Clone BS13835 Report

Search the DGRC for BS13835

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptBet1-RA
Protein status:BS13835.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13835.3prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS13835.3prime
ATGGTCTAGAAAGCTTCTACTTAAACTTTAGGGTTATCCAGAGGATTAAG
AACACGACGAGGATGAAGAGGAACATGTAGCACATTTGGCGAGCACCACC
GCCCTGTTTGGCCAGTCGCACCACCCGCGTCATCGCGTTGCCCAGAAATC
CACTCGTCCGGTCCATGTCGTCGTCGATGCCGCGCAGCAGCTTGTCCTGG
TAGCGCACCTCATTGCCTATATCGATGGTGAGGGACTTCAGGGCCCCGAT
CTTCTGCTTCAACTCCTCCGCCGCCTGCTCGTTTTCCGCCTCCAAGGCGT
CGTGGCTCGCAGGATGGGGCCCTGAAGGGTGCTGGTTTAGGGGCTGGTAC
GGGTAGTTGTTGCGGCGCATGTCGACTGATAACT

BS13835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14084-PA 354 CG14084-RA 1..354 370..17 1770 100 Minus
CG14084-PB 354 CG14084-RB 1..354 370..17 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Bet1-RB 987 CG14084-RB 300..653 370..17 1770 100 Minus
Bet1-RA 656 CG14084-RA 252..605 370..17 1770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19261750..19262103 370..17 1770 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:47:29 has no hits.

BS13835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:44 Download gff for BS13835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14084-PB 1..354 17..370 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:19 Download gff for BS13835.3prime
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 248..610 11..378 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:01 Download gff for BS13835.3prime
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 248..610 11..378 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:01 Download gff for BS13835.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19261746..19262108 11..378 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:19 Download gff for BS13835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19254846..19255208 11..378 98   Minus

BS13835.5prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS13835.5prime
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGTAGAAGCTTTCTAGACC

BS13835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14084-PA 354 CG14084-RA 1..354 17..370 1770 100 Plus
CG14084-PB 354 CG14084-RB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Bet1-RB 987 CG14084-RB 300..653 17..370 1770 100 Plus
Bet1-RA 656 CG14084-RA 252..605 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19261750..19262103 17..370 1770 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:28:52 has no hits.

BS13835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:45 Download gff for BS13835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14084-PB 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:20 Download gff for BS13835.5prime
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 248..610 9..376 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:16 Download gff for BS13835.5prime
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 248..610 9..376 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:16 Download gff for BS13835.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19261746..19262108 9..376 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:20 Download gff for BS13835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19254846..19255208 9..376 98   Plus

BS13835.complete Sequence

386 bp assembled on 2006-11-01

GenBank Submission: FJ637536

> BS13835.complete
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGTAGAAGCTTTCTAGACCAT

BS13835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Bet1-RB 354 CG14084-PB 1..354 17..370 1770 100 Plus
Bet1-RA 354 CG14084-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Bet1-RB 987 CG14084-RB 300..653 17..370 1770 100 Plus
Bet1-RA 656 CG14084-RA 252..605 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19261750..19262103 17..370 1770 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:15:19 has no hits.

BS13835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:18 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
CG14084-RB 1..354 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:55 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
CG14084-RB 273..635 9..376 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:58 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 252..605 17..370 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:18 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
CG14084-RB 273..635 9..376 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:38 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
Bet1-RA 252..605 17..370 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:38 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19261750..19262103 17..370 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:58 Download gff for BS13835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19254850..19255203 17..370 100   Plus

BS13835.pep Sequence

Translation from 16 to 369

> BS13835.pep
MRRNNYPYQPLNQHPSGPHPASHDALEAENEQAAEELKQKIGALKSLTID
IGNEVRYQDKLLRGIDDDMDRTSGFLGNAMTRVVRLAKQGGGARQMCYMF
LFILVVFLILWITLKFK*

BS13835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Bet1-PB 117 CG14084-PB 1..117 1..117 610 100 Plus
Bet1-PA 117 CG14084-PA 1..117 1..117 610 100 Plus