Clone Sequence Records
BS13831.3prime Sequence
448 bp (447 high quality bases) assembled on 2006-10-13
> BS13831.3prime
ATGGTCTAGAAAGCTTCTACTCAATTTTGTAACCCTCGATTTGAGCAGCA
GCCTTAATCATTTCCACCAACGAATCTGTGGTCTCCTGACCCGTTGGTAT
AATTTGGGCGGCGGGCAATCTAAATCCTGTCCAGAAACTATACCCAGACG
GTCGTAGCTCGTAAGTAAAGGAGTACTTAACGTTGAGCACCCCATAAGCC
CAATCCATACTGGAACCAGCTGCCGGATATATGGCATCGTACACATTTCC
TCCAGTGTACCGAGTTCCATAACGCCGCTTCATTGCACCCACGGCTGTAT
TGAAGATCTGCTCCAACTGCCTATGATTTTCCGGCAGTGCGGATGTGTGT
CCATAGGGATATAGCAACAATTGGGAGAAGGAGTGCAGCGAGAGGAACAT
GAACATGGGTTCCGGCACCGATTTCAAAAACTGAGAAAGAGTCTGAAC
BS13831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-PA | 1275 | CG4017-RA | 844..1275 | 448..17 | 2135 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-RA | 1616 | CG4017-RA | 858..1292 | 448..14 | 2160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9767969..9768403 | 448..14 | 2160 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:21:10 has no hits.
BS13831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for
BS13831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-PA | 844..1275 | 17..448 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:45 Download gff for
BS13831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 858..1292 | 14..448 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:39 Download gff for
BS13831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 858..1292 | 14..448 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:39 Download gff for
BS13831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9767969..9768403 | 14..448 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:45 Download gff for
BS13831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9767969..9768403 | 14..448 | 99 | | Minus |
BS13831.5prime Sequence
464 bp (452 high quality bases) assembled on 2006-10-13
> BS13831.5prime
GAAGTTATCAGTCGACATGAAGCTACTGCTGTTGCTACTGTCGGTTAATA
TTCTTATTTTTTGCTTGGCTGAACGCCAGAGGTTCGACAACTACAAGGTC
TATAGAGTAAGTCCAGTGAAGGCGAATCAACTGGAGGGACTGCGATCTTT
GGAGGCGAATAGCGAGGATGCTCTGGTCCTAAACAATCTGCATCTTGGGC
CCACGGATTTTCTGGTGGCGCCCGACTTCGATGGAACCTTTCTGAAACTC
GTCAAAGATTTGGATCTCTCGCCTGAACTCATCGACGCGAATGCCCAAAC
GAGTCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTG
ATGACTACTCATGGAGTGAATACCACGAACTTAACGACACGCATCGCTGG
ATGCAGAATCTGGTGGGGAAGTATCCGGATGTCGTCAGTGTATTTTGTGG
CGGGTCAAAGTTAC
BS13831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-PA | 1275 | CG4017-RA | 1..447 | 17..464 | 2175 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-RA | 1616 | CG4017-RA | 15..461 | 17..464 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9767072..9767518 | 17..464 | 2175 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:53:17 has no hits.
BS13831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for
BS13831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:20 Download gff for
BS13831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 15..461 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:49 Download gff for
BS13831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 15..461 | 17..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:49 Download gff for
BS13831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9767065..9767518 | 11..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:20 Download gff for
BS13831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9767065..9767518 | 11..464 | 98 | | Plus |
BS13831.complete Sequence
1307 bp assembled on 2009-08-24
GenBank Submission: KX801510
> BS13831.complete
GAAGTTATCAGTCGACATGAAGCTACTGCTGTTGCTACTGTCGGTTAATA
TTCTTATTTTTTGCTTGGCTGAACGCCAGAGGTTCGACAACTACAAGGTC
TATAGAGTAAGTCCAGTGAAGGCGAATCAACTGGAGGGACTGCGATCTTT
GGAGGCGAATAGCGAGGATGCTCTGGTCCTAAACAATCTGCATCTTGGGC
CCACGGATTTTCTGGTGGCGCCCGACTTCGATGGAACCTTTCTGAAACTC
GTCAAAGATTTGGATCTCTCGCCTGAACTCATCGACGCGAATGCCCAAAC
GAGTCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTG
ATGACTACTCATGGAGTGAATACCACGAACTTAACGACACGCATCGCTGG
ATGCAGAATCTGGTGGGGAAGTATCCGGATGTCGTCAGTGTATTTGTGGC
GGGTCAGAGTTACGAGGGTCGTGAGCTGCTGGGCCTGAGGATTAATCATA
ACGATGGAAGAGCTGAGAAGCAATCCATATTCTTGGAGGCCGGAATGCAT
GCTAGGGAATGGATTGGTCCTGCCACGGCCACCTACTTTGCTAACGAGCT
ACTCTCCTCTCAGCAGCAGGAGATCATGAATCTAGCCAGATCCTATGTTT
GGTACATATTGCCCCATGCCAATCCAGACGGTTATGTCTACACCCACAAA
ACGAATCGCATGTGGCGCAAGACAAGGAGTCCGCAGGACAAGAACTGCGT
TGGAACGGATCCCAATCGTAACTGGGACTTCCACTGGCGTGAGGTGGGAG
CCAGTTCTGATCCCTGCTCGGAGTCATATGCTGGACCCAAGGCGTTCTCC
GAACCTGAAGTTCAGACTCTTTCTCAGTTTTTGAAATCGGTGCCGGAACC
CATGTTCATGTTCCTCTCGCTGCACTCCTTCTCCCAATTGTTGCTATATC
CCTATGGACACACATCCGCACTGCCGGAAAATCATAGGCAGTTGGAGCAG
ATCTTCAATACAGCCGTGGGTGCAATGAAGCGGCGTTATGGAACTCGGTA
CACTGGAGGAAATGTGTACGATGCCATATATCCGGCAGCTGGTTCCAGTA
TGGATTGGGCTTATGGGGTGCTCAACGTTAAGTACTCCTTTACCTACGAG
CTACGACCGTCTGGGTATAGTTTCTGGACAGGATTTAGATTGCCCGCCGC
CCAAATTATACCAACGGGTCAGGAGACCACAGATTCGTTGGTGGAAATGA
TTAAGGCTGCTGCTCAAATCGAGGGTTACAAAATTGAGTAGAAGCTTTCT
AGACCAT
BS13831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-RA | 1275 | CG4017-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG17633-RA | 1293 | CG17633-PA | 661..734 | 650..723 | 220 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-RA | 1616 | CG4017-RA | 15..1292 | 17..1294 | 6390 | 100 | Plus |
CG17633-RA | 1350 | CG17633-RA | 685..758 | 650..723 | 220 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9767072..9767758 | 17..703 | 3435 | 100 | Plus |
2L | 23513712 | 2L | 9767812..9768403 | 703..1294 | 2960 | 100 | Plus |
2L | 23513712 | 2L | 9769744..9769817 | 650..723 | 220 | 86.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:37:32 has no hits.
BS13831.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:47 Download gff for
BS13831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 14..1288 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:03 Download gff for
BS13831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 15..1289 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:03 Download gff for
BS13831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4017-RA | 15..1289 | 17..1291 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:03 Download gff for
BS13831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9767072..9767758 | 17..703 | 100 | -> | Plus |
2L | 9767813..9768400 | 704..1291 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:03 Download gff for
BS13831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9767072..9767758 | 17..703 | 100 | -> | Plus |
arm_2L | 9767813..9768400 | 704..1291 | 100 | | Plus |
BS13831.pep Sequence
Translation from 16 to 1290
> BS13831.pep
MKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLEANSE
DALVLNNLHLGPTDFLVAPDFDGTFLKLVKDLDLSPELIDANAQTSLSLD
IEPIADANRRSDDYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYE
GRELLGLRINHNDGRAEKQSIFLEAGMHAREWIGPATATYFANELLSSQQ
QEIMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRSPQDKNCVGTDPN
RNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFMFL
SLHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYTGGNV
YDAIYPAAGSSMDWAYGVLNVKYSFTYELRPSGYSFWTGFRLPAAQIIPT
GQETTDSLVEMIKAAAQIEGYKIE*
BS13831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4017-PA | 424 | CG4017-PA | 1..424 | 1..424 | 2245 | 100 | Plus |
CG17633-PA | 430 | CG17633-PA | 7..419 | 3..411 | 1106 | 50.1 | Plus |
CG14820-PA | 416 | CG14820-PA | 1..414 | 4..419 | 745 | 37.6 | Plus |
CG7025-PA | 429 | CG7025-PA | 25..422 | 19..421 | 732 | 37.6 | Plus |
CG18585-PB | 422 | CG18585-PB | 1..421 | 1..421 | 704 | 36.2 | Plus |