Clone BS13843 Report

Search the DGRC for BS13843

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG3198-RA
Protein status:BS13843.pep: full length peptide match
Sequenced Size:1349

Clone Sequence Records

BS13843.complete Sequence

1349 bp assembled on 2009-12-07

GenBank Submission: KX802754

> BS13843.complete
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTCACAAATCCCAGCGAAG
AAAGTCCAACTACTCCTCTTCCAGCCGCCACCACGCTAGATGAAGCGCCG
GATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCACAACGACTGACGATGC
CGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAAACGTCAGAGAAGACGG
ATAGCAAGGCGGCTGGCTGGTCGCATGATGCCATGCCCGAGAAACAAATG
AAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAGTCGGCGATGCACAGCA
GCGGATCGAGGACCATTTGATGGGTAAACAGCATCTGGGCTACTCCAAAC
TGCGCAACGCCGTCGCCGAGATCAACGAGGCGCGACAGAAGGAGCGCGAG
CAGGAGGAACGACGTCGACGTGAGGGTCGAGTGCAGCGCTTCCACTCCTA
CGATAGCAGACGCGAGCCACGCAGTGAGTACCGCGAGCGAAGTCGCGACT
ATGTTCAGAATCGCCAGCCCTCGGATCGACGTCACCATCACCATAAATCG
CACCACAGCTCCCATCACTCGTATTCGCGCAGTGGCGGTGGTGGCGGCGG
TGTAGGAGTTGGCGGCGGAGGAGGTGGTGGAAGCAGTCGGAGCAACCGGA
GCCATCATAATCACAACCATAATCACTACCGCCATGACAGCCGCGAGCGA
CATTGCCGCAGCCGGAGTCGCAGTCGCTACTAGAAGCTTTCTAGACCAT

BS13843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 1317 CG3198-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 236..1553 17..1334 6590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672620..6673570 1062..112 4740 99.9 Minus
X 23542271 X 6671982..6672179 1334..1137 990 100 Minus
X 23542271 X 6673637..6673738 118..17 510 100 Minus
X 23542271 X 6672262..6672336 1136..1062 375 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:28:43 has no hits.

BS13843.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:28 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 232..1548 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:10 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1552 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:22 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 232..1548 17..1333 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:18 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1552 17..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:18 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
X 6672620..6673563 119..1062 100 <- Minus
X 6671983..6672179 1137..1333 100 <- Minus
X 6672262..6672335 1063..1136 100 <- Minus
X 6673637..6673738 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:10 Download gff for BS13843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6566016..6566212 1137..1333 100 <- Minus
arm_X 6566295..6566368 1063..1136 100 <- Minus
arm_X 6566653..6567596 119..1062 100 <- Minus
arm_X 6567670..6567771 17..118 100   Minus

BS13843.3prime Sequence

639 bp (637 high quality bases) assembled on 2006-10-13

> BS13843.3prime
ATGGTCTAGAAAGCTTCTAGTAGCGACTGCGACTCCGGCTGCGGCAATGT
CGCTCGCGGCTGTCATGGCGGTAGTGATTATGGTTGTGATTATGATGGCT
CCGGTTGCTCCGACTGCTTCCACCACCTCCTCCGCCGCCAACTCCTACAC
CGCCGCCACCACCGCCACTGCGCGAATACGAGTGATGGGAGCTGTGGTGC
GATTTATGGTGATGGTGACGTCGATCCGAGGGCTGGCGATTCTGAACATA
GTCGCGACTTCGCTCGCGGTACTCACTGCGTGGCTCGCGTCTGCTATCGT
AGGAGTGGAAGCGCTGCACTCGACCCTCACGTCGACGTCGTTCCTCCTGC
TCGCGCTCCTTCTGTCGCGCCTCGTTGATCTCGGCGACGGCGTTGCGCAG
TTTGGAGTAGCCCAGATGCTGTTTACCCATCAAATGGTCCTCGATCCGCT
GCTGTGCATCGCCGACTATCAGGAAAGCGCCACAGATTTCGCACACCTTC
ATTTGTTTCTCGGGCATGGCATCATGCGACCAGCCAGCCGCCTTGCTATC
CGTCTTCTCTGACGTTTTGTCCTCGCTGGCTGCACCAGCTGCTTCACCGG
CATCGTCAGTCGTTGTGACAGCTGCTTGTGCGGAACTTG

BS13843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 1317 CG3198-RA 695..1317 639..17 3115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 930..1553 639..16 3120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672620..6672971 288..639 1760 100 Plus
X 23542271 X 6671982..6672179 16..213 990 100 Plus
X 23542271 X 6672262..6672336 214..288 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:35:34 has no hits.

BS13843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:51 Download gff for BS13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 695..1317 17..639 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:26 Download gff for BS13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 930..1553 16..639 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:25 Download gff for BS13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 930..1553 16..639 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:25 Download gff for BS13843.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6671982..6672179 16..213 100 <- Plus
X 6672262..6672335 214..287 100 <- Plus
X 6672620..6672971 288..639 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:26 Download gff for BS13843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6566015..6566212 16..213 100 <- Plus
arm_X 6566295..6566368 214..287 100 <- Plus
arm_X 6566653..6567004 288..639 100   Plus

BS13843.5prime Sequence

623 bp (587 high quality bases) assembled on 2006-10-13

> BS13843.5prime
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCA

BS13843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 1317 CG3198-RA 1..607 17..623 3035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 236..842 17..623 3035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6673059..6673570 623..112 2545 99.8 Minus
X 23542271 X 6673637..6673738 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:22:35 has no hits.

BS13843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:51 Download gff for BS13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:50:07 Download gff for BS13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..841 17..622 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:47:18 Download gff for BS13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..841 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:47:18 Download gff for BS13843.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6673060..6673563 119..622 100 <- Minus
X 6673637..6673738 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:50:07 Download gff for BS13843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6567093..6567596 119..622 100 <- Minus
arm_X 6567670..6567771 17..118 100   Minus

BS13843.pep Sequence

Translation from 16 to 1332

> BS13843.pep
MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI
NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR
KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR
GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH
PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG
AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH
LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE
PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG
GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRY*

BS13843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 438 CG3198-PA 1..438 1..438 2330 100 Plus
CG7564-PD 420 CG7564-PD 12..178 3..177 238 32.6 Plus
CG7564-PB 420 CG7564-PB 12..178 3..177 238 32.6 Plus
CG7564-PC 420 CG7564-PC 12..178 3..177 238 32.6 Plus
CG7564-PA 420 CG7564-PA 12..178 3..177 238 32.6 Plus
CG7564-PD 420 CG7564-PD 150..361 244..438 158 25.2 Plus
CG7564-PB 420 CG7564-PB 150..361 244..438 158 25.2 Plus
CG7564-PC 420 CG7564-PC 150..361 244..438 158 25.2 Plus