Clone Sequence Records
BS13838.complete Sequence
1196 bp assembled on 2009-12-07
GenBank Submission: KX802330
> BS13838.complete
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTT
CAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGC
GACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCC
TTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCAT
CAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGA
TGGCACCATCGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGAG
GTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCG
GCAGGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATGC
AAACATTTGGAGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCCAC
ATGCTGGGCGACGTGTCCGGCGGAGTTTACTGCGTCTGGCGGGAGAACAA
CAGCTGCGACGAGGTGGTCAAGACCATTGCCGTTGGCATCTTCGATCTCA
GTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGAGCCA
CACTGCCGCCTGCCGCTGCTCTACAAGTAGAAGCTTTCTAGACCAT
BS13838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1164 | CG12120-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
t-RA | 1164 | CG12120-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 232..1396 | 17..1181 | 5825 | 100 | Plus |
t-RA | 1975 | CG12120-RA | 232..1396 | 17..1181 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218234..9218529 | 1181..886 | 1480 | 100 | Minus |
X | 23542271 | X | 9218953..9219187 | 647..413 | 1175 | 100 | Minus |
X | 23542271 | X | 9218773..9218894 | 769..648 | 610 | 100 | Minus |
X | 23542271 | X | 9218588..9218704 | 885..769 | 585 | 100 | Minus |
X | 23542271 | X | 9219253..9219365 | 412..300 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 301..198 | 520 | 100 | Minus |
X | 23542271 | X | 9221415..9221510 | 198..103 | 480 | 100 | Minus |
X | 23542271 | X | 9222939..9223026 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:48:51 has no hits.
BS13838.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:40 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1395 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:34 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1395 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:41 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1395 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:27 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..1395 | 17..1180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:27 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9218235..9218529 | 886..1180 | 100 | <- | Minus |
X | 9218588..9218704 | 769..885 | 100 | <- | Minus |
X | 9218774..9218894 | 648..768 | 100 | <- | Minus |
X | 9218953..9219187 | 413..647 | 100 | <- | Minus |
X | 9219253..9219363 | 302..412 | 100 | <- | Minus |
X | 9221210..9221313 | 198..301 | 100 | <- | Minus |
X | 9221416..9221509 | 104..197 | 100 | <- | Minus |
X | 9222940..9223026 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:34 Download gff for
BS13838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9113286..9113396 | 302..412 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 198..301 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 104..197 | 100 | <- | Minus |
arm_X | 9116973..9117059 | 17..103 | 100 | | Minus |
arm_X | 9112268..9112562 | 886..1180 | 100 | <- | Minus |
arm_X | 9112621..9112737 | 769..885 | 100 | <- | Minus |
arm_X | 9112807..9112927 | 648..768 | 100 | <- | Minus |
arm_X | 9112986..9113220 | 413..647 | 100 | <- | Minus |
BS13838.3prime Sequence
565 bp (529 high quality bases) assembled on 2006-10-13
> BS13838.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGAGCAGCGGCAGGCGGCAGTGTGGC
TCCGTCTCGCTGGGATTGTCGGAATACAGGGAAATGGTCCTGGCACTGAG
ATCGAAGATGCCAACGGCAATGGTCTTGACCACCTCGTCGCAGCTGTTGT
TCTCCCGCCAGACGCAGTAAACTCCGCCGGACACGTCGCCCAGCATGTGG
CGCACATCCTGCTCGCTCATCGGCGGATTGTACGCTCCAAATGTTTGCAT
CCTGGAGATGCTCGAGCTAATCATCAGATCGTTGGCCTGATCCTGCCGAA
TGCGATCGAATTGATTGACATGGTAGTTGTGCTCGCCCAGCGGCACCTCC
TTGATATTCAAATGAGACTCATTCTTGCGGTCCGGCGATGGTGCCATCTC
CACATTGTAGCACATTTGGCGGGGATCCGCCAGGAAGGTGAAATTGATGG
AACAGGCATCCGCTGCACCCACTCCCGCATCCTTGAGCACGCGGAAAGCA
TCGTCCACGTTGCTGGTGGCCAACAGAGCCCGGGTGATGAAGTGTCGCGG
TGTCTTGCCGCTGCC
BS13838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12120-PA | 1164 | CG12120-RA | 617..1164 | 564..17 | 2715 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 848..1396 | 564..16 | 2730 | 99.8 | Minus |
t-RA | 1975 | CG12120-RA | 848..1396 | 564..16 | 2730 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218234..9218529 | 16..311 | 1480 | 100 | Plus |
X | 23542271 | X | 9218773..9218894 | 428..549 | 595 | 99.2 | Plus |
X | 23542271 | X | 9218588..9218704 | 312..428 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:19:00 has no hits.
BS13838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:46 Download gff for
BS13838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 615..1164 | 17..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:33 Download gff for
BS13838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 846..1399 | 13..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:26 Download gff for
BS13838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 846..1399 | 13..565 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:26 Download gff for
BS13838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9218231..9218529 | 13..311 | 99 | <- | Plus |
X | 9218588..9218704 | 312..428 | 100 | <- | Plus |
X | 9218774..9218894 | 429..549 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:33 Download gff for
BS13838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112264..9112562 | 13..311 | 99 | <- | Plus |
arm_X | 9112621..9112737 | 312..428 | 100 | <- | Plus |
arm_X | 9112807..9112927 | 429..549 | 99 | <- | Plus |
BS13838.5prime Sequence
661 bp (563 high quality bases) assembled on 2006-10-13
> BS13838.5prime
GAAGTTATCAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGG
CGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGAT
ATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAA
GCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGC
AGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATAT
GTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAA
GCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACC
AACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAAC
CAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGAC
CCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGC
AGGGCAAGTACAACGTTAAGGAAGAGCACTTCATGTCCCTCTGCTACGCT
GGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGGTCT
TCAGCATCCAACACCATCAGTGCGGAGCTCTTGCGCAACGGCAAGACACC
GCGAAACTTCA
BS13838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12120-PA | 1164 | CG12120-RA | 1..643 | 17..661 | 3070 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 232..874 | 17..661 | 3130 | 99.2 | Plus |
t-RA | 1975 | CG12120-RA | 232..874 | 17..661 | 3130 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218953..9219187 | 649..413 | 1055 | 98.3 | Minus |
X | 23542271 | X | 9219253..9219365 | 412..300 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 301..198 | 520 | 100 | Minus |
X | 23542271 | X | 9221415..9221510 | 198..103 | 480 | 100 | Minus |
X | 23542271 | X | 9222939..9223026 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:02:08 has no hits.
BS13838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:47 Download gff for
BS13838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12120-PA | 1..642 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:08:54 Download gff for
BS13838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..873 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:04 Download gff for
BS13838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 232..873 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:04 Download gff for
BS13838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9218949..9219187 | 413..655 | 97 | <- | Minus |
X | 9219253..9219363 | 302..412 | 100 | <- | Minus |
X | 9221210..9221313 | 198..301 | 100 | <- | Minus |
X | 9221416..9221509 | 104..197 | 100 | <- | Minus |
X | 9222940..9223026 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:08:54 Download gff for
BS13838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112982..9113220 | 413..655 | 97 | <- | Minus |
arm_X | 9113286..9113396 | 302..412 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 198..301 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 104..197 | 100 | <- | Minus |
arm_X | 9116973..9117059 | 17..103 | 100 | | Minus |
BS13838.pep Sequence
Translation from 16 to 1179
> BS13838.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYK*
BS13838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-PB | 387 | CG12120-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
t-PA | 387 | CG12120-PA | 1..387 | 1..387 | 2052 | 100 | Plus |