Clone BS13838 Report

Search the DGRC for BS13838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptt-RA
Protein status:BS13838.pep: full length peptide match
Sequenced Size:1196

Clone Sequence Records

BS13838.complete Sequence

1196 bp assembled on 2009-12-07

GenBank Submission: KX802330

> BS13838.complete
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGA
TGGCACCATCGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGAG
GTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCG
GCAGGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATGC
AAACATTTGGAGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCCAC
ATGCTGGGCGACGTGTCCGGCGGAGTTTACTGCGTCTGGCGGGAGAACAA
CAGCTGCGACGAGGTGGTCAAGACCATTGCCGTTGGCATCTTCGATCTCA
GTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGAGCCA
CACTGCCGCCTGCCGCTGCTCTACAAGTAGAAGCTTTCTAGACCAT

BS13838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1164 CG12120-PB 1..1164 17..1180 5820 100 Plus
t-RA 1164 CG12120-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 232..1396 17..1181 5825 100 Plus
t-RA 1975 CG12120-RA 232..1396 17..1181 5825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218234..9218529 1181..886 1480 100 Minus
X 23542271 X 9218953..9219187 647..413 1175 100 Minus
X 23542271 X 9218773..9218894 769..648 610 100 Minus
X 23542271 X 9218588..9218704 885..769 585 100 Minus
X 23542271 X 9219253..9219365 412..300 565 100 Minus
X 23542271 X 9221210..9221313 301..198 520 100 Minus
X 23542271 X 9221415..9221510 198..103 480 100 Minus
X 23542271 X 9222939..9223026 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:48:51 has no hits.

BS13838.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:40 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1395 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:34 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1395 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:41 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1395 17..1180 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:27 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..1395 17..1180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:27 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
X 9218235..9218529 886..1180 100 <- Minus
X 9218588..9218704 769..885 100 <- Minus
X 9218774..9218894 648..768 100 <- Minus
X 9218953..9219187 413..647 100 <- Minus
X 9219253..9219363 302..412 100 <- Minus
X 9221210..9221313 198..301 100 <- Minus
X 9221416..9221509 104..197 100 <- Minus
X 9222940..9223026 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:34 Download gff for BS13838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9113286..9113396 302..412 100 <- Minus
arm_X 9115243..9115346 198..301 100 <- Minus
arm_X 9115449..9115542 104..197 100 <- Minus
arm_X 9116973..9117059 17..103 100   Minus
arm_X 9112268..9112562 886..1180 100 <- Minus
arm_X 9112621..9112737 769..885 100 <- Minus
arm_X 9112807..9112927 648..768 100 <- Minus
arm_X 9112986..9113220 413..647 100 <- Minus

BS13838.3prime Sequence

565 bp (529 high quality bases) assembled on 2006-10-13

> BS13838.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGAGCAGCGGCAGGCGGCAGTGTGGC
TCCGTCTCGCTGGGATTGTCGGAATACAGGGAAATGGTCCTGGCACTGAG
ATCGAAGATGCCAACGGCAATGGTCTTGACCACCTCGTCGCAGCTGTTGT
TCTCCCGCCAGACGCAGTAAACTCCGCCGGACACGTCGCCCAGCATGTGG
CGCACATCCTGCTCGCTCATCGGCGGATTGTACGCTCCAAATGTTTGCAT
CCTGGAGATGCTCGAGCTAATCATCAGATCGTTGGCCTGATCCTGCCGAA
TGCGATCGAATTGATTGACATGGTAGTTGTGCTCGCCCAGCGGCACCTCC
TTGATATTCAAATGAGACTCATTCTTGCGGTCCGGCGATGGTGCCATCTC
CACATTGTAGCACATTTGGCGGGGATCCGCCAGGAAGGTGAAATTGATGG
AACAGGCATCCGCTGCACCCACTCCCGCATCCTTGAGCACGCGGAAAGCA
TCGTCCACGTTGCTGGTGGCCAACAGAGCCCGGGTGATGAAGTGTCGCGG
TGTCTTGCCGCTGCC

BS13838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12120-PA 1164 CG12120-RA 617..1164 564..17 2715 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 848..1396 564..16 2730 99.8 Minus
t-RA 1975 CG12120-RA 848..1396 564..16 2730 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218234..9218529 16..311 1480 100 Plus
X 23542271 X 9218773..9218894 428..549 595 99.2 Plus
X 23542271 X 9218588..9218704 312..428 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:19:00 has no hits.

BS13838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:46 Download gff for BS13838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 615..1164 17..565 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:33 Download gff for BS13838.3prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 846..1399 13..565 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:26 Download gff for BS13838.3prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 846..1399 13..565 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:26 Download gff for BS13838.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9218231..9218529 13..311 99 <- Plus
X 9218588..9218704 312..428 100 <- Plus
X 9218774..9218894 429..549 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:33 Download gff for BS13838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112264..9112562 13..311 99 <- Plus
arm_X 9112621..9112737 312..428 100 <- Plus
arm_X 9112807..9112927 429..549 99 <- Plus

BS13838.5prime Sequence

661 bp (563 high quality bases) assembled on 2006-10-13

> BS13838.5prime
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAAGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGGTCT
TCAGCATCCAACACCATCAGTGCGGAGCTCTTGCGCAACGGCAAGACACC
GCGAAACTTCA

BS13838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12120-PA 1164 CG12120-RA 1..643 17..661 3070 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 232..874 17..661 3130 99.2 Plus
t-RA 1975 CG12120-RA 232..874 17..661 3130 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218953..9219187 649..413 1055 98.3 Minus
X 23542271 X 9219253..9219365 412..300 565 100 Minus
X 23542271 X 9221210..9221313 301..198 520 100 Minus
X 23542271 X 9221415..9221510 198..103 480 100 Minus
X 23542271 X 9222939..9223026 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:02:08 has no hits.

BS13838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:47 Download gff for BS13838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12120-PA 1..642 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:08:54 Download gff for BS13838.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..873 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:04 Download gff for BS13838.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 232..873 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:04 Download gff for BS13838.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9218949..9219187 413..655 97 <- Minus
X 9219253..9219363 302..412 100 <- Minus
X 9221210..9221313 198..301 100 <- Minus
X 9221416..9221509 104..197 100 <- Minus
X 9222940..9223026 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:08:54 Download gff for BS13838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112982..9113220 413..655 97 <- Minus
arm_X 9113286..9113396 302..412 100 <- Minus
arm_X 9115243..9115346 198..301 100 <- Minus
arm_X 9115449..9115542 104..197 100 <- Minus
arm_X 9116973..9117059 17..103 100   Minus

BS13838.pep Sequence

Translation from 16 to 1179

> BS13838.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*

BS13838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
t-PB 387 CG12120-PB 1..387 1..387 2052 100 Plus
t-PA 387 CG12120-PA 1..387 1..387 2052 100 Plus