Clone Sequence Records
BS13809.5prime Sequence
549 bp (480 high quality bases) assembled on 2006-10-13
> BS13809.5prime
GAAGTTATCAGTCGACATGGTGGATGCCAAGCCGCAGCCACCCACTCCGG
GCGCAATGCCTGGAACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGA
TCGAAGATCAAACTGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAA
GTCCAAGTTCCTCACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAA
TATCGAACAAGCTGACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGC
GATGACGATGAAGATATACCCAAGTTTGACGAGAGCATTGATTATACCAA
GATCGACTTCGAAGGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGA
TCATCTCAGGACGATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTG
GAACCATCACGTGGGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCG
CTCCAGCTCCGGCTCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCT
CTGTATCCCTGCCCGAACCTATGGCCAATCCTTTTCATGACGTGAGCAA
BS13809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17378-PA | 1833 | CG17378-RA | 1..532 | 17..548 | 2560 | 99.2 | Plus |
CG17378-PB | 1686 | CG17378-RB | 47..385 | 210..548 | 1595 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17378-RA | 3135 | CG17378-RA | 652..1184 | 16..548 | 2605 | 99.2 | Plus |
CG17378-RC | 1935 | CG17378-RC | 118..456 | 210..548 | 1635 | 98.8 | Plus |
CG17378-RB | 2238 | CG17378-RB | 118..456 | 210..548 | 1635 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6774692..6774887 | 16..211 | 980 | 100 | Plus |
2L | 23513712 | 2L | 6776139..6776297 | 390..548 | 735 | 97.5 | Plus |
2L | 23513712 | 2L | 6775965..6776079 | 276..390 | 575 | 100 | Plus |
2L | 23513712 | 2L | 6775829..6775898 | 210..279 | 335 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:07:07 has no hits.
BS13809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:24 Download gff for
BS13809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:47:06 Download gff for
BS13809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 646..1183 | 6..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:57 Download gff for
BS13809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 646..1183 | 6..547 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:57 Download gff for
BS13809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6776139..6776296 | 390..547 | 97 | | Plus |
2L | 6774686..6774887 | 6..211 | 98 | -> | Plus |
2L | 6775831..6775894 | 212..275 | 100 | -> | Plus |
2L | 6775965..6776078 | 276..389 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:47:06 Download gff for
BS13809.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6775965..6776078 | 276..389 | 100 | -> | Plus |
arm_2L | 6774686..6774887 | 6..211 | 98 | -> | Plus |
arm_2L | 6775831..6775894 | 212..275 | 100 | -> | Plus |
arm_2L | 6776139..6776296 | 390..547 | 97 | | Plus |
BS13809.complete Sequence
1865 bp assembled on 2012-04-25
GenBank Submission: KX801984
> BS13809.complete
GAAGTTATCAGTCGACATGGTGGATGCCAAGCCGCAGCCACCCACTCCGG
GCGCAATGCCTGGAACGGGAACACCGCCGGGCGGATTCGCCGGCGAGCGA
TCGAAGATCAAACTGTTCATGGAACGGACGCCCAGCATTGGAGCCCTCAA
GTCCAAGTTCCTCACCGTGCTGGGCAACAGCAACGAGCTGCTCAACGGAA
TATCGAACAAGCTGACCCTGAGCAGCAGTTCCAGCGACTCTGATTACTGC
GATGACGATGAAGATATACCCAAGTTTGACGAGAGCATTGATTATACCAA
GATCGACTTCGAAGGACGACGTGTGAAGGCGCGACGAGCTCACGAGGAGA
TCATCTCAGGACGATATCGTCAGCCCAATTTGGCACCGAGGCCACGTCTG
GAACCATCACGTGGGCGTCATGCGGCCAGCAAACTGGGTGCACCCCTTCG
CTCCAGCTCCGGCTCCTCGAGCAGCTCCAGCAGCAGCGACGACAGCAGCT
CTGTATCCCTGCCCGAGCATATGGCCAATCGTTCTCATGACGTGAGCAGC
ACCACACGCTCGGATTCCATAGAGTCGCGTCACTCCGGCGGATATGAGAG
GGCCAGGGCAATCGCAGGAGCCCGTCGCAGCGAGATGGACATGCAAAAGG
ATGTCCAGAGGATCGGCGAAGTGGGCGACACTGTGCCGCCGCACATAGAT
GTTCAGCCGCCGACGGAGGCGGGAGCGGGATCCGGAGGACGGCAGCAGTG
GGCGGGCGGAAGCAACTCGATGCGCCTTCCGTCGCGCAGTCGCGCCTCGA
ACAGCAGCACTCTGACCAGCCTGCGCGATGAGCCGGATCAGCTATTGGCC
AGCCCCAGCATGGAGTCCACCGACTGGCGGCACTTTATCCGATCGGAGTC
GCAGAACTCGGTGCCCTCATGGGCTTCCTCCATCAGCCTGGATTGCCGAG
CGGGCGAGGAACCGGTCAAGGAGTTTATGAAGCACTTTACCGCTCTGCTA
TTTGGCGGATCTCCGGGAGCCGTTGATCTTGAGCTGAAGTCGGAGTTTGG
CGTATTGCTGCGTCTGGAGATCGGTCGACTGTGGTTCACCCGCTTTCTCA
CCGAGCAGCGCCACAAGTCCAAGCGACTGGACTCGGTCACGTTCGGCAGT
CTGGCCCAATACTTTGCACTGGCCCTGTTTGAGTGCAGCGAGTGCGAGGA
TTATGGCCCGGCTGCGGTACTGATGAACCTCTGTTTCCTTTTCTACCACG
AGGTCGAGGTGCCCGGCTGCGATCCTTATCGCGAGTACCTGTTCTCCTCG
CTGCGCCAGCAACCCATCTGGCAGCAGGCGCGGTTCTGGAACGCAATCTT
CCACGACGGCATGCAGGCGGAACGGGAGCATCGGGGTCAGAGCCAGATGA
GGCGCCAAAAGCGTCGACAGCAGAAGCAGCAGCAACGGCAGGCAGCTGCC
GGAGCAGGATCAGGAGCGGGAACTGCAGATGGCCCGCCTACCAAGTCGCA
GCGCAAACAGGGCGGCGACTCCTCCTCCAGCTCCTCGCATCAGGCGGCAC
AGTCGGGCACTCCGGCGGCTCAAGCCTGCACTGGTTCCATTCCAGCCAAC
CGGAGGCCCAGCAAGACCAGTCTCACCCAGGCGCATTCGCTTCGGGACCA
GGAGGACATTGCATTTCGGCAGCTTGGGGCATTGACGTGCAATATGCACT
CACTGGGGACATCCCAGGAATTGTGCCTTGACTTTCTGAAAAAGAACGTG
GTGGCCCATAACCTATCCAAGGATAAAGCCAAACTAATCAGAGACAATAT
ATATCGAATGTACCATGAGACGCAACTTTGGGGAGCTCGACACGCCTGAA
AGCTTTCTAGACCAT
BS13809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17378-RA | 1833 | CG17378-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
CG17378-RC | 1686 | CG17378-PC | 47..1686 | 210..1849 | 8200 | 100 | Plus |
CG17378-RB | 1686 | CG17378-PB | 47..1686 | 210..1849 | 8200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17378-RA | 3135 | CG17378-RA | 652..2485 | 16..1849 | 9170 | 100 | Plus |
CG17378-RC | 1935 | CG17378-RC | 118..1757 | 210..1849 | 8200 | 100 | Plus |
CG17378-RB | 2238 | CG17378-RB | 118..1757 | 210..1849 | 8200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6776139..6777427 | 390..1678 | 6445 | 100 | Plus |
2L | 23513712 | 2L | 6774692..6774887 | 16..211 | 980 | 100 | Plus |
2L | 23513712 | 2L | 6775965..6776079 | 276..390 | 575 | 100 | Plus |
2L | 23513712 | 2L | 6777499..6777599 | 1677..1777 | 490 | 99 | Plus |
2L | 23513712 | 2L | 6777656..6777733 | 1772..1849 | 390 | 100 | Plus |
2L | 23513712 | 2L | 6775829..6775898 | 210..279 | 335 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 12:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6850 | 1363..1478 | 163 | 61.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1146 | 1394..1477 | 138 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2411 | 1406..1478 | 136 | 66.7 | Plus |
BS13809.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:15 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 648..2489 | 6..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:43 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 655..2486 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:44 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 653..2484 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:01 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 655..2486 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:37 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17378-RA | 653..2484 | 17..1848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:37 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6775965..6776078 | 276..389 | 100 | -> | Plus |
2L | 6774693..6774887 | 17..211 | 100 | -> | Plus |
2L | 6775831..6775894 | 212..275 | 100 | -> | Plus |
2L | 6776139..6777426 | 390..1677 | 100 | -> | Plus |
2L | 6777500..6777594 | 1678..1772 | 100 | -> | Plus |
2L | 6777657..6777732 | 1773..1848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:44 Download gff for
BS13809.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6774693..6774887 | 17..211 | 100 | -> | Plus |
arm_2L | 6775831..6775894 | 212..275 | 100 | -> | Plus |
arm_2L | 6775965..6776078 | 276..389 | 100 | -> | Plus |
arm_2L | 6776139..6777426 | 390..1677 | 100 | -> | Plus |
arm_2L | 6777500..6777594 | 1678..1772 | 100 | -> | Plus |
arm_2L | 6777657..6777732 | 1773..1848 | 100 | | Plus |
BS13809.pep Sequence
Translation from 16 to 1848
> BS13809.pep
MVDAKPQPPTPGAMPGTGTPPGGFAGERSKIKLFMERTPSIGALKSKFLT
VLGNSNELLNGISNKLTLSSSSSDSDYCDDDEDIPKFDESIDYTKIDFEG
RRVKARRAHEEIISGRYRQPNLAPRPRLEPSRGRHAASKLGAPLRSSSGS
SSSSSSSDDSSSVSLPEHMANRSHDVSSTTRSDSIESRHSGGYERARAIA
GARRSEMDMQKDVQRIGEVGDTVPPHIDVQPPTEAGAGSGGRQQWAGGSN
SMRLPSRSRASNSSTLTSLRDEPDQLLASPSMESTDWRHFIRSESQNSVP
SWASSISLDCRAGEEPVKEFMKHFTALLFGGSPGAVDLELKSEFGVLLRL
EIGRLWFTRFLTEQRHKSKRLDSVTFGSLAQYFALALFECSECEDYGPAA
VLMNLCFLFYHEVEVPGCDPYREYLFSSLRQQPIWQQARFWNAIFHDGMQ
AEREHRGQSQMRRQKRRQQKQQQRQAAAGAGSGAGTADGPPTKSQRKQGG
DSSSSSSHQAAQSGTPAAQACTGSIPANRRPSKTSLTQAHSLRDQEDIAF
RQLGALTCNMHSLGTSQELCLDFLKKNVVAHNLSKDKAKLIRDNIYRMYH
ETQLWGARHA*
BS13809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17378-PA | 610 | CG17378-PA | 1..610 | 1..610 | 3171 | 100 | Plus |
CG17378-PC | 561 | CG17378-PC | 16..561 | 65..610 | 2834 | 99.8 | Plus |
CG17378-PB | 561 | CG17378-PB | 16..561 | 65..610 | 2834 | 99.8 | Plus |