Clone Sequence Records
BS13806.complete Sequence
1928 bp assembled on 2009-12-07
GenBank Submission: KX801449
> BS13806.complete
GAAGTTATCAGTCGACATGGCAGCCAAGCGGAATGCGGTGACCACGGAAG
CTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCCCTCGACTCC
CGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCGACATGAGGC
GCTTAAGTGGTTCGGATGGGGATATAACGACTCGCAGTTTTATGGTAAGG
ATGGTATCATCTGTTTTCGCGGTGAAAAATATCCCCTCGGTGGATGCGAG
CTGCCCAGTTTCACCAAGTGGGTGGAGAAGAAGTTCGATCTGCGAGTGGA
TACCACCAAGCAGTATCCCCAGTTGCCACGAACGTATCCGCGGCCAGTGG
AGAACGCACCCTTCCTGCACGAACTGAAGGGCACCACCCAGGTGGATTAC
TCTGCGGAGGGAATCGATCGGTTGGTGCGGTGCCATGGCCAGACCCTCAA
CGATATATACAGCCTGTGGCACCACAAGTTTCGACGGATACCCGATTTGG
TGGTGTGGCCACGTTGCCACGATGAGGTAGTCCAGTTGGTGCGGCTGGCC
AACAAGCACAATGTGATGCTGGTGCCTTTTGGTGGTGGAACGAGTGTATC
GGGAGCCATCACCTGTCCGCAGAACGAGAGCCGAATGATCTGCGCCCTGG
ACACCTCTCAGATGAATCGACTATTGTGGCTAAACCGGGAGAATCTCACC
GTATGCTTTGAGTCCGGCATTGTGGGTCAGGATCTGGAGAGGGTGTTGCG
AAGTGAAGGTCTGACAGTTGGCCACGAACCGGATTCGTATGAGTTCAGCA
CCCTGGGCGGCTGGGTGGCAACTCGTGCATCTGGCATGAAGAAGAACGTC
TATGGTAACATAGAGGATCTGGTGGTGCGAGTTAGGATGGTCACTCCGTC
GGGAACGCTGGAACGTGAATGCAGTGCGCCGCGCGTGAGTTGTGGACCTG
ATTTCAACCATGTCATCTTGGGATCCGAGGGCACTCTGGGAGTAATCACC
GAAGTGGTGCTCAAGGTGCGTCCCCTGCCATCGTTGAGGCGTTACGGATC
CCTGGCCTTTCCCAACTTCGAGCAGGGAGTGCTCTTCATGCGCGAAGTGG
CGCGGAGGAGATGTCAACCCGCCTCCGTCCGGCTGATGGACAACGAGCAG
TTCATGTTCGGCCAGGCCCTGAAACCGGAGAAGTCCTGGTGGGCCAGTGT
GGTGGATGCCATGAAGCAGCGCTACGTTACCTCCTGGAAGGGCATCGATC
TCAATCAGATCTGCGCGGCCACCTTGCTTTTCGAGGGCGATTTAAAGGAT
GTCCAGCGGCAGGAGGCACTCATTTACGAGATTGCCGAAAAGTTTCAGGG
ATTTCCGGCAGGTGGACAAAATGGGGAACGGGGCTATATACTCACCTTTG
TGATTGCCTACATTAGGGACTTTGGACTACATCAGGGAATTGTGGCGGAG
TCCTTTGAGACATCGGTGCCTTGGGATCGCTGCAGTCTGCTCTGTCGTTC
TGTGAAGCAGCGTGTTGTTTCGGAGTGCAGCAAACGTAGTATTAACTACT
ATACCATTTCGTGTAGAGTAACCCAAACCTACGATGCCGGTGCCTGCATC
TACTTCTACTTTGGATTCCGCAGTACGGACGTGGCCGATCCCGTCGAGCT
TTTCGAGGCCATCGAGCACAGTGCCCGCGATGAGATACTGTCCTGCGGCG
GATCACTGTCCCATCACCATGGCGTGGGAAAGATACGAAGCCATTGGTAC
CGCAATGCCGTCACGGAAACGGGCAGTTCACTATATTCGGCGGCCAAGCG
GCATCTCGATCCGAAGAATATCTTTGCTCTCGGTAACCTTCTGCCCCTGG
AGGAGGCTCAGGCTTCTCCGCCACCACCCACATCATCGACACCACCAAAG
GCCAAATTGTAGAAGCTTTCTAGACCAT
BS13806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-RC | 1896 | CG10253-PC | 1..1896 | 17..1912 | 9480 | 100 | Plus |
| CG10253-RB | 1896 | CG10253-PB | 1..1896 | 17..1912 | 9480 | 100 | Plus |
| CG10253-RD | 1896 | CG10253-PD | 1..1896 | 17..1912 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-RC | 2458 | CG10253-RC | 408..2304 | 17..1913 | 9485 | 100 | Plus |
| CG10253-RB | 2644 | CG10253-RB | 214..2110 | 17..1913 | 9485 | 100 | Plus |
| CG10253-RD | 2136 | CG10253-RD | 86..1982 | 17..1913 | 9485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14931151..14932340 | 1418..229 | 5950 | 100 | Minus |
| 2R | 25286936 | 2R | 14930237..14930628 | 1913..1522 | 1960 | 100 | Minus |
| 2R | 25286936 | 2R | 14932855..14932979 | 141..17 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 14930682..14930796 | 1527..1413 | 545 | 98.3 | Minus |
| 2R | 25286936 | 2R | 14932402..14932489 | 228..141 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:53:48 has no hits.
BS13806.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:52 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RA | 322..2217 | 17..1912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:49 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 86..1981 | 17..1912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:42 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RA | 322..2217 | 17..1912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:26 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 86..1981 | 17..1912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:26 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14930687..14930791 | 1418..1522 | 100 | <- | Minus |
| 2R | 14930238..14930627 | 1523..1912 | 100 | <- | Minus |
| 2R | 14931152..14932340 | 229..1417 | 100 | <- | Minus |
| 2R | 14932402..14932488 | 142..228 | 100 | <- | Minus |
| 2R | 14932855..14932979 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:49 Download gff for
BS13806.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10817743..10818132 | 1523..1912 | 100 | <- | Minus |
| arm_2R | 10818192..10818296 | 1418..1522 | 100 | <- | Minus |
| arm_2R | 10818657..10819845 | 229..1417 | 100 | <- | Minus |
| arm_2R | 10819907..10819993 | 142..228 | 100 | <- | Minus |
| arm_2R | 10820360..10820484 | 17..141 | 100 | | Minus |
BS13806.3prime Sequence
582 bp (516 high quality bases) assembled on 2006-10-13
> BS13806.3prime
ATGGTCTAGAAAGCTTCTACAATTTGGCCTTTGGTGGTGTCGATGATGTG
GGTGGTGGCGGAGAAGCCTGAGCCTCCTCCAGGGGCAGAAGGTTACCGAG
AGCAAAGATATTCTTCGGATCGAGATGCCGCTTGGCCGCCGAATATAGTG
AACTGCCCGTTTCCGTGACGGCATTGCGGTACCAATGGCTTCGTATCTTT
CCCACGCCATGGTGATGGGACAGTGATCCGCCGCAGGACAGTATCTCATC
GCGGGCACTGTGCTCGATGGCCTCGAAAAGCTCGACGGGATCGGCCACGT
CCGTACTGCGGAATCCAAAGTAGAAGTAGATGCAGGCACCGGCATCGTAG
GTTTGGGTTACTCTACACGAAATGGTATAGTAGTTAATACTACGTTTGCT
GCACTCCGAAACAACACGCTGCTTCACAGAACGACAGAGCAGACTGCAGC
GATCCCAAGGCACCGATGTCTCAAAGGACTCCGCCACAATTCCCTGATGT
AGTCCAAAGTCCCTAATGGAGGCAATCACAAAGGTGAGTATATAGCCCCG
TTCCCCCTTTTGTCCCCCTGCCGGAAATCCCC
BS13806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-PA | 1896 | CG10253-RA | 1332..1896 | 581..17 | 2750 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-RC | 2458 | CG10253-RC | 1739..2304 | 581..16 | 2785 | 99.5 | Minus |
| CG10253-RB | 2644 | CG10253-RB | 1545..2110 | 581..16 | 2785 | 99.5 | Minus |
| CG10253-RD | 2136 | CG10253-RD | 1417..1982 | 581..16 | 2785 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14930237..14930628 | 16..407 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 14930682..14930796 | 402..516 | 545 | 98.3 | Plus |
| 2R | 25286936 | 2R | 14931151..14931221 | 511..581 | 310 | 95.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:03:57 has no hits.
BS13806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:22 Download gff for
BS13806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-PA | 1331..1896 | 17..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:35:57 Download gff for
BS13806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 1416..1982 | 16..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:28 Download gff for
BS13806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 1416..1982 | 16..582 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:28 Download gff for
BS13806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14930237..14930627 | 16..406 | 100 | <- | Plus |
| 2R | 14930687..14930791 | 407..511 | 100 | <- | Plus |
| 2R | 14931152..14931221 | 512..582 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:35:57 Download gff for
BS13806.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10817742..10818132 | 16..406 | 100 | <- | Plus |
| arm_2R | 10818192..10818296 | 407..511 | 100 | <- | Plus |
| arm_2R | 10818657..10818726 | 512..582 | 94 | | Plus |
BS13806.5prime Sequence
603 bp (546 high quality bases) assembled on 2006-10-13
> BS13806.5prime
GAAGTTATCAGTCGACATGGCAGCCAAGCGGAATGCGGTGACCACGGAAG
CTCCGGAATCGTCGGCGCCCGGCGAAGGTACCGCCCTCGCCCTCGACTCC
CGCCTGTCCAAGCGCGTGGAGAGCGTCATCCCCAAGAAGCGACATGAGGC
GCTTAAGTGGTTCGGATGGGGATATAACGACTCGCAGTTTTATGGTAAGG
ATGGTATCATCTGTTTTCGCGGTGAAAAATATCCCCTCGGTGGATGCGAG
CTGCCCAGTTTCACCAAGTGGGTGGAGAAGAAGTTCGATCTGCGAGTGGA
TACCACCAAGCAGTATCCCCAGTTGCCACGAACGTATCCGCGGCCAGTGG
AGAACGCACCCTTCCTGCACGAACTGAAGGGCACCACCCAGGTGGATTAC
TCTGCGGAGGGAATCGATCGGTTGGTGCGGTGCCATGGCCAGACCCTCAA
CGATATATACAGCCTGTGGCACCACAAGTTTCGACGGATACCCGATTTGG
TGGTGTGGCCACGTTGCCACGATGAGGTAGTCCAGTTGGTGCGGCTGGGC
AACAAGCACAATGTGATGCTGGTGCCTTTTGGTGGTGGAACGAGTGTATC
GGG
BS13806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-PA | 1896 | CG10253-RA | 1..587 | 17..603 | 2910 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-RC | 2458 | CG10253-RC | 408..994 | 17..603 | 2920 | 99.8 | Plus |
| CG10253-RB | 2644 | CG10253-RB | 214..800 | 17..603 | 2920 | 99.8 | Plus |
| CG10253-RD | 2136 | CG10253-RD | 86..672 | 17..603 | 2920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14931966..14932340 | 603..229 | 1860 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14932855..14932979 | 141..17 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 14932402..14932489 | 228..141 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:20:21 has no hits.
BS13806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:22 Download gff for
BS13806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-PA | 1..587 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:51 Download gff for
BS13806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 86..672 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:00 Download gff for
BS13806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10253-RD | 86..672 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:00 Download gff for
BS13806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14931966..14932340 | 229..603 | 99 | <- | Minus |
| 2R | 14932402..14932488 | 142..228 | 100 | <- | Minus |
| 2R | 14932855..14932979 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:51 Download gff for
BS13806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10819471..10819845 | 229..603 | 99 | <- | Minus |
| arm_2R | 10819907..10819993 | 142..228 | 100 | <- | Minus |
| arm_2R | 10820360..10820484 | 17..141 | 100 | | Minus |
BS13806.pep Sequence
Translation from 16 to 1911
> BS13806.pep
MAAKRNAVTTEAPESSAPGEGTALALDSRLSKRVESVIPKKRHEALKWFG
WGYNDSQFYGKDGIICFRGEKYPLGGCELPSFTKWVEKKFDLRVDTTKQY
PQLPRTYPRPVENAPFLHELKGTTQVDYSAEGIDRLVRCHGQTLNDIYSL
WHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNVMLVPFGGGTSVSGAITC
PQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQDLERVLRSEGLT
VGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTLER
ECSAPRVSCGPDFNHVILGSEGTLGVITEVVLKVRPLPSLRRYGSLAFPN
FEQGVLFMREVARRRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMK
QRYVTSWKGIDLNQICAATLLFEGDLKDVQRQEALIYEIAEKFQGFPAGG
QNGERGYILTFVIAYIRDFGLHQGIVAESFETSVPWDRCSLLCRSVKQRV
VSECSKRSINYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEAIE
HSARDEILSCGGSLSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPK
NIFALGNLLPLEEAQASPPPPTSSTPPKAKL*
BS13806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10253-PC | 631 | CG10253-PC | 1..631 | 1..631 | 3355 | 100 | Plus |
| CG10253-PB | 631 | CG10253-PB | 1..631 | 1..631 | 3355 | 100 | Plus |
| CG10253-PD | 631 | CG10253-PD | 1..631 | 1..631 | 3355 | 100 | Plus |
| CG10253-PA | 631 | CG10253-PA | 1..631 | 1..631 | 3355 | 100 | Plus |
| CG3835-PA | 533 | CG3835-PA | 116..282 | 161..330 | 173 | 28.7 | Plus |
