Clone Sequence Records
BS13837.3prime Sequence
551 bp (484 high quality bases) assembled on 2006-10-13
> BS13837.3prime
ATGGTCTAGAAAGCTTTTATAAGTTCAGGAAGCTATTGCCCAGGAATCCC
AGCATTATGGTGGACATGGCAATCGGGGCGAGTTGCACATTCGAGGCCGT
ACTGTTGCCGGCCAGTATCTCGGCCCTCTTTCGCATGCGTTCCTGGTACA
GTTTGTCCTCGCCGGGCGGATCCAAGCACTCGAACTCACAGCAACGTTCG
CCAACTCGAAAGTTTTTGCAAAAATAGGGTGGATCACAGTAGATGGCCTT
GCACCAGAGTGGTTCGGAGTGATAGCAGACGCAAAGGCTACAGACTCCTG
GTCCAGGCACATAGAGCATTCCGTGGTTCACCTTGTTGCCCTGAAAGTCA
ACACAGTCCTCCTCGAGTGCAGCTGTAAAGGGGCTGAGGCAGCCCAGCAG
GCATAGGGCCAAAATCAGCTGGGCGAGATAGTCAGTTGGCAGCCAAAGCA
ACGACGTCATTGGTGGCGGCCACGCCCCCAGTCGACCGGCCGCCTTAAGG
CGTTGCAAGTACGATTGTTGCTGTTGCTTTTGCTTTTGCTGCTGCATGTT
T
BS13837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-PB | 702 | CG32647-RB | 168..702 | 551..17 | 2675 | 100 | Minus |
| CG32647-PA | 702 | CG32647-RA | 168..702 | 551..17 | 2675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-RD | 5943 | CG32647-RD | 580..1114 | 551..17 | 2675 | 100 | Minus |
| CG32647-RC | 4267 | CG32647-RC | 641..1175 | 551..17 | 2675 | 100 | Minus |
| CG32647-RA | 1215 | CG32647-RA | 580..1114 | 551..17 | 2675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12783089..12783267 | 373..551 | 895 | 100 | Plus |
| X | 23542271 | X | 12777077..12777229 | 224..376 | 765 | 100 | Plus |
| X | 23542271 | X | 12776673..12776800 | 17..144 | 640 | 100 | Plus |
| X | 23542271 | X | 12776864..12776949 | 138..223 | 415 | 98.8 | Plus |
Blast to na_te.dros performed 2015-02-11 15:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6842 | 550..502 | 143 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6767 | 551..502 | 133 | 74 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2421 | 545..502 | 130 | 77.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6788 | 544..502 | 125 | 76.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6809 | 544..502 | 125 | 76.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2396 | 544..515 | 123 | 90 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2342 | 550..515 | 114 | 83.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2687 | 544..479 | 114 | 63.6 | Minus |
| TART-A | 13424 | TART-A 13424bp | 10177..10229 | 550..497 | 114 | 70.4 | Minus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1540..1564 | 544..520 | 107 | 92 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3283..3314 | 546..515 | 106 | 81.2 | Minus |
BS13837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:45 Download gff for
BS13837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-PA | 168..702 | 17..551 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:25 Download gff for
BS13837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RB | 534..1071 | 11..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:18 Download gff for
BS13837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RA | 580..1117 | 11..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:18 Download gff for
BS13837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12783089..12783267 | 373..551 | 100 | | Plus |
| X | 12776670..12776798 | 11..142 | 97 | <- | Plus |
| X | 12776869..12776949 | 143..223 | 100 | <- | Plus |
| X | 12777077..12777225 | 224..372 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:25 Download gff for
BS13837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12670703..12670831 | 11..142 | 97 | <- | Plus |
| arm_X | 12670902..12670982 | 143..223 | 100 | <- | Plus |
| arm_X | 12671110..12671258 | 224..372 | 100 | <- | Plus |
| arm_X | 12677122..12677300 | 373..551 | 100 | | Plus |
BS13837.5prime Sequence
545 bp (395 high quality bases) assembled on 2006-10-13
> BS13837.5prime
GAAGTTATCAGTCGACATGACAAAGGCAGCAGCAGCAGCAGCAACAGCAA
CAGCAACAACAACAGCGGCAGCAACACCAATCAAAACAGCGTCAGCAACC
AAAGCAATAACAATCAATGGGCCCCAGACGACATGGCGACGTCAACGAGG
CTGCTGCACAACAACAACAACAGCAGCAATACGAAACATGCATGAGCAAA
AGCAAAAGCAACATGAACAATCGTACTTGCAACGCCTTAGAGCGGCCGGT
CGACTGGAGGCGTGGCCGCCACCAGTGACGTCGTTGCTTTGGCTGCCAAC
TGACTATCTCGCCCAGACTGATTTTGGCCCTATGCCTGCTGGGCTGCCTC
AGCCCCTTTACAGCTGCACTCGAGGAGGACTGTGTTGACTTTCAGGGCGA
CAAGGTGAACCACGGAATGCTCTATGTGCCTGGACCAGGAGTCTGTATCC
TTTGCGTCTGCTATCACTCCGAACCACTCTGGTGCAAGGCCATCTACTGT
GATCCACCCTATTTTTGCAAAAACTTTCGAGTTGGCGAACGTTGC
BS13837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-PB | 702 | CG32647-RB | 1..528 | 17..545 | 2280 | 97.3 | Plus |
| CG32647-PA | 702 | CG32647-RA | 1..528 | 17..545 | 2280 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-RD | 5943 | CG32647-RD | 413..940 | 17..545 | 2425 | 97.4 | Plus |
| CG32647-RC | 4267 | CG32647-RC | 474..1001 | 17..545 | 2425 | 97.4 | Plus |
| CG32647-RA | 1215 | CG32647-RA | 413..940 | 17..545 | 2425 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12783089..12783434 | 363..17 | 1520 | 96.5 | Minus |
| X | 23542271 | X | 12777077..12777229 | 512..360 | 735 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:16:04 has no hits.
BS13837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:46 Download gff for
BS13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-PA | 1..528 | 17..545 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:33 Download gff for
BS13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RB | 363..894 | 14..545 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:51 Download gff for
BS13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RA | 409..940 | 14..545 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:51 Download gff for
BS13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12776917..12776949 | 513..545 | 100 | <- | Minus |
| X | 12777077..12777225 | 364..512 | 98 | <- | Minus |
| X | 12783089..12783438 | 14..363 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:33 Download gff for
BS13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12670950..12670982 | 513..545 | 100 | <- | Minus |
| arm_X | 12671110..12671258 | 364..512 | 98 | <- | Minus |
| arm_X | 12677122..12677471 | 14..363 | 96 | | Minus |
BS13837.complete Sequence
734 bp assembled on 2010-07-02
GenBank Submission: KX804213
> BS13837.complete
GAAGTTATCAGTCGACATGACAAAGGCAGCAGCAGCAGCAGCAACAGCAA
CAGCAACAACAACAGCGGCAGCAACACCAATCAAAACAGCAGCAGCAACC
AAAGCAATAACAATCAATGGGCCCCAAACGACATGGCGACGTCAACGAGG
CTGCTGCACAACAACAACAACAGCAGCAATACGAAACATGCAGCAGCAAA
AGCAAAAGCAACAGCAACAATCGTACTTGCAACGCCTTAAGGCGGCCGGT
CGACTGGGGGCGTGGCCGCCACCAATGACGTCGTTGCTTTGGCTGCCAAC
TGACTATCTCGCCCAGCTGATTTTGGCCCTATGCCTGCTGGGCTGCCTCA
GCCCCTTTACAGCTGCACTCGAGGAGGACTGTGTTGACTTTCAGGGCAAC
AAGGTGAACCACGGAATGCTCTATGTGCCTGGACCAGGAGTCTGTAGCCT
TTGCGTCTGCTATCACTCCGAACCACTCTGGTGCAAGGCCATCTACTGTG
ATCCACCCTATTTTTGCAAAAACTTTCGAGTTGGCGAACGTTGCTGTGAG
TTCGAGTGCTTGGATCCGCCCGGCGAGGACAAACTGTACCAGGAACGCAT
GCGAAAGAGGGCCGAGATACTGGCCGGCAACAGTACGGCCTCGAATGTGC
AACTCGCCCCGATTGCCATGTCCACCATAATGCTGGGATTCCTGGGCAAT
AGCTTCCTGAACTTATAAAAGCTTTCTAGACCAT
BS13837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-RD | 702 | CG32647-PD | 1..702 | 17..718 | 3510 | 100 | Plus |
| CG32647-RC | 702 | CG32647-PC | 1..702 | 17..718 | 3510 | 100 | Plus |
| CG32647-RA | 702 | CG32647-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-RD | 5943 | CG32647-RD | 413..1114 | 17..718 | 3510 | 100 | Plus |
| CG32647-RC | 4267 | CG32647-RC | 474..1175 | 17..718 | 3510 | 100 | Plus |
| CG32647-RA | 1215 | CG32647-RA | 413..1114 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12783089..12783434 | 362..17 | 1730 | 100 | Minus |
| X | 23542271 | X | 12777077..12777229 | 511..359 | 765 | 100 | Minus |
| X | 23542271 | X | 12776673..12776800 | 718..591 | 640 | 100 | Minus |
| X | 23542271 | X | 12776864..12776949 | 597..512 | 415 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:34 has no hits.
BS13837.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:57 Download gff for
BS13837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RA | 413..1112 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:27 Download gff for
BS13837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RB | 367..1066 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:31 Download gff for
BS13837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32647-RA | 413..1112 | 17..716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:31 Download gff for
BS13837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12776675..12776798 | 593..716 | 100 | <- | Minus |
| X | 12776869..12776949 | 512..592 | 100 | <- | Minus |
| X | 12777077..12777225 | 363..511 | 100 | <- | Minus |
| X | 12783089..12783434 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:27 Download gff for
BS13837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12670708..12670831 | 593..716 | 100 | <- | Minus |
| arm_X | 12670902..12670982 | 512..592 | 100 | <- | Minus |
| arm_X | 12671110..12671258 | 363..511 | 100 | <- | Minus |
| arm_X | 12677122..12677467 | 17..362 | 100 | | Minus |
BS13837.pep Sequence
Translation from 16 to 717
> BS13837.pep
MTKAAAAAATATATTTAAATPIKTAAATKAITINGPQTTWRRQRGCCTTT
TTAAIRNMQQQKQKQQQQSYLQRLKAAGRLGAWPPPMTSLLWLPTDYLAQ
LILALCLLGCLSPFTAALEEDCVDFQGNKVNHGMLYVPGPGVCSLCVCYH
SEPLWCKAIYCDPPYFCKNFRVGERCCEFECLDPPGEDKLYQERMRKRAE
ILAGNSTASNVQLAPIAMSTIMLGFLGNSFLNL*
BS13837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32647-PD | 233 | CG32647-PD | 1..233 | 1..233 | 1251 | 100 | Plus |
| CG32647-PC | 233 | CG32647-PC | 1..233 | 1..233 | 1251 | 100 | Plus |
| CG32647-PA | 233 | CG32647-PA | 1..233 | 1..233 | 1251 | 100 | Plus |
| CG32647-PB | 233 | CG32647-PB | 1..233 | 1..233 | 1251 | 100 | Plus |
| CG42404-PF | 105 | CG42404-PF | 29..98 | 122..188 | 147 | 40 | Plus |
