Clone BS13809 Report

Search the DGRC for BS13809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG17378-RA
Protein status:BS13809.pep: full length peptide match
Sequenced Size:1865

Clone Sequence Records

BS13809.5prime Sequence

549 bp (480 high quality bases) assembled on 2006-10-13

> BS13809.5prime
GAAGTTATCAGTCGACATGGTGGATGCCAAGCCGCAGCCACCCACTCCGG
GCGCAATGCCTGGAACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGA
TCGAAGATCAAACTGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAA
GTCCAAGTTCCTCACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAA
TATCGAACAAGCTGACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGC
GATGACGATGAAGATATACCCAAGTTTGACGAGAGCATTGATTATACCAA
GATCGACTTCGAAGGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGA
TCATCTCAGGACGATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTG
GAACCATCACGTGGGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCG
CTCCAGCTCCGGCTCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCT
CTGTATCCCTGCCCGAACCTATGGCCAATCCTTTTCATGACGTGAGCAA

BS13809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-PA 1833 CG17378-RA 1..532 17..548 2560 99.2 Plus
CG17378-PB 1686 CG17378-RB 47..385 210..548 1595 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-RA 3135 CG17378-RA 652..1184 16..548 2605 99.2 Plus
CG17378-RC 1935 CG17378-RC 118..456 210..548 1635 98.8 Plus
CG17378-RB 2238 CG17378-RB 118..456 210..548 1635 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6774692..6774887 16..211 980 100 Plus
2L 23513712 2L 6776139..6776297 390..548 735 97.5 Plus
2L 23513712 2L 6775965..6776079 276..390 575 100 Plus
2L 23513712 2L 6775829..6775898 210..279 335 98.6 Plus
Blast to na_te.dros performed on 2015-02-13 01:07:07 has no hits.

BS13809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:24 Download gff for BS13809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17378-PA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:06 Download gff for BS13809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 646..1183 6..547 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:57 Download gff for BS13809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 646..1183 6..547 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:57 Download gff for BS13809.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6776139..6776296 390..547 97   Plus
2L 6774686..6774887 6..211 98 -> Plus
2L 6775831..6775894 212..275 100 -> Plus
2L 6775965..6776078 276..389 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:06 Download gff for BS13809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6775965..6776078 276..389 100 -> Plus
arm_2L 6774686..6774887 6..211 98 -> Plus
arm_2L 6775831..6775894 212..275 100 -> Plus
arm_2L 6776139..6776296 390..547 97   Plus

BS13809.complete Sequence

1865 bp assembled on 2012-04-25

GenBank Submission: KX801984

> BS13809.complete
GAAGTTATCAGTCGACATGGTGGATGCCAAGCCGCAGCCACCCACTCCGG
GCGCAATGCCTGGAACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGA
TCGAAGATCAAACTGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAA
GTCCAAGTTCCTCACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAA
TATCGAACAAGCTGACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGC
GATGACGATGAAGATATACCCAAGTTTGACGAGAGCATTGATTATACCAA
GATCGACTTCGAAGGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGA
TCATCTCAGGACGATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTG
GAACCATCACGTGGGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCG
CTCCAGCTCCGGCTCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCT
CTGTATCCCTGCCCGAGCATATGGCCAATCGTTCTCATGACGTGAGCAGC
ACCACACGCTCGGATTCCATAGAGTCGCGTCACTCCGGCGGATATGAGAG
GGCCAGGGCAATCGCAGGAGCCCGTCGCAGCGAGATGGACATGCAAAAGG
ATGTCCAGAGGATCGGCGAAGTGGGCGACACTGTGCCGCCGCACATAGAT
GTTCAGCCGCCGACGGAGGCGGGAGCGGGATCCGGAGGACGGCAGCAGTG
GGCGGGCGGAAGCAACTCGATGCGCCTTCCGTCGCGCAGTCGCGCCTCGA
ACAGCAGCACTCTGACCAGCCTGCGCGATGAGCCGGATCAGCTATTGGCC
AGCCCCAGCATGGAGTCCACCGACTGGCGGCACTTTATCCGATCGGAGTC
GCAGAACTCGGTGCCCTCATGGGCTTCCTCCATCAGCCTGGATTGCCGAG
CGGGCGAGGAACCGGTCAAGGAGTTTATGAAGCACTTTACCGCTCTGCTA
TTTGGCGGATCTCCGGGAGCCGTTGATCTTGAGCTGAAGTCGGAGTTTGG
CGTATTGCTGCGTCTGGAGATCGGTCGACTGTGGTTCACCCGCTTTCTCA
CCGAGCAGCGCCACAAGTCCAAGCGACTGGACTCGGTCACGTTCGGCAGT
CTGGCCCAATACTTTGCACTGGCCCTGTTTGAGTGCAGCGAGTGCGAGGA
TTATGGCCCGGCTGCGGTACTGATGAACCTCTGTTTCCTTTTCTACCACG
AGGTCGAGGTGCCCGGCTGCGATCCTTATCGCGAGTACCTGTTCTCCTCG
CTGCGCCAGCAACCCATCTGGCAGCAGGCGCGGTTCTGGAACGCAATCTT
CCACGACGGCATGCAGGCGGAACGGGAGCATCGGGGTCAGAGCCAGATGA
GGCGCCAAAAGCGTCGACAGCAGAAGCAGCAGCAACGGCAGGCAGCTGCC
GGAGCAGGATCAGGAGCGGGAACTGCAGATGGCCCGCCTACCAAGTCGCA
GCGCAAACAGGGCGGCGACTCCTCCTCCAGCTCCTCGCATCAGGCGGCAC
AGTCGGGCACTCCGGCGGCTCAAGCCTGCACTGGTTCCATTCCAGCCAAC
CGGAGGCCCAGCAAGACCAGTCTCACCCAGGCGCATTCGCTTCGGGACCA
GGAGGACATTGCATTTCGGCAGCTTGGGGCATTGACGTGCAATATGCACT
CACTGGGGACATCCCAGGAATTGTGCCTTGACTTTCTGAAAAAGAACGTG
GTGGCCCATAACCTATCCAAGGATAAAGCCAAACTAATCAGAGACAATAT
ATATCGAATGTACCATGAGACGCAACTTTGGGGAGCTCGACACGCCTGAA
AGCTTTCTAGACCAT

BS13809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-RA 1833 CG17378-PA 1..1833 17..1849 9165 100 Plus
CG17378-RC 1686 CG17378-PC 47..1686 210..1849 8200 100 Plus
CG17378-RB 1686 CG17378-PB 47..1686 210..1849 8200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-RA 3135 CG17378-RA 652..2485 16..1849 9170 100 Plus
CG17378-RC 1935 CG17378-RC 118..1757 210..1849 8200 100 Plus
CG17378-RB 2238 CG17378-RB 118..1757 210..1849 8200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6776139..6777427 390..1678 6445 100 Plus
2L 23513712 2L 6774692..6774887 16..211 980 100 Plus
2L 23513712 2L 6775965..6776079 276..390 575 100 Plus
2L 23513712 2L 6777499..6777599 1677..1777 490 99 Plus
2L 23513712 2L 6777656..6777733 1772..1849 390 100 Plus
2L 23513712 2L 6775829..6775898 210..279 335 98.6 Plus
Blast to na_te.dros performed 2014-11-28 12:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6850 1363..1478 163 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1064..1146 1394..1477 138 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2411 1406..1478 136 66.7 Plus

BS13809.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:15 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 648..2489 6..1853 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:43 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 655..2486 17..1848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:44 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 653..2484 17..1848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:01 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 655..2486 17..1848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:37 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
CG17378-RA 653..2484 17..1848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:37 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6775965..6776078 276..389 100 -> Plus
2L 6774693..6774887 17..211 100 -> Plus
2L 6775831..6775894 212..275 100 -> Plus
2L 6776139..6777426 390..1677 100 -> Plus
2L 6777500..6777594 1678..1772 100 -> Plus
2L 6777657..6777732 1773..1848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:44 Download gff for BS13809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6774693..6774887 17..211 100 -> Plus
arm_2L 6775831..6775894 212..275 100 -> Plus
arm_2L 6775965..6776078 276..389 100 -> Plus
arm_2L 6776139..6777426 390..1677 100 -> Plus
arm_2L 6777500..6777594 1678..1772 100 -> Plus
arm_2L 6777657..6777732 1773..1848 100   Plus

BS13809.pep Sequence

Translation from 16 to 1848

> BS13809.pep
MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT
VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG
RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS
SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA
GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN
SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP
SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL
EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA
VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ
AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG
DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF
RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH
ETQLWGARHA*

BS13809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17378-PA 610 CG17378-PA 1..610 1..610 3171 100 Plus
CG17378-PC 561 CG17378-PC 16..561 65..610 2834 99.8 Plus
CG17378-PB 561 CG17378-PB 16..561 65..610 2834 99.8 Plus