Clone Sequence Records
BS13824.3prime Sequence
342 bp (342 high quality bases) assembled on 2006-10-13
> BS13824.3prime
ATGGTCTAGAAAGCTTCTACTCCAATTTGGCCAGGATGTCGGACTCGCGG
AAGAGGAACAGCTCCTTCTGGTCACCCTCTAGGTTCACCTTGGTGCCACC
GAATTCGGGCAGCAGAACACGATCGCCCTCCTTCACGCCAATGGGAATGT
GGTTGCCAGTGGAGGCATTACGGGTGCCAGGGCCTACGGCCAGAACGGTG
CCCTCAAGTACTTTGCCCACCGCTTTCTCCGGCAAAACAATGCCTCCTTT
CGTCTTGGTCAGCGCCTCGGCACGCTGGATTAGGATGCGGTCCAGCATGG
GGATGATCTTCTTGATAGCGGCGGCCATGTCGACTGATAACT
BS13824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 312 | CG11267-RA | 1..312 | 328..17 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..425 | 328..16 | 1565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 326..164 | 815 | 100 | Minus |
3L | 28110227 | 3L | 13016587..13016734 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:51:24 has no hits.
BS13824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:37 Download gff for
BS13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 17..328 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:38 Download gff for
BS13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..428 | 12..328 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:20 Download gff for
BS13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..428 | 12..328 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:20 Download gff for
BS13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016346..13016518 | 164..338 | 97 | -> | Minus |
3L | 13016587..13016737 | 12..163 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:38 Download gff for
BS13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009446..13009618 | 164..338 | 97 | -> | Minus |
arm_3L | 13009687..13009837 | 12..163 | 98 | | Minus |
BS13824.5prime Sequence
342 bp (342 high quality bases) assembled on 2006-10-13
> BS13824.5prime
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGTAGAAGCTTTCTAGACC
BS13824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 312 | CG11267-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..425 | 17..329 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 19..181 | 815 | 100 | Plus |
3L | 28110227 | 3L | 13016587..13016734 | 182..329 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:12:10 has no hits.
BS13824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:37 Download gff for
BS13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 17..328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:56 Download gff for
BS13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..428 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:16 Download gff for
BS13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..428 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:16 Download gff for
BS13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016346..13016518 | 7..181 | 97 | -> | Plus |
3L | 13016587..13016737 | 182..333 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:56 Download gff for
BS13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009446..13009618 | 7..181 | 97 | -> | Plus |
arm_3L | 13009687..13009837 | 182..333 | 98 | | Plus |
BS13824.complete Sequence
344 bp assembled on 2006-11-01
GenBank Submission: FJ637535
> BS13824.complete
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGTAGAAGCTTTCTAGACCAT
BS13824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 312 | CG11267-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..425 | 17..329 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 19..181 | 815 | 100 | Plus |
3L | 28110227 | 3L | 13016587..13016734 | 182..329 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:28:27 has no hits.
BS13824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:33 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 1..312 | 17..328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:51 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 106..421 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:05 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..424 | 17..328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:34 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 106..421 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:05 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..424 | 17..328 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:05 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016355..13016518 | 17..181 | 99 | -> | Plus |
3L | 13016587..13016733 | 182..328 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:05 Download gff for
BS13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009687..13009833 | 182..328 | 100 | | Plus |
arm_3L | 13009455..13009618 | 17..181 | 99 | -> | Plus |
BS13824.pep Sequence
Translation from 16 to 327
> BS13824.pep
MAAAIKKIIPMLDRILIQRAEALTKTKGGIVLPEKAVGKVLEGTVLAVGP
GTRNASTGNHIPIGVKEGDRVLLPEFGGTKVNLEGDQKELFLFRESDILA
KLE*
BS13824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 103 | CG11267-PA | 1..103 | 1..103 | 509 | 100 | Plus |
CG9920-PA | 102 | CG9920-PA | 1..102 | 1..103 | 333 | 64.1 | Plus |