Clone Sequence Records
BS13820.complete Sequence
1397 bp assembled on 2009-12-07
GenBank Submission: KX802974
> BS13820.complete
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCGCGAAGTTGACGAAAAGTCTCTAAACCGATCGGAGCAGCTG
TTCGAAAAGATGACGGCGGGCATGTACTTGGGCAACCTGGTGCGCCTTGT
GCTACTTCGTGCCCTCGAGCGCAAGCTGATCTTTAAACAGAGCAGTCGAC
GTCCAGAATTCGCCAGCGTGCTGCAGAGAAACGAAGAGGTTTTCGAGACG
CGCTACATTTCGGAAATCGAGGACGACTCCTTCCCAGAGTTTGCCAGCAC
AAGGAAGATTGTGAAAAATCTGTTTGGTCTAGAGAAGGCCTCCGTGGAGG
ACTGCCAGACTCTGAGATACATCTGCGAGTGCGTAGCTAAGCGAGCGGCT
ACATTAGTAGCCATCGGAGTCAGTGGGCTGGTGAACAGGACTTCCAACCG
CCGCGTGATAGTCGGCATGGATGGCTCCGTCTACCGATACCATCCAAAGT
TCGATGCCTACATGAGGCAAACACTCCAAAAGCTGGTGAAAGCAGACAAG
GAGTGGGACATCATGCTCTCGGAGGACGGATCCGGACGTGGAGCTGCGCT
GGTGGCCGCGGTGGCCAGTAAAACAAAGTAGAAGCTTTCTAGACCAT
BS13820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1365 | CG8094-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Hex-A-RC | 1347 | CG3001-PC | 106..222 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 1347 | CG3001-PB | 106..222 | 134..250 | 210 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 66..1430 | 17..1381 | 6825 | 100 | Plus |
Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 2512 | CG3001-RB | 714..830 | 134..250 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15218900..15220264 | 1381..17 | 6825 | 100 | Minus |
X | 23542271 | X | 9586603..9586719 | 134..250 | 210 | 78.6 | Plus |
Blast to na_te.dros performed 2014-11-28 01:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 8009..8045 | 1297..1333 | 113 | 78.4 | Plus |
BS13820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:38 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 149..1513 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:30 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 66..1430 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:56 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 149..1513 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:25 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 66..1430 | 17..1381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:25 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218900..15220264 | 17..1381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:30 Download gff for
BS13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11106405..11107769 | 17..1381 | 100 | | Minus |
BS13820.3prime Sequence
560 bp (557 high quality bases) assembled on 2006-10-13
> BS13820.3prime
ATGGTCTAGAAAGCTTCTACTTTGTTTTACTGGCCACCGCGGCCACCAGC
GCAGCTCCACGTCCGGATCCGTCCTCCGAGAGCATGATGTCCCACTCCTT
GTCTGCTTTCACCAGCTTTTGGAGTGTTTGCCTCATGTAGGCATCGAACT
TTGGATGGTATCGGTAGACGGAGCCATCCATGCCGACTATCACGCGGCGG
TTGGAAGTCCTGTTCACCAGCCCACTGACTCCGATGGCTACTAATGTAGC
CGCTCGCTTAGCTACGCACTCGCAGATGTATCTCAGAGTCTGGCAGTCCT
CCACGGAGGCCTTCTCTAGACCAAACAGATTTTTCACAATCTTCCTTGTG
CTGGCAAACTCTGGGAAGGAGTCGTCCTCGATTTCCGAAATGTAGCGCGT
CTCGAAAACCTCTTCGTTTCTCTGCAGCACGCTGGCGAATTCTGGACGTC
GACTGCTCTGTTTAAAGATCAGCTTGCGCTCGAGGGCACGAAGTAGCACA
AGGCGCACCAGGTTGCCCAAGTACATGCCCGCCGTCATCTTTTCGAACAG
CTGCTCCGAT
BS13820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8094-PA | 1365 | Hex-C-RA | 822..1365 | 560..17 | 2720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 887..1430 | 560..17 | 2720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15218900..15219443 | 17..560 | 2720 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 19:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 8009..8045 | 101..65 | 113 | 78.4 | Minus |
BS13820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:32 Download gff for
BS13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8094-PA | 822..1365 | 17..560 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:08:52 Download gff for
BS13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 887..1440 | 7..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:47 Download gff for
BS13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 887..1440 | 7..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:47 Download gff for
BS13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218890..15219443 | 7..560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:08:52 Download gff for
BS13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11106395..11106948 | 7..560 | 99 | | Plus |
BS13820.5prime Sequence
618 bp (555 high quality bases) assembled on 2006-10-13
> BS13820.5prime
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCA
BS13820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8094-PA | 1365 | Hex-C-RA | 1..602 | 17..618 | 3010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 66..667 | 17..618 | 3010 | 100 | Plus |
Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 2512 | CG3001-RB | 714..830 | 134..250 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15219663..15220264 | 618..17 | 3010 | 100 | Minus |
X | 23542271 | X | 9586603..9586719 | 134..250 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:00:18 has no hits.
BS13820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:32 Download gff for
BS13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8094-PA | 1..601 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:22 Download gff for
BS13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 60..666 | 10..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:41 Download gff for
BS13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 60..666 | 10..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:41 Download gff for
BS13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15219664..15220270 | 10..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:22 Download gff for
BS13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11107169..11107775 | 10..617 | 99 | | Minus |
BS13820.pep Sequence
Translation from 16 to 1380
> BS13820.pep
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTK*
BS13820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-PA | 454 | CG8094-PA | 1..454 | 1..454 | 2344 | 100 | Plus |
Hex-A-PC | 448 | CG3001-PC | 2..440 | 6..452 | 1243 | 54.4 | Plus |
Hex-A-PB | 448 | CG3001-PB | 2..440 | 6..452 | 1243 | 54.4 | Plus |
Hex-A-PA | 541 | CG3001-PA | 95..533 | 6..452 | 1243 | 54.4 | Plus |
Hex-t2-PA | 486 | CG32849-PA | 37..483 | 1..454 | 1046 | 46.5 | Plus |