Clone Sequence Records
BS13839.complete Sequence
2030 bp assembled on 2009-12-07
GenBank Submission: KX803006
> BS13839.complete
GAAGTTATCAGTCGACATGCAGGCCGAAGGCGACTCAAGGCGAAAGCGGC
CCAAGAAGAAGGGCAACCGCTTTATGCGGAACGCCAAGGGGTTCGCCAAG
CAGGGGATATTCGGCCGGGGTACGCACATCGACGACGAGCAGTTCAACTA
CTTCATCAACATTCTGGATGCTATGAAAGTGGGATTCGAGGACGTAGAGG
AGCGAGTCATCATGGCCAACAATGTGTTCGAGCAGACCCACGATCAGGAG
ATCCATCTGGCCTCCAATCAGATCGTGTCCAAGGCTCTGGAGTCGTTAGT
GGGCTTCGTGGACGACGTGCAGTTGGAGCGCTTTTTTAGCAAGTTTGGCG
ACAACCTCCGGCCCATGTGCTCCGATCGGTTTGCCTCGCACGTCCTGCAG
AAAATGCTGGAAATCGCCTTTTTGCGCGGAGTGGGAAAATCTGCAGCCCA
GGATACCAGCGATGCAGCTAGCGCCAACAAAAAAGCTAAGCCGGATGCCG
CTCAAGAGGAGGAGGAGTACAACCTGCAGGCGGACTTCACAGATGATCAC
CGCGAGAAGTGCCGGCAGTTCGTTCTTCGCATATCAAAGTTCATGTTGAA
CAATCTGGAGGACTTCGTTTGGGACGCCTGTGCCAGCCACATCATGCGCA
CAGCCATTCTGTGCCTGGTGGGCATGCACGTTCCCAAAATCGCCTTCGAG
AAAGGTGGGACTGAGATAGCCAAGCATAGGAAGATGTACTCTGTGCCGGA
TGAGTGGCAGGAGGTCATGAAGGAGTTCCCCCAGCGCCTGGAGATGTGGC
CCCAGTTCGGCGACTTTCCCTACCAGGATCACTCTTCAAGTCTGCTGGGC
GTCATCTGTTTGGCCCTCAGTGTCGTGGACAAAAGTATGCTCAAGCATTT
TGCCAAGAAAATCCTGACGATCGGTCTGCTGAAGTCGAGCGACGAGGACG
AGGAGAAAATGGAATTGGACACCAAAATCGAAATCAAGGACGAGGATGAT
GATAATGATGAAAAGGAGGATAAGAAGGCGAAAGAAGCAGATGCCGACAC
TGAGAACAAGCAGGAAGAGCCAAAACTACCCAAAGTTTTCCATCATCAAA
GCTCAGTCATTCTGCTCGAAACGATTATGAGCGTAGCGGGAGCCAAATTG
ATGATCCAGCTGTATGCGATGCTCTTCTGCAACCGAATAGGTTACCTAGC
TCGGCAGCCAGGAACGAACTTTTCAGTCCAGCGTCTCCTTCAGCACATCA
AAGAGGTGCCTGATTTCGAGTCCGTTTTCACCGAACTCCAGCCGCATGTG
GAGGAGCTGCTGAAAATGGGATACACCGGCGTCGTGTCCGCCCTCAGTGC
CGCCTGCTTGCGACTGGCCACCAAGCAGTCTCAGATGATAGCCGCTTTGC
AGAGTGCCCTCCATGTCAGTGGCGACAAGGAGAAATCGAAGCTTTTCCTT
ACATGTTTGATTAAGTTAAAGCCCTTTGAGGTGGTGACCGGCGACGAGTC
GGCCTTTGTTCATCTGCACGGTTCGCTTATTACTCAACACCTGCTGCAGT
TCAACAAGCCAATCTTTCTGGTCAACTGTATCCTCGATCTGCCCGCCACC
CAACTGGCTCAGGTCTTCAACACACCCAATGGCTCACACATCGTTGACGC
CTTCATGCAGAGCAAGTTCATCGGCGAGAAGTCCCGCGAGCGTCTGATCC
GCCAGTTGGATGGCTTCTACGTAGACTTGGCCATCACTCGACATGGTTCC
CGCGTCTTCGAACAGTGCTTTAAGGCCGCCCAAGATGCGCAGAAACTGCG
CATGGCCAAGGAACTGTTTTCCAAGGCCAATATGCTGAAAGGCTCACCAC
ACGGTCGGATCATCTACACAAAATACCGCCTGGACACGTACAAGCTTTCA
CCTACGCAATGGCAGGAAAGTTTGTCCAAGCATCTGGACGCCGAGCAGAC
AAAGGAGACGAAGCGGAAAACGGCCAAGACAGCTGTCGAAGCTTTTAAGG
ACATACTTAGCTAGAAGCTTTCTAGACCAT
BS13839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 1998 | CG11123-PA | 1..1998 | 17..2014 | 9975 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 2122 | CG11123-RA | 74..2071 | 17..2014 | 9975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7441025..7442834 | 205..2014 | 9035 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7440779..7440968 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:57 has no hits.
BS13839.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:24 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 87..2084 | 17..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:39 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 74..2071 | 17..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:58 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 87..2084 | 17..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:08 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 74..2071 | 17..2014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:08 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7440779..7440968 | 17..206 | 100 | -> | Plus |
| 2R | 7441027..7442834 | 207..2014 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:39 Download gff for
BS13839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3328284..3328473 | 17..206 | 100 | -> | Plus |
| arm_2R | 3328532..3330339 | 207..2014 | 99 | | Plus |
BS13839.3prime Sequence
719 bp (617 high quality bases) assembled on 2006-10-13
> BS13839.3prime
ATGGTCTAGAAAGCTTCTAGCTAAGTATGTCCTTAAAAGCTTCGACAGCT
GTCTTGGCCGTTTTCCGCTTCGTCTCCTTTGTCTGCTCGGCGTCCAGATG
CTTGGACAAACTTTCCTGCCATTGCGTAGGTGAAAGCTTGTACGTGTCCA
GGCGGTATTTTGTGTAGATGATCCGACCGTGTGGTGAGCCTTTCAGCATA
TTGGCCTTGGAAAACAGTTCCTTGGCCATGCGCAGTTTCTGCGCATCTTG
GGCGGCCTTAAAGCACTGTTCGAAGACGCGGGAACCATGTCGAGTGATGG
CCAAGTCTACGTAGAAGCCATCCAACTGGCGGATCAGACGCTCGCGGGAC
TTCTCGCCGATGAACTTGCTCTGCATGAAGGCGTCAACGATGTGTGAGCC
ATTGGGTGTGTTGAAGACCTGAGCCAGTTGGGTGGCGGGCAGATCGAGGA
TACAGTTGACCAGAAAGATTGGCTTGTTGAACTGCAGCAGGTGTTGAGTA
ATAAGCGAACCGTGCAGATGAACAAAGGCCGACTCGTCGCCGGTCACCAC
CTCAAAGGGCTTTAACTTAATCAAACATGTAAGGAAAAGCTTCGATTTCT
CCTTGTCGCCACTGACATGGAGGGCACTCTGCAAAGCGGCTATCATCTGA
GACTGCTTGGTGGCCATTCGCAAGCAGGCGGCACTGAGGGCGGACACGAC
GCCCGTGTATCCCATTTTC
BS13839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-PA | 1998 | CG11123-RA | 1296..1998 | 719..17 | 3440 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 2122 | CG11123-RA | 1369..2071 | 719..17 | 3470 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7442132..7442834 | 719..17 | 3470 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:20:27 has no hits.
BS13839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:47 Download gff for
BS13839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-PA | 1296..1998 | 17..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:53 Download gff for
BS13839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 1369..2071 | 17..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:25 Download gff for
BS13839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 1369..2071 | 17..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:25 Download gff for
BS13839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7442132..7442834 | 17..719 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:53 Download gff for
BS13839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3329637..3330339 | 17..719 | 99 | | Minus |
BS13839.5prime Sequence
749 bp (701 high quality bases) assembled on 2006-10-13
> BS13839.5prime
GAAGTTATCAGTCGACATGCAGGCCGAAGGCGACTCAAGGCGAAAGCGGC
CCAAGAAGAAGGGCAACCGCTTTATGCGGAACGCCAAGGGGTTCGCCAAG
CAGGGGATATTCGGCCGGGGTACGCACATCGACGACGAGCAGTTCAACTA
CTTCATCAACATTCTGGATGCTATGAAAGTGGGATTCGAGGACGTAGAGG
AGCGAGTCATCATGGCCAACAATGTGTTCGAGCAGACCCACGATCAGGAG
ATCCATCTGGCCTCCAATCAGATCGTGTCCAAGGCTCTGGAGTCGTTAGT
GGGCTTCGTGGACGACGTGCAGTTGGAGCGCTTTTTTAGCAAGTTTGGCG
ACAACCTCCGGCCCATGTGCTCCGATCGGTTTGCCTCGCACGTCCTGCAG
AAAATGCTGGAAATCGCCTTTTTGCGCGGAGTGGGAAAATCTGCAGCCCA
GGATACCAGCGATGCAGCTAGCGCCAACAAAAAAGCTAAGCCGGATGCCG
CTCAAGAGGAGGAGGAGTACAACCTGCAGGCGGACTTCACAGATGATCAC
CGCGAGAAGTGCCGGCAGTTCGTTCTTCGCATATCANAGTTCATGTTGAA
CAATCTGGAGGACTTCGTTTGGGACGCCTGTGCCAGCCACATCATGCGCA
CAGCCATTCTGTGCCTGGTGGGCATGCACGTTCCCAAAATCGCCTTCGAG
AAAGGTGGGACTGAGATAGCCAAGCATAGGAAGATGTACTCTGTGCCGG
BS13839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-PA | 1998 | CG11123-RA | 1..733 | 17..749 | 3646 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 2122 | CG11123-RA | 74..806 | 17..749 | 3654 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7441025..7441569 | 205..749 | 2714 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7440779..7440968 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:44:55 has no hits.
BS13839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:47 Download gff for
BS13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-PA | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:20 Download gff for
BS13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 68..806 | 10..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:45 Download gff for
BS13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 68..806 | 10..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:45 Download gff for
BS13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7440773..7440968 | 10..206 | 98 | -> | Plus |
| 2R | 7441027..7441569 | 207..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:20 Download gff for
BS13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3328278..3328473 | 10..206 | 98 | -> | Plus |
| arm_2R | 3328532..3329074 | 207..749 | 99 | | Plus |
BS13839.pep Sequence
Translation from 16 to 2013
> BS13839.pep
MQAEGDSRRKRPKKKGNRFMRNAKGFAKQGIFGRGTHIDDEQFNYFINIL
DAMKVGFEDVEERVIMANNVFEQTHDQEIHLASNQIVSKALESLVGFVDD
VQLERFFSKFGDNLRPMCSDRFASHVLQKMLEIAFLRGVGKSAAQDTSDA
ASANKKAKPDAAQEEEEYNLQADFTDDHREKCRQFVLRISKFMLNNLEDF
VWDACASHIMRTAILCLVGMHVPKIAFEKGGTEIAKHRKMYSVPDEWQEV
MKEFPQRLEMWPQFGDFPYQDHSSSLLGVICLALSVVDKSMLKHFAKKIL
TIGLLKSSDEDEEKMELDTKIEIKDEDDDNDEKEDKKAKEADADTENKQE
EPKLPKVFHHQSSVILLETIMSVAGAKLMIQLYAMLFCNRIGYLARQPGT
NFSVQRLLQHIKEVPDFESVFTELQPHVEELLKMGYTGVVSALSAACLRL
ATKQSQMIAALQSALHVSGDKEKSKLFLTCLIKLKPFEVVTGDESAFVHL
HGSLITQHLLQFNKPIFLVNCILDLPATQLAQVFNTPNGSHIVDAFMQSK
FIGEKSRERLIRQLDGFYVDLAITRHGSRVFEQCFKAAQDAQKLRMAKEL
FSKANMLKGSPHGRIIYTKYRLDTYKLSPTQWQESLSKHLDAEQTKETKR
KTAKTAVEAFKDILS*
BS13839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-PA | 665 | CG11123-PA | 1..665 | 1..665 | 3417 | 100 | Plus |
