Clone Sequence Records
BS13833.3prime Sequence
599 bp (541 high quality bases) assembled on 2006-10-13
> BS13833.3prime
ATGGTCTAGAAAGCTTCTAGTTATGCAGGATCAGGAAGAGCAGGCCCAGC
AGCGCCGCCATTCCCATGCCCTGGTTCATCTGGCGCAGTGCCGAATTCTT
CTCACTCTCACCCTCACTCTCATCCTCGATCCGCTCGAACATCATCTCCT
CCGGCCGAATGCTCCGCTGCTCCTCGTGCTCCACGCTATCATTGTACACT
CCTGGCGGCGGGGTGGTCCGCTGGCCGGTCAGCAGGAGCAGCTGCAGCGT
CTGCAGCGGCGTCAGGTGCGGAGTGGCATTGCTTTTGGTCCGCGACTCCA
GAATTGCCTTTTGCCACAGCGGCGGCGGCAGGAAGGGCTCATAGGTGGGC
GGCGCTGTGCGCCCCCGATATCCGTAGACGTACATCTGGACAAAAAGGCT
TTTCGAATCGTAGTCGGTGATGACCGCCTTTAGGGTGCCACTCGTATAGT
GACTGTACTCTGCCACCGGCGCTTGGTATTCGGCCTCCGAGATATTTCTA
TTGGCATAGTGATCGAATATAGCAAACCGCACGTATGTTATTAGATTATT
GTCGATGTAGTAGAAAACCACCGAGTGATTGGTTGGCTTTTCCGAATCA
BS13833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-PA | 1287 | CG5612-RA | 705..1287 | 599..17 | 2890 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-RA | 1507 | CG5612-RA | 802..1384 | 599..17 | 2900 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27623482..27623976 | 17..511 | 2475 | 100 | Plus |
3R | 32079331 | 3R | 27624046..27624133 | 512..599 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:53:33 has no hits.
BS13833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:42 Download gff for
BS13833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-PA | 706..1287 | 17..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:43 Download gff for
BS13833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 803..1389 | 13..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:28 Download gff for
BS13833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 803..1389 | 13..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:28 Download gff for
BS13833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27623477..27623976 | 13..511 | 99 | <- | Plus |
3R | 27624046..27624132 | 512..598 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:43 Download gff for
BS13833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23449199..23449698 | 13..511 | 99 | <- | Plus |
arm_3R | 23449768..23449854 | 512..598 | 98 | | Plus |
BS13833.5prime Sequence
597 bp (540 high quality bases) assembled on 2006-10-13
> BS13833.5prime
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAAGTGATGACAATCTGTCCGAAGAGGACAT
BS13833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-PA | 1287 | CG5612-RA | 1..581 | 17..597 | 2855 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-RA | 1507 | CG5612-RA | 98..678 | 17..597 | 2875 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27624314..27624648 | 597..263 | 1645 | 99.4 | Minus |
3R | 32079331 | 3R | 27625669..27625914 | 262..17 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:21:38 has no hits.
BS13833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:42 Download gff for
BS13833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-PA | 1..581 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:49:49 Download gff for
BS13833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 92..678 | 12..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:43:07 Download gff for
BS13833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 92..678 | 12..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:43:07 Download gff for
BS13833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27624314..27624648 | 263..597 | 99 | <- | Minus |
3R | 27625669..27625920 | 12..262 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:49:49 Download gff for
BS13833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23450036..23450370 | 263..597 | 99 | <- | Minus |
arm_3R | 23451391..23451642 | 12..262 | 99 | | Minus |
BS13833.complete Sequence
1319 bp assembled on 2009-12-07
GenBank Submission: KX800942
> BS13833.complete
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAGGTGATGACAATCTGTCCGAGGAGGACATCGA
GAGCTATACGGAAGGTCCATTCGTAACAGACTATTTCGATAAGCCAGACA
AATACATTGAAGTTGGAAAAAGGCAGGCGGGCGATGAACTTCTCTATGAT
TGCTATCAGACATCGCCGGATGATTCGGAAAAGCCAACCAATCACTCGGT
GGTTTTCTACTACATCGACAATAATCTAATAACATACGTGCGGTTTGCTA
TACTCGATCACTATGCCAATAGAAATATCTCGGAGGCCGAATACCAAGCG
CCGGTGGCAGAGTACAGTCACTATACGAGTGGCACCCTAAAGGCGGTCAT
CACCGACTACGATTCGAAAAGCCTTTTTGTCCAGATGTACGTCTACGGAT
ATCGGGGGCGCACAGCGCCGCCCACCTATGAGCCCTTCCTGCCGCCGCCG
CTGTGGCAAAAGGCAATTCTGGAGTCGCGGACCAAAAGCAATGCCACTCC
GCACCTGACGCCGCTGCAGACGCTGCAGCTGCTCCTGCTGACCGGCCAGC
GGACCACCCCGCCGCCAGGAGTGTACAATGATAGCGTGGAGCACGAGGAG
CAGCGGAGCATTCGGCCGGAGGAGATGATGTTCGAGCGGATCGAGGATGA
GAGTGAGGGTGAGAGTGAGAAGAATTCGGCACTGCGCCAGATGAACCAGG
GCATGGGAATGGCGGCGCTGCTGGGCCTGCTCTTCCTGATCCTGCATAAC
TAGAAGCTTTCTAGACCAT
BS13833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-RA | 1287 | CG5612-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-RA | 1507 | CG5612-RA | 98..1384 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27623482..27623976 | 1303..809 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 27624230..27624648 | 681..263 | 2095 | 100 | Minus |
3R | 32079331 | 3R | 27625669..27625914 | 262..17 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 27624046..27624174 | 808..680 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:59:07 has no hits.
BS13833.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:00 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 96..1382 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:54 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 98..1384 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:09 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 96..1382 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:19 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5612-RA | 98..1384 | 17..1303 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:19 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27624231..27624648 | 263..680 | 100 | <- | Minus |
3R | 27623482..27623976 | 809..1303 | 100 | <- | Minus |
3R | 27624046..27624173 | 681..808 | 100 | <- | Minus |
3R | 27625669..27625914 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:54 Download gff for
BS13833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23449204..23449698 | 809..1303 | 100 | <- | Minus |
arm_3R | 23449768..23449895 | 681..808 | 100 | <- | Minus |
arm_3R | 23449953..23450370 | 263..680 | 100 | <- | Minus |
arm_3R | 23451391..23451636 | 17..262 | 100 | | Minus |
BS13833.pep Sequence
Translation from 16 to 1302
> BS13833.pep
MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL
HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI
IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ
FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG
PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI
DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS
KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL
QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES
EKNSALRQMNQGMGMAALLGLLFLILHN*
BS13833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5612-PA | 428 | CG5612-PA | 1..428 | 1..428 | 2224 | 100 | Plus |