Clone BS13813 Report

Search the DGRC for BS13813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG14414-RA
Protein status:BS13813.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13813.3prime Sequence

477 bp (476 high quality bases) assembled on 2006-10-13

> BS13813.3prime
ATGGTCTAGAAAGCTTCTAGTGGCGCTTGGGACGCTGCTGGTGATGATAT
GGAGCCGATGACTTTCCGTAGCGCTGCGAACCGTCGCGATCCTTGTTAAA
CTGATAGCGCTGGATGAAGGGCACGTTGGCCTCGCCCCTGCCCGCTGTAT
TCAGCTCGAGATTGTCGTCTGTCTGGCGCTCCAACATTTTCAGCTTGGCC
TCAATGGCCCGAATGGCCTCCGTTTTGCTGACCTTCTCCTCGCGTTTACC
TGTGCCCAAGGCCGGTATATCCAGGCGCGGCTTTGGCTTCTGCGTTTCAT
CATATTTAATGTTCTTGGCCAAACGCACGGCTATCGAGCGATTTCCCACG
CTGGTTCCGTCCAGTTTCAGTAGCGCATTGGTGGCTCCCTCGTTCTGCGC
AAAGGTGACGAAGGCGTAGCCCCTGGATTGTCCCACCATGGGACCGCCCT
TGTGGAACAGCATGTCGACTGATAACT

BS13813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PB 618 CG14414-RB 167..618 468..17 2260 100 Minus
CG14414-PC 447 CG14414-RC 1..447 463..17 2235 100 Minus
CG14414-PA 447 CG14414-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..708 468..17 2260 100 Minus
CG14414-RD 825 CG14414-RD 233..684 468..17 2260 100 Minus
CG14414-RA 779 CG14414-RA 187..638 468..17 2260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582033 305..17 1430 99.7 Minus
X 23542271 X 14581579..14581675 397..301 485 100 Minus
X 23542271 X 14580966..14581039 468..395 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:01:55 has no hits.

BS13813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:27 Download gff for BS13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 17..468 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:30 Download gff for BS13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..468 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:19 Download gff for BS13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..468 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:19 Download gff for BS13813.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14580966..14581039 395..468 100 -> Minus
X 14581582..14581674 302..394 100 -> Minus
X 14581749..14582036 12..301 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:30 Download gff for BS13813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14474999..14475072 395..468 100 -> Minus
arm_X 14475615..14475707 302..394 100 -> Minus
arm_X 14475782..14476069 12..301 99   Minus

BS13813.5prime Sequence

477 bp (477 high quality bases) assembled on 2006-10-13

> BS13813.5prime
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACTAGAAGCTTTCTAGACC

BS13813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PB 618 CG14414-RB 167..618 12..463 2260 100 Plus
CG14414-PC 447 CG14414-RC 1..447 17..463 2235 100 Plus
CG14414-PA 447 CG14414-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..708 12..463 2260 100 Plus
CG14414-RD 825 CG14414-RD 233..684 12..463 2260 100 Plus
CG14414-RA 779 CG14414-RA 187..638 12..463 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582033 175..463 1430 99.7 Plus
X 23542271 X 14581579..14581675 83..179 485 100 Plus
X 23542271 X 14580966..14581039 12..85 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:02:11 has no hits.

BS13813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:27 Download gff for BS13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 12..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:34 Download gff for BS13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:23 Download gff for BS13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:23 Download gff for BS13813.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14580966..14581039 12..85 100 -> Plus
X 14581582..14581674 86..178 100 -> Plus
X 14581749..14582036 179..468 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:34 Download gff for BS13813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14474999..14475072 12..85 100 -> Plus
arm_X 14475615..14475707 86..178 100 -> Plus
arm_X 14475782..14476069 179..468 99   Plus

BS13813.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ637534

> BS13813.complete
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACTAGAAGCTTTCTAGACCAT

BS13813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 642 CG14414-PE 191..642 12..463 2260 100 Plus
CG14414-RD 618 CG14414-PD 167..618 12..463 2260 100 Plus
CG14414-RA 447 CG14414-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..708 12..463 2260 100 Plus
CG14414-RD 825 CG14414-RD 233..684 12..463 2260 100 Plus
CG14414-RA 779 CG14414-RA 187..638 12..463 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582033 175..463 1430 99.7 Plus
X 23542271 X 14581579..14581675 83..179 485 100 Plus
X 23542271 X 14580966..14581039 12..85 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:53:26 has no hits.

BS13813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:16 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RB 167..618 12..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:56 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RC 241..695 12..468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:33 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 192..638 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:16 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RC 241..695 12..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:39 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 192..638 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:39 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
X 14580971..14581039 17..85 100 -> Plus
X 14581582..14581674 86..178 100 -> Plus
X 14581749..14582033 179..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:33 Download gff for BS13813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14475004..14475072 17..85 100 -> Plus
arm_X 14475615..14475707 86..178 100 -> Plus
arm_X 14475782..14476066 179..463 100   Plus

BS13813.pep Sequence

Translation from 16 to 462

> BS13813.pep
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRH*

BS13813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PA 148 CG14414-PA 1..148 1..148 766 100 Plus
CG14414-PC 148 CG14414-PC 1..148 1..148 766 100 Plus
CG14414-PD 205 CG14414-PD 58..205 1..148 766 100 Plus
CG14414-PE 213 CG14414-PE 66..213 1..148 766 100 Plus