGCAGCCCAGGTCCAGCACTCGACTCGCC
TCCTTGTCGATCTTCTCCTCGTTAAGCAGCCAGTCGATCGTTCGCCATTG
GGCACTTTCGTCAAACCAGATCTCGCCCACGTCGCCGTGGCTCTTGTAGT
TTCGTATCTCCCGGTTGTAGCTGGACTCCCAAAATTCCTTGGTGCCAAGT
TCCGATCCGTTCAGCTCGCTATCCCTGTCGACTGATAACT
BS13795.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-PA | 660 | CG9643-RA | 3..660 | 674..17 | 3265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-RB | 878 | CG9643-RB | 86..744 | 674..16 | 3280 | 99.8 | Minus |
| CG9643-RA | 763 | CG9643-RA | 86..744 | 674..16 | 3280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2978545..2979203 | 16..674 | 3280 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:24:18 has no hits.
BS13795.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:19 Download gff for
BS13795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-PA | 1..660 | 17..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:19 Download gff for
BS13795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 86..744 | 16..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:09 Download gff for
BS13795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 86..744 | 16..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:09 Download gff for
BS13795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2978545..2979203 | 16..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:19 Download gff for
BS13795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2978545..2979203 | 16..674 | 99 | | Plus |
BS13795.5prime Sequence
690 bp (638 high quality bases) assembled on 2006-10-13
> BS13795.5prime
GAAGTTATCAGTCGACATGGATAGCGAGCTGAACGGATCGGAACTTGGCA
CCAAGGAATTTTGGGAGTCCAGCTACAACCGGGAGATACGAAACTACAAG
AGCCACGGCGACGTGGGCGAGATCTGGTTTGACGAAAGTGCCCAATGGCG
AACGATCGACTGGCTGCTTAACGAGGAGAAGATCGACAAGGAGGCGAGTC
GAGTGCTGGACCTGGGCTGCGGCAATGGCATGTTCCTAGTGGGCCTGGCA
AATGAAGGCTTCACCGGAGACCTGACCGGCGTGGACTACTCTCCCAAAGC
CGTCGAGCTGGCGCAAAACATTGCGGAGGATAACAAGCTGAGCATCACAT
ACAAGGTGGCGGACTTAACCCAGCCGCAGAACGAGCTGGGCCAATTTGAC
GTGGTGCACGACAAGGGAACCTACGATGCAGTCAGTCTTTGTCCGGATAA
TGCCAAGGAGAAACGTGCTCTCTACCTGGACACGGTGGAGAAGTTGCTGC
GAACTGCTGACAGCCTGTTTGTAATCACGTCGTGCAATTGGACCGAGGAC
GAGCTGGTGGATAGCTTTGCCGAGAAGTTTGTCAAGTACTATACCATTCC
CACGCCGACCTTTAAGTTTGGCGGCAAGGTGGGCAATGTGGTAACCTCAA
TTGTTTTCAAAAGGAAAAAGGAATAAAAGCTTTCTAGACC
BS13795.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-PA | 660 | CG9643-RA | 1..660 | 17..676 | 3275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-RB | 878 | CG9643-RB | 84..744 | 17..677 | 3290 | 99.8 | Plus |
| CG9643-RA | 763 | CG9643-RA | 84..744 | 17..677 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2978545..2979205 | 677..17 | 3290 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:06:29 has no hits.
BS13795.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:19 Download gff for
BS13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:22 Download gff for
BS13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 84..744 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:36 Download gff for
BS13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 84..744 | 17..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:36 Download gff for
BS13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2978545..2979205 | 17..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:22 Download gff for
BS13795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2978545..2979205 | 17..677 | 99 | | Minus |
BS13795.complete Sequence
692 bp assembled on 2006-11-01
GenBank Submission: FJ637532
> BS13795.complete
GAAGTTATCAGTCGACATGGATAGCGAGCTGAACGGATCGGAACTTGGCA
CCAAGGAATTTTGGGAGTCCAGCTACAACCGGGAGATACGAAACTACAAG
AGCCACGGCGACGTGGGCGAGATCTGGTTTGACGAAAGTGCCCAATGGCG
AACGATCGACTGGCTGCTTAACGAGGAGAAGATCGACAAGGAGGCGAGTC
GAGTGCTGGACCTGGGCTGCGGCAATGGCATGTTCCTAGTGGGCCTGGCA
AATGAAGGCTTCACCGGAGACCTGACCGGCGTGGACTACTCTCCCAAAGC
CGTCGAGCTGGCGCAAAACATTGCGGAGGATAACAAGCTGAGCATCACAT
ACAAGGTGGCGGACTTAACCCAGCCGCAGAACGAGCTGGGCCAATTTGAC
GTGGTGCACGACAAGGGAACCTACGATGCAGTCAGTCTTTGTCCGGATAA
TGCCAAGGAGAAACGTGCTCTCTACCTGGACACGGTGGAGAAGTTGCTGC
GAACTGCTGACAGCCTGTTTGTAATCACGTCGTGCAATTGGACCGAGGAC
GAGCTGGTGGATAGCTTTGCCGAGAAGTTTGTCAAGTACTATACCATTCC
CACGCCGACCTTTAAGTTTGGCGGCAAGGTGGGCAATGTGGTAACCTCAA
TTGTTTTCAAAAGGAAAAAGGAATAAAAGCTTTCTAGACCAT
BS13795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-RB | 660 | CG9643-PB | 1..660 | 17..676 | 3285 | 99.8 | Plus |
| CG9643-RA | 660 | CG9643-PA | 1..660 | 17..676 | 3285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-RB | 878 | CG9643-RB | 84..744 | 17..677 | 3290 | 99.8 | Plus |
| CG9643-RA | 763 | CG9643-RA | 84..744 | 17..677 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2978545..2979205 | 677..17 | 3290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:50 has no hits.
BS13795.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:33 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:55 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 206..866 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:58 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 84..725 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:34 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 206..866 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:01 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9643-RA | 84..725 | 17..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:01 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2978564..2979205 | 17..658 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:58 Download gff for
BS13795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2978564..2979205 | 17..658 | 99 | | Minus |
BS13795.pep Sequence
Translation from 16 to 675
> BS13795.pep
MDSELNGSELGTKEFWESSYNREIRNYKSHGDVGEIWFDESAQWRTIDWL
LNEEKIDKEASRVLDLGCGNGMFLVGLANEGFTGDLTGVDYSPKAVELAQ
NIAEDNKLSITYKVADLTQPQNELGQFDVVHDKGTYDAVSLCPDNAKEKR
ALYLDTVEKLLRTADSLFVITSCNWTEDELVDSFAEKFVKYYTIPTPTFK
FGGKVGNVVTSIVFKRKKE*
BS13795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9643-PB | 219 | CG9643-PB | 1..219 | 1..219 | 1154 | 100 | Plus |
| CG9643-PA | 219 | CG9643-PA | 1..219 | 1..219 | 1154 | 100 | Plus |
