Clone Sequence Records
BS13815.3prime Sequence
554 bp (460 high quality bases) assembled on 2006-10-13
> BS13815.3prime
ATGGTCTAGAAAGCTTTCACGGCACGTAGCCGTAGTTGTGATAGGGCTGG
GCGTACTGCGCCTGCGCCTGTGCGGGATGTGCCGCCAGGTAGGGCAGCGT
TCCAAAGGTATAGGCCGGCAGAGCGGGCGGCTGACCCGCTCCCGACGTGG
ATCCTCCCGCCTGCGACTTGGTGGAGCTCTTCGGCGAGACCTGCGGCTTG
CGCAGCGTGTTGGCCGAGTAGCCAGTCTTCGGCCACCGCTTGCCGGCAAA
CAAGTCGGCCACATAGGCACTCGTCAGCCAAGCGAACACCACGCCCAATG
CCGCCCCCGCCAGGACGTCGCTCCAGTGGTGGTAATAGTCGATGATCCGA
GTCAGCGATACGTACCAGCCGAACATGACGAAGAGGAACTGCAGCAGATG
CTTCAGCAGCTTGGAGACGCGCGTACTGAGCGCCGCCTGCAGGTAGATGG
CCAGGTAGAGCATAGCATACATGGCCATGCTGGCGTGGCCGCTTGTGAAG
GACTGGTAGAGCTCCTTTGAACTGGTAATCGGTCTTGTTGGCGTTGCTGC
ACGT
BS13815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PA | 1026 | CG11438-RA | 490..1026 | 554..17 | 2575 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1781..2317 | 554..17 | 2620 | 99.3 | Minus |
| CG11438-RA | 1245 | CG11438-RA | 568..1104 | 554..17 | 2620 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22467399..22467935 | 554..17 | 2595 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:20:12 has no hits.
BS13815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:28 Download gff for
BS13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 490..1026 | 17..554 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:20 Download gff for
BS13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 568..1107 | 12..554 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:51 Download gff for
BS13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 568..1107 | 12..554 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:51 Download gff for
BS13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22467399..22467938 | 12..554 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:20 Download gff for
BS13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460499..22461038 | 12..554 | 98 | | Minus |
BS13815.5prime Sequence
434 bp (433 high quality bases) assembled on 2006-10-13
> BS13815.5prime
GAAGTTATCAGTCGACATGTCCAAGTATTCGAAGCTGGCCCGCGGGTTCT
GCGACCTGCTGATCTGGGTGGCCCTCAGCGTGGCCAGTGTGCTGCTCCAC
AAGATGGGGCGTCCCTTCCGGCGCGGCTTCTTCTGTGGCGACGAGACCCT
CAGCTATCCAGCGCGCGACGGCACCATCAGCTCCAAGGTGATCATCGCCA
TCGTCCTCGGAGTGCCCAACGCCGTGATCGTAGTGGTGGAGTTGTTTAGG
CAGCTGCCCGGTGGGCCGCTTATAGAGGCGGGCGGTAAGCGGGATAGCTG
CCGGATAGCCCACCGCCTCGGGGTCCTTTATCGCCAGGTTATCTTCTACC
TGTACGGCCTCGCCATGGTCACGTTCACCACGATGCTGACGAAGCTGTGC
CTCGGGCGTCTGCGACCGCACTTCCTCGCCGTGT
BS13815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PA | 1026 | CG11438-RA | 1..418 | 17..434 | 2065 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1291..1709 | 16..434 | 2080 | 99.8 | Plus |
| CG11438-RA | 1245 | CG11438-RA | 78..496 | 16..434 | 2080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22466909..22467327 | 16..434 | 2080 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:11:02 has no hits.
BS13815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:29 Download gff for
BS13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 1..418 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:37 Download gff for
BS13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..496 | 9..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:29 Download gff for
BS13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..496 | 9..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:29 Download gff for
BS13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22466905..22467327 | 9..434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:37 Download gff for
BS13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460005..22460427 | 9..434 | 99 | | Plus |
BS13815.complete Sequence
1058 bp assembled on 2009-08-24
GenBank Submission: KX803501
> BS13815.complete
GAAGTTATCAGTCGACATGTCCAAGTATTCGAAGCTGGCCCGCGGGTTCT
GCGACCTGCTGATCTGGGTGGCCCTCAGCGTGGCCAGTGTGCTGCTCCAC
AAGATGGGGCGTCCCTTCCGGCGCGGCTTCTTCTGTGGCGACGAGACCCT
CAGCTATCCAGCGCGCGACGGCACCATCAGCTCCAAGGTGATCATCGCCA
TCGTCCTCGGAGTGCCCAACGCCGTGATCGTAGTGGTGGAGTTGTTTAGG
CAGCTGCCCGGTGGGCCGCTTAGAGAGGCGGGCGGTAAGCGGGATAGCTG
CCGGATAGCCCACCGCCTCGGGGTCCTTTATCGCCAGGTTATCTTCTACC
TGTACGGCCTCGCCATGGTCACGTTCACCACGATGCTGACGAAGCTGTGC
CTCGGGCGTCTGCGACCGCACTTCCTCGCCGTGTGCCAGCCCATGCTGCC
GGACGGAAGCAGCTGCCAGGACGCCCAGAACCTGGGACGCTACATAGACA
GTTTTACGTGCAGCAACGCCAACATGACCGACTACCAGTTCAAGGAGCTC
TACCAGTCCTTCCCAAGCGGCCACGCCAGCATGGCCATGTATGCTATGCT
CTACCTGGCCATCTACCTGCAGGCGGCGCTCAGTACGCGCGTCTCCAAGC
TGCTGAAGCATCTGCTGCAGTTCCTCTTCGTCATGTTCGGCTGGTACGTA
TCGCTGACTCGGATCATCGACTATTACCACCACTGGAGCGACGTCCTGGC
GGGGGCGGCATTGGGCGTGGTGTTCGCTTGGCTGACGAGTGCCTATGTGG
CCGACTTGTTTGCCGGCAAGCGGTGGCCGAAGACTGGCTACTCGGCCAAC
ACGCTGCGCAAGCCGCAGGTCTCGCCGAAGAGCTCCACCAAGTCGCAGGC
GGGAGGATCCACGTCGGGAGCGGGTCAGCCGCCCGCTCTGCCGGCCTATA
CCTTTGGAACGCTGCCCTACCTGGCGGCACATCCCGCACAGGCGCAGGCG
CAGTACGCCCAGCCCTATCACAACTACGGCTACGTGCCGTGAAAGCTTTC
TAGACCAT
BS13815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 1026 | CG11438-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| CG11438-RA | 1026 | CG11438-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1291..2317 | 16..1042 | 5135 | 100 | Plus |
| CG11438-RA | 1245 | CG11438-RA | 78..1104 | 16..1042 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22466909..22467935 | 16..1042 | 5135 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:37:40 has no hits.
BS13815.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:48 Download gff for
BS13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 79..1103 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:06 Download gff for
BS13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 79..1103 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:06 Download gff for
BS13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 79..1103 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:06 Download gff for
BS13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22466910..22467934 | 17..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:06 Download gff for
BS13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460010..22461034 | 17..1041 | 100 | | Plus |
BS13815.pep Sequence
Translation from 16 to 1041
> BS13815.pep
MSKYSKLARGFCDLLIWVALSVASVLLHKMGRPFRRGFFCGDETLSYPAR
DGTISSKVIIAIVLGVPNAVIVVVELFRQLPGGPLREAGGKRDSCRIAHR
LGVLYRQVIFYLYGLAMVTFTTMLTKLCLGRLRPHFLAVCQPMLPDGSSC
QDAQNLGRYIDSFTCSNANMTDYQFKELYQSFPSGHASMAMYAMLYLAIY
LQAALSTRVSKLLKHLLQFLFVMFGWYVSLTRIIDYYHHWSDVLAGAALG
VVFAWLTSAYVADLFAGKRWPKTGYSANTLRKPQVSPKSSTKSQAGGSTS
GAGQPPALPAYTFGTLPYLAAHPAQAQAQYAQPYHNYGYVP*
BS13815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PB | 341 | CG11438-PB | 1..341 | 1..341 | 1794 | 100 | Plus |
| CG11438-PA | 341 | CG11438-PA | 1..341 | 1..341 | 1794 | 100 | Plus |
| wun-PA | 300 | CG8804-PA | 8..291 | 7..287 | 577 | 41.5 | Plus |
| wun-PB | 379 | CG8804-PB | 87..370 | 7..287 | 577 | 41.5 | Plus |
| wun-PC | 364 | CG8804-PC | 87..343 | 7..258 | 548 | 42.1 | Plus |
