Clone BS13830 Report

Search the DGRC for BS13830

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptEtf-QO-RA
Protein status:BS13830.pep: full length peptide match
Sequenced Size:1847

Clone Sequence Records

BS13830.complete Sequence

1847 bp assembled on 2009-12-07

GenBank Submission: KX804292

> BS13830.complete
GAAGTTATCAGTCGACATGTCGGCACTCATGAAAATGCACAGAGTTCGGA
GACTCTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATAT
CCCAGGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCG
CTGGACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCA
TCGTCGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAA
CTGGCGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGC
CGCCGAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCT
CGCTGAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAAC
ACACCCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCAT
CTCCATTCCGGTCTTTAAGGGCTGGCCCATGGACAACCATGGCAACTACG
TAGTTCGCTTGGGCCACTTGGTCAAGTGGCTTGGAGATCAGGCGGAGGCT
CTGGGCGTGGAGATCTATCCCGGCTGTGCTGCCTCCGAGGTGCTCTTCCA
CGAGGATGGCAGTGTCAAGGGCATTGCCACCAACGATGTGGGCATTGCCA
AGAGCGGAGCTCCCAAGGACACCTTTGCACGTGGCATGGAGTTGCACGCC
AAGACTACCATCTTTGCCGAAGGCTGCCGGGGTCACCTGACCAAGCAGAT
TATGCAGAAGTTCGGACTTAACGAGGGCAGCGAACCACAGGCCTATGGAA
TCGGTCTGAAAGAGGTCTGGGAGATTGCCCCCGAGAAGCATCAACCTGGT
TTGGTGGAGCATACCATTGGCTGGCCTTTGGACCGCTTCACATATGGCGG
CTCCTTCTTGTACCATTTGAACGAGCCCACACCCACCATTGCAGTGGGCT
TTGTGGTGGGCTTGAACTACAAGAACCCCTGGCTCAGTCCCTTCCAGGAG
TTCCAGCGTTTCAAGACGCATCCCAAGGTGCGAGACGTCTTCGAGGGCGC
CACTCGAATTGCCTATGGAGCACGAGCAATCAATGAGGGTGGCTTCCAAA
GTCTGCCGCAGAAGCTGTCCTTTCCGGGAGGTTGCCTTGTGGGCTGCAGT
GCTGGCTTTTTGAATGTCCCTCGCATTAAGGGCTCCCATTACGCGATGAA
GAGCGGCATGCTGGCGGCGGAGAGTGCCTTTGAAGCCATCAATGCGGATG
CACAATCGACGGCTGGTGTGGAACCCACAGGCTATGCGGAGAAAATCAAG
GACTCCTTTGTATGGAAGGATCTGTACAGTGTGCGAAATGTGCACCCTTC
TTTCCACAATCCATTGGGACTGTACGGTGGTCTTGTGCTCAGTGGCTTCT
CCATTTTCATGGGCGGTCGGGAACCATGGACCCTAAAACACGGTCCCCAG
GATCACGAGTCCTTGAAGCCAGCTAGCTCCTGCCCGCCCATTGTTTACCC
CAAGCCCGATGGCAAGATCTCCTTCGATCTGCTGTCTTCGGTAGCACTGA
CGGGCACAAACCACGAGGGCGACCAGCCCGCCCATCTGACCCTCAAGGAC
GACCGCATCCCCGTGGACCATAATTTGGCGCTGTACGAGGGACCCGAGCA
GAGATTCTGCCCCGCTGGCGTTTACGAGTACGTGCCCAACGAGGAGGGCG
GCAACATGAAGCTGCAAATTAACGCCCAGAACTGCATCCACTGCAAGACC
TGTGATATCAAGGACCCCAAGCAGAACATCAACTGGGTGGTGCCCGAGGG
AGGTGGCGGTCCCGCCTACAACGGCATGTGAAAGCTTTCTAGACCAT

BS13830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-RB 1815 CG12140-PB 1..1815 17..1831 9075 100 Plus
Etf-QO-RA 1815 CG12140-PA 1..1815 17..1831 9075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-RB 2243 CG12140-RB 306..2123 17..1834 9090 100 Plus
Etf-QO-RA 2300 CG12140-RA 363..2180 17..1834 9090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9911675..9912248 270..843 2870 100 Plus
2R 25286936 2R 9912828..9913368 1294..1834 2705 100 Plus
2R 25286936 2R 9912314..9912763 844..1293 2250 100 Plus
2R 25286936 2R 9911392..9911621 43..272 1150 100 Plus
Blast to na_te.dros performed 2014-11-28 01:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3676..3730 1514..1460 122 69.1 Minus

BS13830.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:07 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 363..2176 17..1830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:08 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 363..2176 17..1830 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:10 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
CG12140-RA 363..2176 17..1830 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:28 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 363..2176 17..1830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:28 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9911394..9911620 45..271 100 -> Plus
2R 9911255..9911282 17..44 100 -> Plus
2R 9911677..9912248 272..843 100 -> Plus
2R 9912314..9912763 844..1293 100 -> Plus
2R 9912828..9913364 1294..1830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:08 Download gff for BS13830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5798899..5799125 45..271 100 -> Plus
arm_2R 5798760..5798787 17..44 100 -> Plus
arm_2R 5799182..5799753 272..843 100 -> Plus
arm_2R 5799819..5800268 844..1293 100 -> Plus
arm_2R 5800333..5800869 1294..1830 100   Plus

BS13830.3prime Sequence

601 bp (460 high quality bases) assembled on 2006-10-13

> BS13830.3prime
ATGGTCTAGAAAGCTTTCACATGCCGTTGTAGGCGGGACCGCCACCTCCC
TCGGGCACCACCCAGTTGATGTTCTGCTTGGGGTCCTTGATATCACAGGT
CTTGCAGTGGATGCAGTTCTGGGCGTTAATTTGCAGCTTCATGTTGCCGC
CCTCCTCGTTGGGCACGTACTCGTAAACGCCAGCGGGGCAGAATCTCTGC
TCGGGTCCCTCGTACAGCGCCAAATTATGGTCCACGGGGATGCGGTCGTC
CTTGAGGGTCAGATGGGCGGGCTGGTCGCCCTCGTGGTTTGTGCCCGTCA
GTGCTACCGAAGACAGCAGATCGAAGGAGATCTTGCCATCGGGCTTGGGG
TAAACAATGGGCGGGCAGGAGCTAGCTGGCTTCAAGGACTCGTGATCCTG
GGGACCGTGTTTTAGGGTCCATGGTTCCCGACCGCCCATGAAAATGGAGA
AGCCACTGAGCACAAGACCACCGTACAGTCCCAATGGATTGTGGAAAGAA
GGGTGCACATTTCGCACACTGTACAGATCCTTCCATACAAAGGAGTCCTT
GATTTTCTCCGCATAACCTGTGGGTTCCACACCAGCCGTCGATTGTGCAT
C

BS13830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12140-PA 1815 CG12140-RA 1231..1815 601..17 2900 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-RB 2243 CG12140-RB 1536..2123 601..14 2925 99.8 Minus
Etf-QO-RA 2300 CG12140-RA 1593..2180 601..14 2925 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9912828..9913368 554..14 2705 100 Minus
2R 25286936 2R 9912717..9912763 601..555 220 97.9 Minus
Blast to na_te.dros performed 2015-02-13 07:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3676..3730 334..388 122 69.1 Plus

BS13830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:40 Download gff for BS13830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12140-PA 1231..1815 17..601 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:45 Download gff for BS13830.3prime
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 1593..2188 7..601 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:53 Download gff for BS13830.3prime
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 1593..2188 7..601 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:53 Download gff for BS13830.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9912717..9912763 555..601 97 -> Minus
2R 9912828..9913376 7..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:45 Download gff for BS13830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5800222..5800268 555..601 97 -> Minus
arm_2R 5800333..5800881 7..554 99   Minus

BS13830.5prime Sequence

556 bp (492 high quality bases) assembled on 2006-10-13

> BS13830.5prime
GAAGTTATCAGTCGACATGTCGGCACTCATGAAAATGCACAGAGTTCGGA
GACTCTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATAT
CCCAGGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCG
CTGGACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCA
TCGTCGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAA
CTGGCGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGC
CGCCGAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCT
CGCTGAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAAC
ACACCCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCAT
CTCCATTCCGGTCTTTTAAGGCTGGCCCATGGACAACCATGGCAACTACG
TAGTTCGCTTGAGCCACTTGGTCAAGTGGCTTGAAGATCAGGCGGAGGCT
CTGGGC

BS13830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12140-PA 1815 CG12140-RA 1..540 17..556 2600 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-RB 2243 CG12140-RB 306..845 17..556 2640 99.3 Plus
Etf-QO-RA 2300 CG12140-RA 363..902 17..556 2640 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9911675..9911961 270..556 1375 98.6 Plus
2R 25286936 2R 9911392..9911621 43..272 1150 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:00:42 has no hits.

BS13830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for BS13830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12140-PA 1..540 17..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:53 Download gff for BS13830.5prime
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 355..902 10..556 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:40 Download gff for BS13830.5prime
Subject Subject Range Query Range Percent Splice Strand
Etf-QO-RA 355..902 10..556 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:40 Download gff for BS13830.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9911394..9911620 45..271 100 -> Plus
2R 9911677..9911961 272..556 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:53 Download gff for BS13830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5798899..5799125 45..271 100 -> Plus
arm_2R 5799182..5799466 272..556 98   Plus

BS13830.pep Sequence

Translation from 16 to 1830

> BS13830.pep
MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD
MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG
HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF
KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV
KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG
LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH
LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY
GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA
AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL
GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK
ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA
GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA
YNGM*

BS13830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Etf-QO-PB 604 CG12140-PB 1..604 1..604 3244 100 Plus
Etf-QO-PA 604 CG12140-PA 1..604 1..604 3244 100 Plus