Clone Sequence Records
BS13829.complete Sequence
629 bp assembled on 2010-07-02
> BS13829.complete
GAAGTTATCAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGC
AGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAG
GTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACT
CCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACAC
CTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGC
ACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGC
CAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCG
AGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTC
CAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCC
CGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGC
TGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAG
TACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCC
CCAGGCCCAATGAAAGCTTTCTAGACCAT
BS13829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 738 | CG9812-PE | 1..597 | 17..613 | 2985 | 100 | Plus |
| CG9812-RB | 738 | CG9812-PB | 1..597 | 17..613 | 2985 | 100 | Plus |
| CG9812-RD | 999 | CG9812-PD | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 1223 | CG9812-RE | 131..727 | 17..613 | 2985 | 100 | Plus |
| CG9812-RB | 1313 | CG9812-RB | 221..817 | 17..613 | 2985 | 100 | Plus |
| CG9812-RD | 1574 | CG9812-RD | 221..718 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23414492..23414766 | 519..245 | 1360 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23414831..23415003 | 246..74 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 23413035..23413133 | 613..515 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 23419227..23419286 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:48 has no hits.
BS13829.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:51 Download gff for
BS13829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 226..816 | 22..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:06 Download gff for
BS13829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 226..816 | 22..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:14 Download gff for
BS13829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 226..816 | 22..612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:14 Download gff for
BS13829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23413036..23413133 | 515..612 | 100 | <- | Minus |
| 2R | 23414497..23414765 | 246..514 | 100 | <- | Minus |
| 2R | 23414832..23415000 | 77..245 | 100 | <- | Minus |
| 2R | 23419227..23419281 | 22..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:06 Download gff for
BS13829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19300559..19300656 | 515..612 | 100 | <- | Minus |
| arm_2R | 19302020..19302288 | 246..514 | 100 | <- | Minus |
| arm_2R | 19302355..19302523 | 77..245 | 100 | <- | Minus |
| arm_2R | 19306750..19306804 | 22..76 | 100 | | Minus |
BS13829.5prime Sequence
560 bp (402 high quality bases) assembled on 2010-02-21
> BS13829.5prime
TTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAGGTGGGCGTGAA
CTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACTCCTTACGGGCT
ACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACACCTTGGGGCTCC
CGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGCACAGCCGGCGT
GGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGCCAGTGCGCTTC
TGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCGAGGCGCACAGT
CCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTCCAGCCGGCATA
TCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCCCGTCGTCTCCA
GCCACATCCAAAAGGTCTAGCCGCCCCAGAAGTACTCGCTGATCAACCAA
GATGGCAGGAGCGAGGGCCAGGTGGTCCAGGCCCACAAATACAAGTTCGT
CCAGCGAACCCAGGGCCGTGTAACATCGCTTCCTGGCGCCCCAAGGCCCA
ATGAAAGCTT
BS13829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 1223 | CG9812-RE | 176..727 | 1..554 | 2510 | 97.3 | Plus |
| CG9812-RB | 1313 | CG9812-RB | 266..817 | 1..554 | 2510 | 97.3 | Plus |
| CG9812-RD | 1574 | CG9812-RD | 266..718 | 1..453 | 2205 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23414496..23414766 | 454..184 | 1310 | 98.9 | Minus |
| 2R | 25286936 | 2R | 23414831..23415003 | 185..13 | 850 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23413035..23413130 | 554..457 | 270 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:27:30 has no hits.
BS13829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:27 Download gff for
BS13829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 266..822 | 1..560 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 00:22:23 Download gff for
BS13829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 266..822 | 1..560 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:44 Download gff for
BS13829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 266..822 | 1..560 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:44 Download gff for
BS13829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23414497..23414765 | 185..453 | 98 | <- | Minus |
| 2R | 23414832..23415006 | 7..184 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 00:22:23 Download gff for
BS13829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19302020..19302288 | 185..453 | 98 | <- | Minus |
| arm_2R | 19302355..19302529 | 7..184 | 97 | | Minus |
BS13829.3prime Sequence
485 bp (366 high quality bases) assembled on 2010-02-21
> BS13829.3prime
TCCTTGCATCTTGGTTGATCAGCGAGTACTTCTTGGGCGGCTTGACCTTT
TGGATGTGGCTGGTGACGACGGGGCCGGTGGTGGGTGAGACGGGCACAGG
ATCAGCAGGATATGCCGGCTGGACTGAGTGCTGCGAGGAGGAGATCACAG
TGCGACCAGGACTGTGCGCCTCGGCTCCGATATAACCATGTTCACCGGCG
CTGCCGCCCAGAAGCGCACTGGCTCCCACCGAGGGATTGGCCTGAGCGGC
GGCGTATCCCACGCCGGCTGTGCGTCCATCCAGATTGCCGCCCAGACCGG
CGGCTGCCCGGGAGCCCCAAGGTGTTCCGGCCGAGGCGCTGAGTCCGCCG
TGGGCAGAGTTGCCCCGTAAGGAGTCCGCCCGAGTCCCGCATCTGCGTTG
ATATCCTGGTAAATTCACCCCCCCCTTTGCCATCTCGGAAAGTAAACAGC
TGTGCCCGCACCAAGCTAGCCGTTCGCACCAAACA
BS13829.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 1223 | CG9812-RE | 167..635 | 473..1 | 2145 | 97.5 | Minus |
| CG9812-RB | 1313 | CG9812-RB | 257..725 | 473..1 | 2145 | 97.5 | Minus |
| CG9812-RD | 1574 | CG9812-RD | 257..718 | 473..8 | 2110 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23414492..23414766 | 3..277 | 1345 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23414831..23415003 | 276..452 | 595 | 94.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:23:52 has no hits.
BS13829.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:26 Download gff for
BS13829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 246..725 | 1..484 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:52:57 Download gff for
BS13829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 246..725 | 1..484 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:53 Download gff for
BS13829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 246..725 | 1..484 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:53 Download gff for
BS13829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23414490..23414765 | 1..276 | 98 | <- | Plus |
| 2R | 23414832..23415000 | 277..449 | 94 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:52:57 Download gff for
BS13829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19302013..19302288 | 1..276 | 98 | <- | Plus |
| arm_2R | 19302355..19302523 | 277..449 | 94 | <- | Plus |
BS13829.pep Sequence
Translation from 16 to 612
> BS13829.pep
MFVLLGALCLLQTASLVPAQLFTFRDGKVGVNFAGYHADAGLGGLLTGNS
AHGGLSASAGTPWGSRAAAGLGGNLDGRTAGVGYAAAQANPSVGASALLG
GSAGEHGYIGAEAHSPGRTVISSSQHSVQPAYPADPVPVSPTTGPVVTSH
IQKVKPPKKYSLINQDARSEAKVVQAHKYKSVQRPQAVNNRFLAPQAQ*
BS13829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-PE | 245 | CG9812-PE | 1..198 | 1..198 | 1018 | 100 | Plus |
| CG9812-PB | 245 | CG9812-PB | 1..198 | 1..198 | 1018 | 100 | Plus |
| CG9812-PD | 332 | CG9812-PD | 1..191 | 1..193 | 873 | 89.1 | Plus |
