Clone Sequence Records
BS13813.3prime Sequence
477 bp (476 high quality bases) assembled on 2006-10-13
> BS13813.3prime
ATGGTCTAGAAAGCTTCTAGTGGCGCTTGGGACGCTGCTGGTGATGATAT
GGAGCCGATGACTTTCCGTAGCGCTGCGAACCGTCGCGATCCTTGTTAAA
CTGATAGCGCTGGATGAAGGGCACGTTGGCCTCGCCCCTGCCCGCTGTAT
TCAGCTCGAGATTGTCGTCTGTCTGGCGCTCCAACATTTTCAGCTTGGCC
TCAATGGCCCGAATGGCCTCCGTTTTGCTGACCTTCTCCTCGCGTTTACC
TGTGCCCAAGGCCGGTATATCCAGGCGCGGCTTTGGCTTCTGCGTTTCAT
CATATTTAATGTTCTTGGCCAAACGCACGGCTATCGAGCGATTTCCCACG
CTGGTTCCGTCCAGTTTCAGTAGCGCATTGGTGGCTCCCTCGTTCTGCGC
AAAGGTGACGAAGGCGTAGCCCCTGGATTGTCCCACCATGGGACCGCCCT
TGTGGAACAGCATGTCGACTGATAACT
BS13813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PB | 618 | CG14414-RB | 167..618 | 468..17 | 2260 | 100 | Minus |
CG14414-PC | 447 | CG14414-RC | 1..447 | 463..17 | 2235 | 100 | Minus |
CG14414-PA | 447 | CG14414-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..708 | 468..17 | 2260 | 100 | Minus |
CG14414-RD | 825 | CG14414-RD | 233..684 | 468..17 | 2260 | 100 | Minus |
CG14414-RA | 779 | CG14414-RA | 187..638 | 468..17 | 2260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582033 | 305..17 | 1430 | 99.7 | Minus |
X | 23542271 | X | 14581579..14581675 | 397..301 | 485 | 100 | Minus |
X | 23542271 | X | 14580966..14581039 | 468..395 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:55 has no hits.
BS13813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:27 Download gff for
BS13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 17..468 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:30 Download gff for
BS13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:19 Download gff for
BS13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..468 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:19 Download gff for
BS13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580966..14581039 | 395..468 | 100 | -> | Minus |
X | 14581582..14581674 | 302..394 | 100 | -> | Minus |
X | 14581749..14582036 | 12..301 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:30 Download gff for
BS13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14474999..14475072 | 395..468 | 100 | -> | Minus |
arm_X | 14475615..14475707 | 302..394 | 100 | -> | Minus |
arm_X | 14475782..14476069 | 12..301 | 99 | | Minus |
BS13813.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-10-13
> BS13813.5prime
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACTAGAAGCTTTCTAGACC
BS13813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PB | 618 | CG14414-RB | 167..618 | 12..463 | 2260 | 100 | Plus |
CG14414-PC | 447 | CG14414-RC | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14414-PA | 447 | CG14414-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..708 | 12..463 | 2260 | 100 | Plus |
CG14414-RD | 825 | CG14414-RD | 233..684 | 12..463 | 2260 | 100 | Plus |
CG14414-RA | 779 | CG14414-RA | 187..638 | 12..463 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582033 | 175..463 | 1430 | 99.7 | Plus |
X | 23542271 | X | 14581579..14581675 | 83..179 | 485 | 100 | Plus |
X | 23542271 | X | 14580966..14581039 | 12..85 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:11 has no hits.
BS13813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:27 Download gff for
BS13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 12..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:34 Download gff for
BS13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:23 Download gff for
BS13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:23 Download gff for
BS13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580966..14581039 | 12..85 | 100 | -> | Plus |
X | 14581582..14581674 | 86..178 | 100 | -> | Plus |
X | 14581749..14582036 | 179..468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:34 Download gff for
BS13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14474999..14475072 | 12..85 | 100 | -> | Plus |
arm_X | 14475615..14475707 | 86..178 | 100 | -> | Plus |
arm_X | 14475782..14476069 | 179..468 | 99 | | Plus |
BS13813.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ637534
> BS13813.complete
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACTAGAAGCTTTCTAGACCAT
BS13813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 642 | CG14414-PE | 191..642 | 12..463 | 2260 | 100 | Plus |
CG14414-RD | 618 | CG14414-PD | 167..618 | 12..463 | 2260 | 100 | Plus |
CG14414-RA | 447 | CG14414-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..708 | 12..463 | 2260 | 100 | Plus |
CG14414-RD | 825 | CG14414-RD | 233..684 | 12..463 | 2260 | 100 | Plus |
CG14414-RA | 779 | CG14414-RA | 187..638 | 12..463 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582033 | 175..463 | 1430 | 99.7 | Plus |
X | 23542271 | X | 14581579..14581675 | 83..179 | 485 | 100 | Plus |
X | 23542271 | X | 14580966..14581039 | 12..85 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:53:26 has no hits.
BS13813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:16 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RB | 167..618 | 12..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:56 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RC | 241..695 | 12..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:33 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 192..638 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:16 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RC | 241..695 | 12..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:39 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 192..638 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:39 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580971..14581039 | 17..85 | 100 | -> | Plus |
X | 14581582..14581674 | 86..178 | 100 | -> | Plus |
X | 14581749..14582033 | 179..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:33 Download gff for
BS13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14475004..14475072 | 17..85 | 100 | -> | Plus |
arm_X | 14475615..14475707 | 86..178 | 100 | -> | Plus |
arm_X | 14475782..14476066 | 179..463 | 100 | | Plus |
BS13813.pep Sequence
Translation from 16 to 462
> BS13813.pep
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRH*
BS13813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PA | 148 | CG14414-PA | 1..148 | 1..148 | 766 | 100 | Plus |
CG14414-PC | 148 | CG14414-PC | 1..148 | 1..148 | 766 | 100 | Plus |
CG14414-PD | 205 | CG14414-PD | 58..205 | 1..148 | 766 | 100 | Plus |
CG14414-PE | 213 | CG14414-PE | 66..213 | 1..148 | 766 | 100 | Plus |