Clone Sequence Records
BS13835.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS13835.3prime
ATGGTCTAGAAAGCTTCTACTTAAACTTTAGGGTTATCCAGAGGATTAAG
AACACGACGAGGATGAAGAGGAACATGTAGCACATTTGGCGAGCACCACC
GCCCTGTTTGGCCAGTCGCACCACCCGCGTCATCGCGTTGCCCAGAAATC
CACTCGTCCGGTCCATGTCGTCGTCGATGCCGCGCAGCAGCTTGTCCTGG
TAGCGCACCTCATTGCCTATATCGATGGTGAGGGACTTCAGGGCCCCGAT
CTTCTGCTTCAACTCCTCCGCCGCCTGCTCGTTTTCCGCCTCCAAGGCGT
CGTGGCTCGCAGGATGGGGCCCTGAAGGGTGCTGGTTTAGGGGCTGGTAC
GGGTAGTTGTTGCGGCGCATGTCGACTGATAACT
BS13835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14084-PA | 354 | CG14084-RA | 1..354 | 370..17 | 1770 | 100 | Minus |
CG14084-PB | 354 | CG14084-RB | 1..354 | 370..17 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet1-RB | 987 | CG14084-RB | 300..653 | 370..17 | 1770 | 100 | Minus |
Bet1-RA | 656 | CG14084-RA | 252..605 | 370..17 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19261750..19262103 | 370..17 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:47:29 has no hits.
BS13835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:44 Download gff for
BS13835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14084-PB | 1..354 | 17..370 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:19 Download gff for
BS13835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 248..610 | 11..378 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:01 Download gff for
BS13835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 248..610 | 11..378 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:01 Download gff for
BS13835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19261746..19262108 | 11..378 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:19 Download gff for
BS13835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19254846..19255208 | 11..378 | 98 | | Minus |
BS13835.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS13835.5prime
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGTAGAAGCTTTCTAGACC
BS13835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14084-PA | 354 | CG14084-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG14084-PB | 354 | CG14084-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet1-RB | 987 | CG14084-RB | 300..653 | 17..370 | 1770 | 100 | Plus |
Bet1-RA | 656 | CG14084-RA | 252..605 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19261750..19262103 | 17..370 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:28:52 has no hits.
BS13835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:45 Download gff for
BS13835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14084-PB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:20 Download gff for
BS13835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 248..610 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:16 Download gff for
BS13835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 248..610 | 9..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:16 Download gff for
BS13835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19261746..19262108 | 9..376 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:20 Download gff for
BS13835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19254846..19255208 | 9..376 | 98 | | Plus |
BS13835.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ637536
> BS13835.complete
GAAGTTATCAGTCGACATGCGCCGCAACAACTACCCGTACCAGCCCCTAA
ACCAGCACCCTTCAGGGCCCCATCCTGCGAGCCACGACGCCTTGGAGGCG
GAAAACGAGCAGGCGGCGGAGGAGTTGAAGCAGAAGATCGGGGCCCTGAA
GTCCCTCACCATCGATATAGGCAATGAGGTGCGCTACCAGGACAAGCTGC
TGCGCGGCATCGACGACGACATGGACCGGACGAGTGGATTTCTGGGCAAC
GCGATGACGCGGGTGGTGCGACTGGCCAAACAGGGCGGTGGTGCTCGCCA
AATGTGCTACATGTTCCTCTTCATCCTCGTCGTGTTCTTAATCCTCTGGA
TAACCCTAAAGTTTAAGTAGAAGCTTTCTAGACCAT
BS13835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet1-RB | 354 | CG14084-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
Bet1-RA | 354 | CG14084-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet1-RB | 987 | CG14084-RB | 300..653 | 17..370 | 1770 | 100 | Plus |
Bet1-RA | 656 | CG14084-RA | 252..605 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19261750..19262103 | 17..370 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:15:19 has no hits.
BS13835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:18 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14084-RB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:55 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14084-RB | 273..635 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:58 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 252..605 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:18 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14084-RB | 273..635 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:38 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bet1-RA | 252..605 | 17..370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:38 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19261750..19262103 | 17..370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:58 Download gff for
BS13835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19254850..19255203 | 17..370 | 100 | | Plus |
BS13835.pep Sequence
Translation from 16 to 369
> BS13835.pep
MRRNNYPYQPLNQHPSGPHPASHDALEAENEQAAEELKQKIGALKSLTID
IGNEVRYQDKLLRGIDDDMDRTSGFLGNAMTRVVRLAKQGGGARQMCYMF
LFILVVFLILWITLKFK*
BS13835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bet1-PB | 117 | CG14084-PB | 1..117 | 1..117 | 610 | 100 | Plus |
Bet1-PA | 117 | CG14084-PA | 1..117 | 1..117 | 610 | 100 | Plus |