Clone BS13822 Report

Search the DGRC for BS13822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG3999-RA
Protein status:BS13822.pep: full length peptide match
Sequenced Size:2990

Clone Sequence Records

BS13822.complete Sequence

2990 bp assembled on 2009-12-07

GenBank Submission: KX804958

> BS13822.complete
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGG
AAGCCTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTG
CCAAGCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGG
TGATGTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAGAAAAATGGGA
CCCTCGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCT
CCGGCGGAATTTGGAGCTGATATTGCAGTGGGAACCTCCCAGCGATTGGG
AGTTCCTCTGGGATACGGTGGCCCCCATGCCGGATTTTTTGCCTGCAAGC
AGAGCTTGGTGCGGCTAATGCCGGGAAGGATGATTGGCGTGACCAGGGAT
ATGGACGGAAACGATGCCTATCGTCTGGCCCTGCAAACCAGGGAGCAGCA
TATCCGGCGGGATAAGGCAACAAGTAACATTTGCACGGCACAGGCTCTTC
TGGCCAACATGTCGGCCATGTACGCCATCTACCACGGTCCGGAGGGTCTG
AAAGCCATGGCCAATCGCATCCACCATTTCACGTTGACCCTTCAAACGGG
TGTCCTGGGAGCGGGTCACGAAGTGATCAACAAGAACTTCTTCGACACAC
TTCACATTAGACTGGGTGGAGGTCAATCCCTTGAGGATCTCAAAGAGCGT
GCCGAGCACAAGCGCATTAATCTCCGATATCTTGAAGATGACACTGTTGG
CGTGGCCCTTGATGAAACGGTCAGTGTAGCCGATGTGGACGATCTGTTGT
GGGTCTTCAAGGCAGAGGCATCTGTGGAACACATTCTGGCGCGTAAAGAT
GTCCTTAAGAACTCGATTGAGAACTCCAAGTTCCTGCGCACTTCGCCCTA
TCTGCAGCACCCTATTTTCCAGAGCTATCACAGCGAGTCCCGCATGGTGC
GCTACATGAAAAAGCTGGAGAATAAGGACATCTCCCTGGTGCACTCCATG
ATCCCCCTGGGATCCTGCACTATGAAGCTGAACTCCACCACCGAGATGAT
GCCTTGTTCCTTCCGCCACTTCACCGATATCCATCCTTTTGCGCCGGTGG
AACAAGCCCAGGGATTCCATCAGATGTTCAAGGAACTGGAGCATGACCTA
TGCGAGATTACAGGATACGATCGTATCTCCTTCCAGCCGAACTCGGGGGC
CCAAGGAGAATATGCAGGACTGAGAGCCATCAGGAGCTACCATGAACACC
GAAATGAAGGACACAGAAATATTTGTCTGATTCCAATTTCTGCCCACGGC
ACAAATCCAGCTTCTGCACAAATGGCGGGTATGAAGGTGGAGCCTATTAG
AATTTTGTCGAATGGTTCCATCGACATGGCACACCTAAGAGCTAAGGCAG
AGGAGCACGCCCACGAGTTGTCCTGCCTAATGATTACCTATCCATCGACA
ATGGGCGTGTTCGAGGAAACGGTTGCCGATATTTGCACCCTGATCCACAA
GCATGGCGGACAGGTGTACCTGGATGGAGCCAACATGAATGCCCAGGTTG
GGCTGTGTCGACCTGGAGATTATGGCAGCGATGTTTCGCATCTCAACCTG
CACAAGACCTTCTGCATTCCGCATGGTGGTGGTGGTCCTGGAATGGGTCC
CATCGGCGTGAAAGCCCATTTGGCACCATACCTTCCTGGTCATCCTGTTG
TCAGTCCGTTGAGCAGCGAGGAGCACAGTTTTGGAGTCGTATCCGCCGCT
CCCTTCGGAAGCTCTGCCATTTTGCCCATATCCTGGTCGTACATTAAACT
CATGGGCAGCAGGGGTTTGAAGAGAGCTACCCAGGTGGCCATTCTCAATG
CAAACTACATGTCCAAGAGGCTGGAGCAGCATTACAAGACTCTCTACAAG
GCACCCAACTCTCAGCTGGTTGCGCATGAGTTCATTTTGGATATACGCGA
CCTGAAGAAATCGGCCAATATCGAGGCAGTGGATGTGGCCAAGCGACTCA
TGGATTACGGCTTCCATGCACCAACTATGTCTTGGCCCGTCGCTGGAACC
CTGATGATCGAGCCCACTGAATCGGAGGATAAGGAGGAGTTGGATAGGTT
CTGTGATGCCATGATTTCCATTCGAGAGGAGATTGCCGAGATCGAGGCGG
GTCGCATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAA
GCTCAGGTGATCTCGGATAAGTGGGATCGACCATATACACGGGAGCAGGC
TGCCTTCCCCGCCATCTTTGTAAAACCAGATGCCAAGATCTGGCCCACTG
TGGGCAGGATCGATGATGCCTATGGTGACAAGCACCTTGTGTGTACCTGT
CCGCCAATACTGCCTGATTTATAAAAGCTTTCTAGACCAT

BS13822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 2958 CG3999-PB 1..2958 17..2974 14760 99.9 Plus
CG3999-RA 2958 CG3999-PA 1..2958 17..2974 14760 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 62..3020 16..2974 14765 99.9 Plus
CG3999-RA 3197 CG3999-RA 62..3020 16..2974 14765 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10253585..10254919 1529..2863 6660 99.9 Plus
3R 32079331 3R 10252797..10253531 799..1533 3675 100 Plus
3R 32079331 3R 10252171..10252697 273..799 2620 99.8 Plus
3R 32079331 3R 10251579..10251756 16..193 890 100 Plus
3R 32079331 3R 10254981..10255091 2864..2974 555 100 Plus
3R 32079331 3R 10251887..10251967 192..272 405 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:27 has no hits.

BS13822.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:18 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3018 17..2972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:29 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3018 17..2972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:27 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3018 17..2972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:06 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3018 17..2972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:06 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10251580..10251756 17..193 100 -> Plus
3R 10251889..10251967 194..272 100 -> Plus
3R 10252171..10252697 273..799 99 -> Plus
3R 10252798..10253531 800..1533 100 -> Plus
3R 10253590..10254919 1534..2863 99 -> Plus
3R 10254981..10255089 2864..2972 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:29 Download gff for BS13822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6077302..6077478 17..193 100 -> Plus
arm_3R 6077611..6077689 194..272 100 -> Plus
arm_3R 6077893..6078419 273..799 99 -> Plus
arm_3R 6078520..6079253 800..1533 100 -> Plus
arm_3R 6079312..6080641 1534..2863 99 -> Plus
arm_3R 6080703..6080811 2864..2972 100   Plus

BS13822.3prime Sequence

614 bp (533 high quality bases) assembled on 2006-10-13

> BS13822.3prime
ATGGTCTAGAAAGCTTTTATAAATCAGGCAGTATTGGCGGACAGGTACAC
ACAAGGTGCTTGTCACCATAGGCATCATCGATCCTGCCCACAGTGGGCCA
GATCTTGGCATCTGGTTTTACAAAGATGGCGGGGAAGGCAGCCTGCTCCC
GTGTATATGGTCGATCCCACTTATCCGAGATCACCTGAGCTTGGGTGTGA
GGAGACATCTTCAGTGGATTGACTGCCTTGTCCATGCGACCCGCCTCGAT
CTCGGCAATCTCCTCTCGAATGGAAATCATGGCATCACAGAACCTATCCA
ACTCCTCCTTATCCTCCGATTCAGTGGGCTCGATCATCAGGGTTCCAGCG
ACGGGCCAAGACATAGTTGGTGCATGGAAGCCGTAATCCATGAGTCGCTT
GGCCACATCCACTGCCTCGATATTGGCCGATTTCTTCAGGTCGCGTATAT
CCAAAATGAACTCATGCGCAACCAGCTGAGAGTTGGGTGCCTTGTAGAGA
GTCTTGTAATGCTGCTCCAGCCTCTTGGACATGTAGTTTGCATTGAGAAT
GGCCACCTGGGTAGCTCTCTTCAAACCCCTGCTGCCCATGAGTTTAATGT
ACGACCAGGATATG

BS13822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PA 2958 CG3999-RA 2361..2958 614..17 2990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 2423..3020 614..17 2990 100 Minus
CG3999-RA 3197 CG3999-RA 2423..3020 614..17 2990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10254433..10254919 614..128 2435 100 Minus
3R 32079331 3R 10254981..10255091 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:25:14 has no hits.

BS13822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:35 Download gff for BS13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 2361..2958 17..614 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:22 Download gff for BS13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2423..3028 9..614 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:17 Download gff for BS13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2423..3028 9..614 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:17 Download gff for BS13822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10254433..10254919 128..614 100 -> Minus
3R 10254981..10255099 9..127 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:22 Download gff for BS13822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6080155..6080641 128..614 100 -> Minus
arm_3R 6080703..6080821 9..127 96   Minus

BS13822.5prime Sequence

609 bp (548 high quality bases) assembled on 2006-10-13

> BS13822.5prime
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAG

BS13822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PA 2958 CG3999-RA 1..593 17..609 2965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 62..655 16..609 2970 100 Plus
CG3999-RA 3197 CG3999-RA 62..655 16..609 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10252171..10252507 273..609 1685 100 Plus
3R 32079331 3R 10251579..10251756 16..193 890 100 Plus
3R 32079331 3R 10251887..10251967 192..272 405 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:44:36 has no hits.

BS13822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:35 Download gff for BS13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 1..593 17..609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:17 Download gff for BS13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 62..655 16..609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:58 Download gff for BS13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 62..655 16..609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:58 Download gff for BS13822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10251579..10251756 16..193 100 -> Plus
3R 10251889..10251967 194..272 100 -> Plus
3R 10252171..10252507 273..609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:17 Download gff for BS13822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6077301..6077478 16..193 100 -> Plus
arm_3R 6077611..6077689 194..272 100 -> Plus
arm_3R 6077893..6078229 273..609 100   Plus

BS13822.pep Sequence

Translation from 16 to 2973

> BS13822.pep
MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV
AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK
NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL
LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH
PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF
EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY
GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK
ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG
HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE
TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI
FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR
HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA
GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG
SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV
YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG
LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA
NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI
SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI
FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDL*

BS13822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PB 985 CG3999-PB 1..985 1..985 5156 100 Plus
CG3999-PA 985 CG3999-PA 1..985 1..985 5156 100 Plus