Clone BS13820 Report

Search the DGRC for BS13820

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptHex-C-RA
Protein status:BS13820.pep: full length peptide match
Sequenced Size:1397

Clone Sequence Records

BS13820.complete Sequence

1397 bp assembled on 2009-12-07

GenBank Submission: KX802974

> BS13820.complete
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCGCGAAGTTGACGAAAAGTCTCTAAACCGATCGGAGCAGCTG
TTCGAAAAGATGACGGCGGGCATGTACTTGGGCAACCTGGTGCGCCTTGT
GCTACTTCGTGCCCTCGAGCGCAAGCTGATCTTTAAACAGAGCAGTCGAC
GTCCAGAATTCGCCAGCGTGCTGCAGAGAAACGAAGAGGTTTTCGAGACG
CGCTACATTTCGGAAATCGAGGACGACTCCTTCCCAGAGTTTGCCAGCAC
AAGGAAGATTGTGAAAAATCTGTTTGGTCTAGAGAAGGCCTCCGTGGAGG
ACTGCCAGACTCTGAGATACATCTGCGAGTGCGTAGCTAAGCGAGCGGCT
ACATTAGTAGCCATCGGAGTCAGTGGGCTGGTGAACAGGACTTCCAACCG
CCGCGTGATAGTCGGCATGGATGGCTCCGTCTACCGATACCATCCAAAGT
TCGATGCCTACATGAGGCAAACACTCCAAAAGCTGGTGAAAGCAGACAAG
GAGTGGGACATCATGCTCTCGGAGGACGGATCCGGACGTGGAGCTGCGCT
GGTGGCCGCGGTGGCCAGTAAAACAAAGTAGAAGCTTTCTAGACCAT

BS13820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1365 CG8094-PA 1..1365 17..1381 6825 100 Plus
Hex-A-RC 1347 CG3001-PC 106..222 134..250 210 78.6 Plus
Hex-A-RB 1347 CG3001-PB 106..222 134..250 210 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 66..1430 17..1381 6825 100 Plus
Hex-A-RC 4139 CG3001-RC 929..1045 134..250 210 78.6 Plus
Hex-A-RB 2512 CG3001-RB 714..830 134..250 210 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218900..15220264 1381..17 6825 100 Minus
X 23542271 X 9586603..9586719 134..250 210 78.6 Plus
Blast to na_te.dros performed 2014-11-28 01:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 8009..8045 1297..1333 113 78.4 Plus

BS13820.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:38 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 149..1513 17..1381 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:30 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 66..1430 17..1381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:56 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 149..1513 17..1381 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:25 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 66..1430 17..1381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:25 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218900..15220264 17..1381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:30 Download gff for BS13820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106405..11107769 17..1381 100   Minus

BS13820.3prime Sequence

560 bp (557 high quality bases) assembled on 2006-10-13

> BS13820.3prime
ATGGTCTAGAAAGCTTCTACTTTGTTTTACTGGCCACCGCGGCCACCAGC
GCAGCTCCACGTCCGGATCCGTCCTCCGAGAGCATGATGTCCCACTCCTT
GTCTGCTTTCACCAGCTTTTGGAGTGTTTGCCTCATGTAGGCATCGAACT
TTGGATGGTATCGGTAGACGGAGCCATCCATGCCGACTATCACGCGGCGG
TTGGAAGTCCTGTTCACCAGCCCACTGACTCCGATGGCTACTAATGTAGC
CGCTCGCTTAGCTACGCACTCGCAGATGTATCTCAGAGTCTGGCAGTCCT
CCACGGAGGCCTTCTCTAGACCAAACAGATTTTTCACAATCTTCCTTGTG
CTGGCAAACTCTGGGAAGGAGTCGTCCTCGATTTCCGAAATGTAGCGCGT
CTCGAAAACCTCTTCGTTTCTCTGCAGCACGCTGGCGAATTCTGGACGTC
GACTGCTCTGTTTAAAGATCAGCTTGCGCTCGAGGGCACGAAGTAGCACA
AGGCGCACCAGGTTGCCCAAGTACATGCCCGCCGTCATCTTTTCGAACAG
CTGCTCCGAT

BS13820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8094-PA 1365 Hex-C-RA 822..1365 560..17 2720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 887..1430 560..17 2720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218900..15219443 17..560 2720 100 Plus
Blast to na_te.dros performed 2015-02-11 19:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 8009..8045 101..65 113 78.4 Minus

BS13820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:32 Download gff for BS13820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8094-PA 822..1365 17..560 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:08:52 Download gff for BS13820.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 887..1440 7..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:47 Download gff for BS13820.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 887..1440 7..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:47 Download gff for BS13820.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15218890..15219443 7..560 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:08:52 Download gff for BS13820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106395..11106948 7..560 99   Plus

BS13820.5prime Sequence

618 bp (555 high quality bases) assembled on 2006-10-13

> BS13820.5prime
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCA

BS13820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8094-PA 1365 Hex-C-RA 1..602 17..618 3010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 66..667 17..618 3010 100 Plus
Hex-A-RC 4139 CG3001-RC 929..1045 134..250 210 78.6 Plus
Hex-A-RB 2512 CG3001-RB 714..830 134..250 210 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15219663..15220264 618..17 3010 100 Minus
X 23542271 X 9586603..9586719 134..250 210 78.6 Plus
Blast to na_te.dros performed on 2015-02-10 23:00:18 has no hits.

BS13820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:32 Download gff for BS13820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8094-PA 1..601 17..617 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:22 Download gff for BS13820.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 60..666 10..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:41 Download gff for BS13820.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 60..666 10..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:41 Download gff for BS13820.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15219664..15220270 10..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:22 Download gff for BS13820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11107169..11107775 10..617 99   Minus

BS13820.pep Sequence

Translation from 16 to 1380

> BS13820.pep
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTK*

BS13820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-PA 454 CG8094-PA 1..454 1..454 2344 100 Plus
Hex-A-PC 448 CG3001-PC 2..440 6..452 1243 54.4 Plus
Hex-A-PB 448 CG3001-PB 2..440 6..452 1243 54.4 Plus
Hex-A-PA 541 CG3001-PA 95..533 6..452 1243 54.4 Plus
Hex-t2-PA 486 CG32849-PA 37..483 1..454 1046 46.5 Plus