Clone BS13833 Report

Search the DGRC for BS13833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG5612-RA
Protein status:BS13833.pep: full length peptide match
Sequenced Size:1319

Clone Sequence Records

BS13833.3prime Sequence

599 bp (541 high quality bases) assembled on 2006-10-13

> BS13833.3prime
ATGGTCTAGAAAGCTTCTAGTTATGCAGGATCAGGAAGAGCAGGCCCAGC
AGCGCCGCCATTCCCATGCCCTGGTTCATCTGGCGCAGTGCCGAATTCTT
CTCACTCTCACCCTCACTCTCATCCTCGATCCGCTCGAACATCATCTCCT
CCGGCCGAATGCTCCGCTGCTCCTCGTGCTCCACGCTATCATTGTACACT
CCTGGCGGCGGGGTGGTCCGCTGGCCGGTCAGCAGGAGCAGCTGCAGCGT
CTGCAGCGGCGTCAGGTGCGGAGTGGCATTGCTTTTGGTCCGCGACTCCA
GAATTGCCTTTTGCCACAGCGGCGGCGGCAGGAAGGGCTCATAGGTGGGC
GGCGCTGTGCGCCCCCGATATCCGTAGACGTACATCTGGACAAAAAGGCT
TTTCGAATCGTAGTCGGTGATGACCGCCTTTAGGGTGCCACTCGTATAGT
GACTGTACTCTGCCACCGGCGCTTGGTATTCGGCCTCCGAGATATTTCTA
TTGGCATAGTGATCGAATATAGCAAACCGCACGTATGTTATTAGATTATT
GTCGATGTAGTAGAAAACCACCGAGTGATTGGTTGGCTTTTCCGAATCA

BS13833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 1287 CG5612-RA 705..1287 599..17 2890 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 802..1384 599..17 2900 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27623482..27623976 17..511 2475 100 Plus
3R 32079331 3R 27624046..27624133 512..599 425 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:53:33 has no hits.

BS13833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:42 Download gff for BS13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 706..1287 17..598 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:43 Download gff for BS13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 803..1389 13..598 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:28 Download gff for BS13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 803..1389 13..598 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:28 Download gff for BS13833.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27623477..27623976 13..511 99 <- Plus
3R 27624046..27624132 512..598 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:43 Download gff for BS13833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449199..23449698 13..511 99 <- Plus
arm_3R 23449768..23449854 512..598 98   Plus

BS13833.5prime Sequence

597 bp (540 high quality bases) assembled on 2006-10-13

> BS13833.5prime
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAAGTGATGACAATCTGTCCGAAGAGGACAT

BS13833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 1287 CG5612-RA 1..581 17..597 2855 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 98..678 17..597 2875 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27624314..27624648 597..263 1645 99.4 Minus
3R 32079331 3R 27625669..27625914 262..17 1230 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:21:38 has no hits.

BS13833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:42 Download gff for BS13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 1..581 17..597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:49 Download gff for BS13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 92..678 12..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:43:07 Download gff for BS13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 92..678 12..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:43:07 Download gff for BS13833.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27624314..27624648 263..597 99 <- Minus
3R 27625669..27625920 12..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:49 Download gff for BS13833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23450036..23450370 263..597 99 <- Minus
arm_3R 23451391..23451642 12..262 99   Minus

BS13833.complete Sequence

1319 bp assembled on 2009-12-07

GenBank Submission: KX800942

> BS13833.complete
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAGGTGATGACAATCTGTCCGAGGAGGACATCGA
GAGCTATACGGAAGGTCCATTCGTAACAGACTATTTCGATAAGCCAGACA
AATACATTGAAGTTGGAAAAAGGCAGGCGGGCGATGAACTTCTCTATGAT
TGCTATCAGACATCGCCGGATGATTCGGAAAAGCCAACCAATCACTCGGT
GGTTTTCTACTACATCGACAATAATCTAATAACATACGTGCGGTTTGCTA
TACTCGATCACTATGCCAATAGAAATATCTCGGAGGCCGAATACCAAGCG
CCGGTGGCAGAGTACAGTCACTATACGAGTGGCACCCTAAAGGCGGTCAT
CACCGACTACGATTCGAAAAGCCTTTTTGTCCAGATGTACGTCTACGGAT
ATCGGGGGCGCACAGCGCCGCCCACCTATGAGCCCTTCCTGCCGCCGCCG
CTGTGGCAAAAGGCAATTCTGGAGTCGCGGACCAAAAGCAATGCCACTCC
GCACCTGACGCCGCTGCAGACGCTGCAGCTGCTCCTGCTGACCGGCCAGC
GGACCACCCCGCCGCCAGGAGTGTACAATGATAGCGTGGAGCACGAGGAG
CAGCGGAGCATTCGGCCGGAGGAGATGATGTTCGAGCGGATCGAGGATGA
GAGTGAGGGTGAGAGTGAGAAGAATTCGGCACTGCGCCAGATGAACCAGG
GCATGGGAATGGCGGCGCTGCTGGGCCTGCTCTTCCTGATCCTGCATAAC
TAGAAGCTTTCTAGACCAT

BS13833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1287 CG5612-PA 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 98..1384 17..1303 6435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27623482..27623976 1303..809 2475 100 Minus
3R 32079331 3R 27624230..27624648 681..263 2095 100 Minus
3R 32079331 3R 27625669..27625914 262..17 1230 100 Minus
3R 32079331 3R 27624046..27624174 808..680 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:59:07 has no hits.

BS13833.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:00 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 96..1382 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:54 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 98..1384 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:09 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 96..1382 17..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:19 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 98..1384 17..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:19 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27624231..27624648 263..680 100 <- Minus
3R 27623482..27623976 809..1303 100 <- Minus
3R 27624046..27624173 681..808 100 <- Minus
3R 27625669..27625914 17..262 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:54 Download gff for BS13833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449204..23449698 809..1303 100 <- Minus
arm_3R 23449768..23449895 681..808 100 <- Minus
arm_3R 23449953..23450370 263..680 100 <- Minus
arm_3R 23451391..23451636 17..262 100   Minus

BS13833.pep Sequence

Translation from 16 to 1302

> BS13833.pep
MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL
HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI
IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ
FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG
PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI
DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS
KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL
QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES
EKNSALRQMNQGMGMAALLGLLFLILHN*

BS13833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 428 CG5612-PA 1..428 1..428 2224 100 Plus