Clone Sequence Records
BS13808.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS13808.5prime
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGTGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GTGAAAGCTTTCTAGACC
BS13808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5454-PA | 438 | CG5454-RA | 1..438 | 17..454 | 2140 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-C-RA | 687 | CG5454-RA | 111..549 | 17..455 | 2165 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18983102..18983540 | 455..17 | 2165 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:47 has no hits.
BS13808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:24 Download gff for
BS13808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5454-PA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:06 Download gff for
BS13808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-C-RA | 100..556 | 7..465 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:27 Download gff for
BS13808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-C-RA | 102..558 | 7..465 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:27 Download gff for
BS13808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18983093..18983549 | 7..465 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:06 Download gff for
BS13808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14808815..14809271 | 7..465 | 97 | | Minus |
BS13808.complete Sequence
470 bp assembled on 2006-11-01
GenBank Submission: FJ637533
> BS13808.complete
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGGGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GTGAAAGCTTTCTAGACCAT
BS13808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-C-RA | 438 | CG5454-PA | 1..438 | 17..454 | 2175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-C-RA | 687 | CG5454-RA | 111..549 | 17..455 | 2180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18983102..18983540 | 455..17 | 2180 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:25 has no hits.
BS13808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:07 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-RA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:48 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-RA | 100..556 | 7..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:35 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-C-RA | 109..545 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:09 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-RA | 100..556 | 7..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:25 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-C-RA | 111..547 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:25 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18983104..18983540 | 17..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:35 Download gff for
BS13808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14808826..14809262 | 17..453 | 99 | | Minus |
BS13808.pep Sequence
Translation from 16 to 453
> BS13808.pep
MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLI
DATTAAFKAGKITNNPFAGGPGGAPPKPAGVSIPPPNMGAPPRPGMPGMP
YMPPLMNPMMGMRPPPIMNPMAMMGPPPPLGTIPGVRPGIMNGPK*
BS13808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-C-PA | 145 | CG5454-PA | 1..145 | 1..145 | 831 | 100 | Plus |
