Clone Sequence Records
BS13842.3prime Sequence
441 bp (412 high quality bases) assembled on 2006-10-13
> BS13842.3prime
ATGGTCTAGAAAGCTTCTAATTTTGCACCGCCGGCTGCTGCTGCTCCTGC
TTCAGCTTCTCCTGACTCTGGTGGTAGTGGTAGGCCCGTGCCAGCTGCAC
CACCTGCGTGATGCCCACGAAGAGATTCACGGCGAACAGGCTGTAGTTCT
TGGGTATGATCACCAGCGAGTAACGCGACCAGATGATGCCCGTGGCAGCC
AGGGCGGCGCATCCAGACACGGAGATGGTGTCGGCCGGTCGGGCCAAGTC
ACTCAGGCCGGCGGCAACGAGACCCCATTTGAAGACGGGTGCCCAAAAGA
ATATCGTCTTGGGACCAGCTGGATGCATCCACAGTGGCCGCAGCTTGGCG
GGCACAAATTTGTCGGCGGCGCCAATCATCCCGTTGTACAGCTTGGAGTG
GATGCCCTTTCCGGCGGAAGGGACGGCCGATGGTGGCGGCG
BS13842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-PB | 465 | CG9399-RB | 41..465 | 441..17 | 2125 | 100 | Minus |
| CG9399-PA | 465 | CG9399-RA | 41..465 | 441..17 | 2125 | 100 | Minus |
| CG9396-PA | 456 | CG9396-RA | 278..348 | 186..116 | 180 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-RE | 1108 | CG9399-RE | 98..523 | 441..16 | 2130 | 100 | Minus |
| CG9399-RD | 1017 | CG9399-RD | 310..735 | 441..16 | 2130 | 100 | Minus |
| CG9399-RA | 1147 | CG9399-RA | 137..562 | 441..16 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9572496..9572755 | 16..275 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 9573352..9573479 | 314..441 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 9570591..9570661 | 116..186 | 250 | 90.1 | Plus |
| 3R | 32079331 | 3R | 9573248..9573290 | 274..316 | 215 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 11:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2364 | 81..34 | 105 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2853 | 81..34 | 105 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6857 | 81..34 | 105 | 68.8 | Minus |
BS13842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:49 Download gff for
BS13842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-PA | 41..465 | 17..441 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:44 Download gff for
BS13842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RA | 137..562 | 16..441 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:41 Download gff for
BS13842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RA | 137..562 | 16..441 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:41 Download gff for
BS13842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9572496..9572754 | 16..274 | 100 | <- | Plus |
| 3R | 9573249..9573289 | 275..315 | 100 | <- | Plus |
| 3R | 9573354..9573479 | 316..441 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:44 Download gff for
BS13842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5398971..5399011 | 275..315 | 100 | <- | Plus |
| arm_3R | 5399076..5399201 | 316..441 | 100 | | Plus |
| arm_3R | 5398218..5398476 | 16..274 | 100 | <- | Plus |
BS13842.5prime Sequence
452 bp (435 high quality bases) assembled on 2006-10-13
> BS13842.5prime
GAAGTTATCAGTCGACATGTCGTCCACAGCCGTTCAGCCACCGCCGCCCG
TTCCCCCGCCGCCACCATCGGCCGTCCCTTCCGCCGGAAAGGGCATCCAC
TCCAAGCTGTACAACGGGATGATTGGCGCCGCCGACAAATTTGTGCCCGC
CAAGCTGCGGCCACTGTGGATGCATCCAGCTGGTCCCAAGACGATATTCT
TTTGGGCACCCGTCTTCAAATGGGGTCTCGTTGCCGCCGGCCTGAGTGAC
TTGGCCCGACCGGCCGACACCATCTCCGTGTCTGGATGCGCCGCCCTGGC
TGCCACGGGCATCATCTGGTCGCGTTACTCGCTGGTGATCATACCCAAGA
ACTACAGCCTGTTCGCCGTGAATCTCTTCGTGGGCATCACGCAGGTGGTG
CAGCTGGCACGGGCCTACCACTACCACCAGAGTCAGGAGAAACTGAAACA
GG
BS13842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-PB | 465 | CG9399-RB | 1..431 | 17..447 | 2130 | 99.7 | Plus |
| CG9399-PA | 465 | CG9399-RA | 1..431 | 17..447 | 2130 | 99.7 | Plus |
| CG9396-PA | 456 | CG9396-RA | 278..348 | 312..382 | 180 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-RD | 1017 | CG9399-RD | 270..705 | 17..452 | 2150 | 99.5 | Plus |
| CG9399-RA | 1147 | CG9399-RA | 97..532 | 17..452 | 2150 | 99.5 | Plus |
| CG9399-RB | 1008 | CG9399-RB | 261..696 | 17..452 | 2150 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9572526..9572755 | 452..223 | 1120 | 99.1 | Minus |
| 3R | 32079331 | 3R | 9573352..9573519 | 184..17 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 9570591..9570661 | 382..312 | 250 | 90.1 | Minus |
| 3R | 32079331 | 3R | 9573248..9573290 | 224..182 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:47:35 has no hits.
BS13842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:50 Download gff for
BS13842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-PA | 1..436 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:21 Download gff for
BS13842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 254..696 | 9..452 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:30 Download gff for
BS13842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 254..696 | 9..452 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:30 Download gff for
BS13842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9572526..9572754 | 224..452 | 99 | <- | Minus |
| 3R | 9573249..9573289 | 183..223 | 100 | <- | Minus |
| 3R | 9573354..9573526 | 9..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:21 Download gff for
BS13842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5398248..5398476 | 224..452 | 99 | <- | Minus |
| arm_3R | 5398971..5399011 | 183..223 | 100 | <- | Minus |
| arm_3R | 5399076..5399248 | 9..182 | 97 | | Minus |
BS13842.complete Sequence
497 bp assembled on 2006-11-01
GenBank Submission: FJ637537
> BS13842.complete
GAAGTTATCAGTCGACATGTCGTCCACAGCCGTTCAGCCACCGCCGCCCG
TTCCCCCGCCGCCACCATCGGCCGTCCCTTCCGCCGGAAAGGGCATCCAC
TCCAAGCTGTACAACGGGATGATTGGCGCCGCCGACAAATTTGTGCCCGC
CAAGCTGCGGCCACTGTGGATGCATCCAGCTGGTCCCAAGACGATATTCT
TTTGGGCACCCGTCTTCAAATGGGGTCTCGTTGCCGCCGGCCTGAGTGAC
TTGGCCCGACCGGCCGACACCATCTCCGTGTCTGGATGCGCCGCCCTGGC
TGCCACGGGCATCATCTGGTCGCGTTACTCGCTGGTGATCATACCCAAGA
ACTACAGCCTGTTCGCCGTGAATCTCTTCGTGGGCATCACGCAGGTGGTG
CAGCTGGCACGGGCCTACCACTACCACCAGAGTCAGGAGAAGCTGAAGCA
GGAGCAGCAGCAGCCGGCGGTGCAAAATTAGAAGCTTTCTAGACCAT
BS13842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-RD | 465 | CG9399-PD | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG9399-RA | 465 | CG9399-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG9399-RB | 465 | CG9399-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-RD | 1017 | CG9399-RD | 270..735 | 17..482 | 2330 | 100 | Plus |
| CG9399-RA | 1147 | CG9399-RA | 97..562 | 17..482 | 2330 | 100 | Plus |
| CG9399-RB | 1008 | CG9399-RB | 261..726 | 17..482 | 2330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9572496..9572755 | 482..223 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 9573352..9573519 | 184..17 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 9570591..9570661 | 382..312 | 250 | 90.1 | Minus |
| 3R | 32079331 | 3R | 9573248..9573290 | 224..182 | 215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2853 | 417..464 | 105 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6857 | 417..464 | 105 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2364 | 417..464 | 105 | 68.8 | Plus |
BS13842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:33 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:17 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 254..726 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:29 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 261..725 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:33 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 254..726 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:07 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9399-RB | 261..725 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:07 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9572497..9572754 | 224..481 | 100 | <- | Minus |
| 3R | 9573249..9573289 | 183..223 | 100 | <- | Minus |
| 3R | 9573354..9573519 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:29 Download gff for
BS13842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5398219..5398476 | 224..481 | 100 | <- | Minus |
| arm_3R | 5398971..5399011 | 183..223 | 100 | <- | Minus |
| arm_3R | 5399076..5399241 | 17..182 | 100 | | Minus |
BS13842.pep Sequence
Translation from 16 to 480
> BS13842.pep
MSSTAVQPPPPVPPPPPSAVPSAGKGIHSKLYNGMIGAADKFVPAKLRPL
WMHPAGPKTIFFWAPVFKWGLVAAGLSDLARPADTISVSGCAALAATGII
WSRYSLVIIPKNYSLFAVNLFVGITQVVQLARAYHYHQSQEKLKQEQQQP
AVQN*
BS13842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9399-PD | 154 | CG9399-PD | 1..154 | 1..154 | 813 | 100 | Plus |
| CG9399-PA | 154 | CG9399-PA | 1..154 | 1..154 | 813 | 100 | Plus |
| CG9399-PB | 154 | CG9399-PB | 1..154 | 1..154 | 813 | 100 | Plus |
| CG9399-PE | 120 | CG9399-PE | 1..120 | 35..154 | 627 | 100 | Plus |
| CG9396-PA | 151 | CG9396-PA | 5..148 | 11..153 | 518 | 66.7 | Plus |
