Clone BS13831 Report

Search the DGRC for BS13831

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG4017-RA
Protein status:BS13831.pep: full length peptide match
Sequenced Size:1307

Clone Sequence Records

BS13831.3prime Sequence

448 bp (447 high quality bases) assembled on 2006-10-13

> BS13831.3prime
ATGGTCTAGAAAGCTTCTACTCAATTTTGTAACCCTCGATTTGAGCAGCA
GCCTTAATCATTTCCACCAACGAATCTGTGGTCTCCTGACCCGTTGGTAT
AATTTGGGCGGCGGGCAATCTAAATCCTGTCCAGAAACTATACCCAGACG
GTCGTAGCTCGTAAGTAAAGGAGTACTTAACGTTGAGCACCCCATAAGCC
CAATCCATACTGGAACCAGCTGCCGGATATATGGCATCGTACACATTTCC
TCCAGTGTACCGAGTTCCATAACGCCGCTTCATTGCACCCACGGCTGTAT
TGAAGATCTGCTCCAACTGCCTATGATTTTCCGGCAGTGCGGATGTGTGT
CCATAGGGATATAGCAACAATTGGGAGAAGGAGTGCAGCGAGAGGAACAT
GAACATGGGTTCCGGCACCGATTTCAAAAACTGAGAAAGAGTCTGAAC

BS13831.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-PA 1275 CG4017-RA 844..1275 448..17 2135 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-RA 1616 CG4017-RA 858..1292 448..14 2160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9767969..9768403 448..14 2160 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 16:21:10 has no hits.

BS13831.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for BS13831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-PA 844..1275 17..448 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:45 Download gff for BS13831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 858..1292 14..448 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:39 Download gff for BS13831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 858..1292 14..448 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:39 Download gff for BS13831.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9767969..9768403 14..448 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:45 Download gff for BS13831.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9767969..9768403 14..448 99   Minus

BS13831.5prime Sequence

464 bp (452 high quality bases) assembled on 2006-10-13

> BS13831.5prime
GAAGTTATCAGTCGACATGAAGCTACTGCTGTTGCTACTGTCGGTTAATA
TTCTTATTTTTTGCTTGGCTGAACGCCAGAGGTTCGACAACTACAAGGTC
TATAGAGTAAGTCCAGTGAAGGCGAATCAACTGGAGGGACTGCGATCTTT
GGAGGCGAATAGCGAGGATGCTCTGGTCCTAAACAATCTGCATCTTGGGC
CCACGGATTTTCTGGTGGCGCCCGACTTCGATGGAACCTTTCTGAAACTC
GTCAAAGATTTGGATCTCTCGCCTGAACTCATCGACGCGAATGCCCAAAC
GAGTCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTG
ATGACTACTCATGGAGTGAATACCACGAACTTAACGACACGCATCGCTGG
ATGCAGAATCTGGTGGGGAAGTATCCGGATGTCGTCAGTGTATTTTGTGG
CGGGTCAAAGTTAC

BS13831.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-PA 1275 CG4017-RA 1..447 17..464 2175 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-RA 1616 CG4017-RA 15..461 17..464 2200 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9767072..9767518 17..464 2175 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 12:53:17 has no hits.

BS13831.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:41 Download gff for BS13831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:20 Download gff for BS13831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 15..461 17..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:49 Download gff for BS13831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 15..461 17..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:49 Download gff for BS13831.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9767065..9767518 11..464 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:20 Download gff for BS13831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9767065..9767518 11..464 98   Plus

BS13831.complete Sequence

1307 bp assembled on 2009-08-24

GenBank Submission: KX801510

> BS13831.complete
GAAGTTATCAGTCGACATGAAGCTACTGCTGTTGCTACTGTCGGTTAATA
TTCTTATTTTTTGCTTGGCTGAACGCCAGAGGTTCGACAACTACAAGGTC
TATAGAGTAAGTCCAGTGAAGGCGAATCAACTGGAGGGACTGCGATCTTT
GGAGGCGAATAGCGAGGATGCTCTGGTCCTAAACAATCTGCATCTTGGGC
CCACGGATTTTCTGGTGGCGCCCGACTTCGATGGAACCTTTCTGAAACTC
GTCAAAGATTTGGATCTCTCGCCTGAACTCATCGACGCGAATGCCCAAAC
GAGTCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTG
ATGACTACTCATGGAGTGAATACCACGAACTTAACGACACGCATCGCTGG
ATGCAGAATCTGGTGGGGAAGTATCCGGATGTCGTCAGTGTATTTGTGGC
GGGTCAGAGTTACGAGGGTCGTGAGCTGCTGGGCCTGAGGATTAATCATA
ACGATGGAAGAGCTGAGAAGCAATCCATATTCTTGGAGGCCGGAATGCAT
GCTAGGGAATGGATTGGTCCTGCCACGGCCACCTACTTTGCTAACGAGCT
ACTCTCCTCTCAGCAGCAGGAGATCATGAATCTAGCCAGATCCTATGTTT
GGTACATATTGCCCCATGCCAATCCAGACGGTTATGTCTACACCCACAAA
ACGAATCGCATGTGGCGCAAGACAAGGAGTCCGCAGGACAAGAACTGCGT
TGGAACGGATCCCAATCGTAACTGGGACTTCCACTGGCGTGAGGTGGGAG
CCAGTTCTGATCCCTGCTCGGAGTCATATGCTGGACCCAAGGCGTTCTCC
GAACCTGAAGTTCAGACTCTTTCTCAGTTTTTGAAATCGGTGCCGGAACC
CATGTTCATGTTCCTCTCGCTGCACTCCTTCTCCCAATTGTTGCTATATC
CCTATGGACACACATCCGCACTGCCGGAAAATCATAGGCAGTTGGAGCAG
ATCTTCAATACAGCCGTGGGTGCAATGAAGCGGCGTTATGGAACTCGGTA
CACTGGAGGAAATGTGTACGATGCCATATATCCGGCAGCTGGTTCCAGTA
TGGATTGGGCTTATGGGGTGCTCAACGTTAAGTACTCCTTTACCTACGAG
CTACGACCGTCTGGGTATAGTTTCTGGACAGGATTTAGATTGCCCGCCGC
CCAAATTATACCAACGGGTCAGGAGACCACAGATTCGTTGGTGGAAATGA
TTAAGGCTGCTGCTCAAATCGAGGGTTACAAAATTGAGTAGAAGCTTTCT
AGACCAT

BS13831.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-RA 1275 CG4017-PA 1..1275 17..1291 6375 100 Plus
CG17633-RA 1293 CG17633-PA 661..734 650..723 220 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-RA 1616 CG4017-RA 15..1292 17..1294 6390 100 Plus
CG17633-RA 1350 CG17633-RA 685..758 650..723 220 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9767072..9767758 17..703 3435 100 Plus
2L 23513712 2L 9767812..9768403 703..1294 2960 100 Plus
2L 23513712 2L 9769744..9769817 650..723 220 86.5 Plus
Blast to na_te.dros performed on 2014-11-28 01:37:32 has no hits.

BS13831.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:47 Download gff for BS13831.complete
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 14..1288 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:03 Download gff for BS13831.complete
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 15..1289 17..1291 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:03 Download gff for BS13831.complete
Subject Subject Range Query Range Percent Splice Strand
CG4017-RA 15..1289 17..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:03 Download gff for BS13831.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9767072..9767758 17..703 100 -> Plus
2L 9767813..9768400 704..1291 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:03 Download gff for BS13831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9767072..9767758 17..703 100 -> Plus
arm_2L 9767813..9768400 704..1291 100   Plus

BS13831.pep Sequence

Translation from 16 to 1290

> BS13831.pep
MKLLLLLLSVNILIFCLAERQRFDNYKVYRVSPVKANQLEGLRSLEANSE
DALVLNNLHLGPTDFLVAPDFDGTFLKLVKDLDLSPELIDANAQTSLSLD
IEPIADANRRSDDYSWSEYHELNDTHRWMQNLVGKYPDVVSVFVAGQSYE
GRELLGLRINHNDGRAEKQSIFLEAGMHAREWIGPATATYFANELLSSQQ
QEIMNLARSYVWYILPHANPDGYVYTHKTNRMWRKTRSPQDKNCVGTDPN
RNWDFHWREVGASSDPCSESYAGPKAFSEPEVQTLSQFLKSVPEPMFMFL
SLHSFSQLLLYPYGHTSALPENHRQLEQIFNTAVGAMKRRYGTRYTGGNV
YDAIYPAAGSSMDWAYGVLNVKYSFTYELRPSGYSFWTGFRLPAAQIIPT
GQETTDSLVEMIKAAAQIEGYKIE*

BS13831.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4017-PA 424 CG4017-PA 1..424 1..424 2245 100 Plus
CG17633-PA 430 CG17633-PA 7..419 3..411 1106 50.1 Plus
CG14820-PA 416 CG14820-PA 1..414 4..419 745 37.6 Plus
CG7025-PA 429 CG7025-PA 25..422 19..421 732 37.6 Plus
CG18585-PB 422 CG18585-PB 1..421 1..421 704 36.2 Plus