Clone BS13824 Report

Search the DGRC for BS13824

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG11267-RA
Protein status:BS13824.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13824.3prime Sequence

342 bp (342 high quality bases) assembled on 2006-10-13

> BS13824.3prime
ATGGTCTAGAAAGCTTCTACTCCAATTTGGCCAGGATGTCGGACTCGCGG
AAGAGGAACAGCTCCTTCTGGTCACCCTCTAGGTTCACCTTGGTGCCACC
GAATTCGGGCAGCAGAACACGATCGCCCTCCTTCACGCCAATGGGAATGT
GGTTGCCAGTGGAGGCATTACGGGTGCCAGGGCCTACGGCCAGAACGGTG
CCCTCAAGTACTTTGCCCACCGCTTTCTCCGGCAAAACAATGCCTCCTTT
CGTCTTGGTCAGCGCCTCGGCACGCTGGATTAGGATGCGGTCCAGCATGG
GGATGATCTTCTTGATAGCGGCGGCCATGTCGACTGATAACT

BS13824.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-PA 312 CG11267-RA 1..312 328..17 1560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-RA 594 CG11267-RA 113..425 328..16 1565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13016356..13016518 326..164 815 100 Minus
3L 28110227 3L 13016587..13016734 163..16 740 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:51:24 has no hits.

BS13824.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:37 Download gff for BS13824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-PA 1..312 17..328 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:38 Download gff for BS13824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..428 12..328 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:20 Download gff for BS13824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..428 12..328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:20 Download gff for BS13824.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13016346..13016518 164..338 97 -> Minus
3L 13016587..13016737 12..163 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:38 Download gff for BS13824.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13009446..13009618 164..338 97 -> Minus
arm_3L 13009687..13009837 12..163 98   Minus

BS13824.5prime Sequence

342 bp (342 high quality bases) assembled on 2006-10-13

> BS13824.5prime
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGTAGAAGCTTTCTAGACC

BS13824.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-PA 312 CG11267-RA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-RA 594 CG11267-RA 113..425 17..329 1565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13016356..13016518 19..181 815 100 Plus
3L 28110227 3L 13016587..13016734 182..329 740 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:12:10 has no hits.

BS13824.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:37 Download gff for BS13824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-PA 1..312 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:56 Download gff for BS13824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..428 17..333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:16 Download gff for BS13824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..428 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:16 Download gff for BS13824.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13016346..13016518 7..181 97 -> Plus
3L 13016587..13016737 182..333 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:56 Download gff for BS13824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13009446..13009618 7..181 97 -> Plus
arm_3L 13009687..13009837 182..333 98   Plus

BS13824.complete Sequence

344 bp assembled on 2006-11-01

GenBank Submission: FJ637535

> BS13824.complete
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGTAGAAGCTTTCTAGACCAT

BS13824.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-RA 312 CG11267-PA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-RA 594 CG11267-RA 113..425 17..329 1565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13016356..13016518 19..181 815 100 Plus
3L 28110227 3L 13016587..13016734 182..329 740 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:28:27 has no hits.

BS13824.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:33 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 1..312 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:51 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 106..421 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:05 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..424 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:34 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 106..421 17..333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:05 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
CG11267-RA 113..424 17..328 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:05 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13016355..13016518 17..181 99 -> Plus
3L 13016587..13016733 182..328 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:05 Download gff for BS13824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13009687..13009833 182..328 100   Plus
arm_3L 13009455..13009618 17..181 99 -> Plus

BS13824.pep Sequence

Translation from 16 to 327

> BS13824.pep
MAAAIKKIIPMLDRILIQRAEALTKTKGGIVLPEKAVGKVLEGTVLAVGP
GTRNASTGNHIPIGVKEGDRVLLPEFGGTKVNLEGDQKELFLFRESDILA
KLE*

BS13824.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11267-PA 103 CG11267-PA 1..103 1..103 509 100 Plus
CG9920-PA 102 CG9920-PA 1..102 1..103 333 64.1 Plus