Clone Sequence Records
BS13830.complete Sequence
1847 bp assembled on 2009-12-07
GenBank Submission: KX804292
> BS13830.complete
GAAGTTATCAGTCGACATGTCGGCACTCATGAAAATGCACAGAGTTCGGA
GACTCTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATAT
CCCAGGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCG
CTGGACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCA
TCGTCGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAA
CTGGCGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGC
CGCCGAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCT
CGCTGAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAAC
ACACCCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCAT
CTCCATTCCGGTCTTTAAGGGCTGGCCCATGGACAACCATGGCAACTACG
TAGTTCGCTTGGGCCACTTGGTCAAGTGGCTTGGAGATCAGGCGGAGGCT
CTGGGCGTGGAGATCTATCCCGGCTGTGCTGCCTCCGAGGTGCTCTTCCA
CGAGGATGGCAGTGTCAAGGGCATTGCCACCAACGATGTGGGCATTGCCA
AGAGCGGAGCTCCCAAGGACACCTTTGCACGTGGCATGGAGTTGCACGCC
AAGACTACCATCTTTGCCGAAGGCTGCCGGGGTCACCTGACCAAGCAGAT
TATGCAGAAGTTCGGACTTAACGAGGGCAGCGAACCACAGGCCTATGGAA
TCGGTCTGAAAGAGGTCTGGGAGATTGCCCCCGAGAAGCATCAACCTGGT
TTGGTGGAGCATACCATTGGCTGGCCTTTGGACCGCTTCACATATGGCGG
CTCCTTCTTGTACCATTTGAACGAGCCCACACCCACCATTGCAGTGGGCT
TTGTGGTGGGCTTGAACTACAAGAACCCCTGGCTCAGTCCCTTCCAGGAG
TTCCAGCGTTTCAAGACGCATCCCAAGGTGCGAGACGTCTTCGAGGGCGC
CACTCGAATTGCCTATGGAGCACGAGCAATCAATGAGGGTGGCTTCCAAA
GTCTGCCGCAGAAGCTGTCCTTTCCGGGAGGTTGCCTTGTGGGCTGCAGT
GCTGGCTTTTTGAATGTCCCTCGCATTAAGGGCTCCCATTACGCGATGAA
GAGCGGCATGCTGGCGGCGGAGAGTGCCTTTGAAGCCATCAATGCGGATG
CACAATCGACGGCTGGTGTGGAACCCACAGGCTATGCGGAGAAAATCAAG
GACTCCTTTGTATGGAAGGATCTGTACAGTGTGCGAAATGTGCACCCTTC
TTTCCACAATCCATTGGGACTGTACGGTGGTCTTGTGCTCAGTGGCTTCT
CCATTTTCATGGGCGGTCGGGAACCATGGACCCTAAAACACGGTCCCCAG
GATCACGAGTCCTTGAAGCCAGCTAGCTCCTGCCCGCCCATTGTTTACCC
CAAGCCCGATGGCAAGATCTCCTTCGATCTGCTGTCTTCGGTAGCACTGA
CGGGCACAAACCACGAGGGCGACCAGCCCGCCCATCTGACCCTCAAGGAC
GACCGCATCCCCGTGGACCATAATTTGGCGCTGTACGAGGGACCCGAGCA
GAGATTCTGCCCCGCTGGCGTTTACGAGTACGTGCCCAACGAGGAGGGCG
GCAACATGAAGCTGCAAATTAACGCCCAGAACTGCATCCACTGCAAGACC
TGTGATATCAAGGACCCCAAGCAGAACATCAACTGGGTGGTGCCCGAGGG
AGGTGGCGGTCCCGCCTACAACGGCATGTGAAAGCTTTCTAGACCAT
BS13830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Etf-QO-RB | 1815 | CG12140-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Etf-QO-RA | 1815 | CG12140-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Etf-QO-RB | 2243 | CG12140-RB | 306..2123 | 17..1834 | 9090 | 100 | Plus |
Etf-QO-RA | 2300 | CG12140-RA | 363..2180 | 17..1834 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9911675..9912248 | 270..843 | 2870 | 100 | Plus |
2R | 25286936 | 2R | 9912828..9913368 | 1294..1834 | 2705 | 100 | Plus |
2R | 25286936 | 2R | 9912314..9912763 | 844..1293 | 2250 | 100 | Plus |
2R | 25286936 | 2R | 9911392..9911621 | 43..272 | 1150 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3676..3730 | 1514..1460 | 122 | 69.1 | Minus |
BS13830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:07 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12140-RA | 363..2176 | 17..1830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:08 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 363..2176 | 17..1830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:10 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12140-RA | 363..2176 | 17..1830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:28 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 363..2176 | 17..1830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:28 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9911394..9911620 | 45..271 | 100 | -> | Plus |
2R | 9911255..9911282 | 17..44 | 100 | -> | Plus |
2R | 9911677..9912248 | 272..843 | 100 | -> | Plus |
2R | 9912314..9912763 | 844..1293 | 100 | -> | Plus |
2R | 9912828..9913364 | 1294..1830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:08 Download gff for
BS13830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5798899..5799125 | 45..271 | 100 | -> | Plus |
arm_2R | 5798760..5798787 | 17..44 | 100 | -> | Plus |
arm_2R | 5799182..5799753 | 272..843 | 100 | -> | Plus |
arm_2R | 5799819..5800268 | 844..1293 | 100 | -> | Plus |
arm_2R | 5800333..5800869 | 1294..1830 | 100 | | Plus |
BS13830.3prime Sequence
601 bp (460 high quality bases) assembled on 2006-10-13
> BS13830.3prime
ATGGTCTAGAAAGCTTTCACATGCCGTTGTAGGCGGGACCGCCACCTCCC
TCGGGCACCACCCAGTTGATGTTCTGCTTGGGGTCCTTGATATCACAGGT
CTTGCAGTGGATGCAGTTCTGGGCGTTAATTTGCAGCTTCATGTTGCCGC
CCTCCTCGTTGGGCACGTACTCGTAAACGCCAGCGGGGCAGAATCTCTGC
TCGGGTCCCTCGTACAGCGCCAAATTATGGTCCACGGGGATGCGGTCGTC
CTTGAGGGTCAGATGGGCGGGCTGGTCGCCCTCGTGGTTTGTGCCCGTCA
GTGCTACCGAAGACAGCAGATCGAAGGAGATCTTGCCATCGGGCTTGGGG
TAAACAATGGGCGGGCAGGAGCTAGCTGGCTTCAAGGACTCGTGATCCTG
GGGACCGTGTTTTAGGGTCCATGGTTCCCGACCGCCCATGAAAATGGAGA
AGCCACTGAGCACAAGACCACCGTACAGTCCCAATGGATTGTGGAAAGAA
GGGTGCACATTTCGCACACTGTACAGATCCTTCCATACAAAGGAGTCCTT
GATTTTCTCCGCATAACCTGTGGGTTCCACACCAGCCGTCGATTGTGCAT
C
BS13830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12140-PA | 1815 | CG12140-RA | 1231..1815 | 601..17 | 2900 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Etf-QO-RB | 2243 | CG12140-RB | 1536..2123 | 601..14 | 2925 | 99.8 | Minus |
Etf-QO-RA | 2300 | CG12140-RA | 1593..2180 | 601..14 | 2925 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9912828..9913368 | 554..14 | 2705 | 100 | Minus |
2R | 25286936 | 2R | 9912717..9912763 | 601..555 | 220 | 97.9 | Minus |
Blast to na_te.dros performed 2015-02-13 07:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3676..3730 | 334..388 | 122 | 69.1 | Plus |
BS13830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:40 Download gff for
BS13830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12140-PA | 1231..1815 | 17..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:45 Download gff for
BS13830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 1593..2188 | 7..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:53 Download gff for
BS13830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 1593..2188 | 7..601 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:53 Download gff for
BS13830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9912717..9912763 | 555..601 | 97 | -> | Minus |
2R | 9912828..9913376 | 7..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:45 Download gff for
BS13830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5800222..5800268 | 555..601 | 97 | -> | Minus |
arm_2R | 5800333..5800881 | 7..554 | 99 | | Minus |
BS13830.5prime Sequence
556 bp (492 high quality bases) assembled on 2006-10-13
> BS13830.5prime
GAAGTTATCAGTCGACATGTCGGCACTCATGAAAATGCACAGAGTTCGGA
GACTCTTCAGCCCCGCTCTGGCTCGCAGCATCTCCGATGTGGCCAAATAT
CCCAGGATAACCACCCACTATACGCTGAATCCCCGCGAGAAGGATGAGCG
CTGGACGGAAGTGGATATGGAGCGTTGTGTTGAGGAGGTGGACCTGGTCA
TCGTCGGTGGAGGACCTGCTGGAATGTCGGCGGCTATTAGGGCGAAGCAA
CTGGCGGCGGAAAAGGATCAGGAAATCCGCGTCTGCGTAGTGGAAAAGGC
CGCCGAAGTTGGCGGACATATTCTCTCCGGCGCCGTCATAGATCCAATCT
CGCTGAACGAGCTTATCCCGGACTGGCAAGAGCAGGGAGCTCCTCTAAAC
ACACCCGTGACCAAGGATACTTTCTCCTTCCTCACCGGATCCGGCCGCAT
CTCCATTCCGGTCTTTTAAGGCTGGCCCATGGACAACCATGGCAACTACG
TAGTTCGCTTGAGCCACTTGGTCAAGTGGCTTGAAGATCAGGCGGAGGCT
CTGGGC
BS13830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12140-PA | 1815 | CG12140-RA | 1..540 | 17..556 | 2600 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Etf-QO-RB | 2243 | CG12140-RB | 306..845 | 17..556 | 2640 | 99.3 | Plus |
Etf-QO-RA | 2300 | CG12140-RA | 363..902 | 17..556 | 2640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9911675..9911961 | 270..556 | 1375 | 98.6 | Plus |
2R | 25286936 | 2R | 9911392..9911621 | 43..272 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:00:42 has no hits.
BS13830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for
BS13830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12140-PA | 1..540 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:40:53 Download gff for
BS13830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 355..902 | 10..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:40 Download gff for
BS13830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Etf-QO-RA | 355..902 | 10..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:40 Download gff for
BS13830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9911394..9911620 | 45..271 | 100 | -> | Plus |
2R | 9911677..9911961 | 272..556 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:40:53 Download gff for
BS13830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5798899..5799125 | 45..271 | 100 | -> | Plus |
arm_2R | 5799182..5799466 | 272..556 | 98 | | Plus |
BS13830.pep Sequence
Translation from 16 to 1830
> BS13830.pep
MSALMKMHRVRRLFSPALARSISDVAKYPRITTHYTLNPREKDERWTEVD
MERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGG
HILSGAVIDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVF
KGWPMDNHGNYVVRLGHLVKWLGDQAEALGVEIYPGCAASEVLFHEDGSV
KGIATNDVGIAKSGAPKDTFARGMELHAKTTIFAEGCRGHLTKQIMQKFG
LNEGSEPQAYGIGLKEVWEIAPEKHQPGLVEHTIGWPLDRFTYGGSFLYH
LNEPTPTIAVGFVVGLNYKNPWLSPFQEFQRFKTHPKVRDVFEGATRIAY
GARAINEGGFQSLPQKLSFPGGCLVGCSAGFLNVPRIKGSHYAMKSGMLA
AESAFEAINADAQSTAGVEPTGYAEKIKDSFVWKDLYSVRNVHPSFHNPL
GLYGGLVLSGFSIFMGGREPWTLKHGPQDHESLKPASSCPPIVYPKPDGK
ISFDLLSSVALTGTNHEGDQPAHLTLKDDRIPVDHNLALYEGPEQRFCPA
GVYEYVPNEEGGNMKLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPA
YNGM*
BS13830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Etf-QO-PB | 604 | CG12140-PB | 1..604 | 1..604 | 3244 | 100 | Plus |
Etf-QO-PA | 604 | CG12140-PA | 1..604 | 1..604 | 3244 | 100 | Plus |