Clone Sequence Records
BS13844.3prime Sequence
469 bp (445 high quality bases) assembled on 2006-10-13
> BS13844.3prime
ATGGTCTAGAAAGCTTTCATTCCTTTTCGAAGAACTCGTCGTAGGGAATG
TTGGCCCACAGACTCTGTACGATGGCACTGAAGGCCTTGGCGCAGGCCTC
GTTGATCTTCGGCTGGACATCGAGGGCCAGGGTGCTCCACTCCTGGTTCA
GCACCTTCAGCGTGCTGTCGCGCAGCTCCTTGTTGTCGTTGAACAGATTC
GACAGGTCAAAGTGGCCACCCTTGATCTTGGTGGCCGTCTTGTAGTCGGT
GATGTTGAGATAGGTGTGGCCATCGGAGCGCTTCACTGGCTCGGCGGTAA
TCCAAACCTTTGTGTGCACATCGTTCAACCGAATGGTCAGGTCGCCCTTG
CTGACAATGGGCAGGATGAGCAGCTTGCCGTCTACGTCGTACTTGGCCCG
CACCTCCAGTTCCGGATTGTCCAAGAGCAGGGTCAGCTTGAGCGGCCTGG
TGAGGTCCTTGGTGAATCC
BS13844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-PA | 783 | CG2650-RA | 331..783 | 469..17 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-RA | 1013 | CG2650-RA | 397..850 | 469..16 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2693156..2693406 | 219..469 | 1255 | 100 | Plus |
| X | 23542271 | X | 2692895..2693098 | 16..219 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:00:11 has no hits.
BS13844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:51 Download gff for
BS13844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-PA | 331..783 | 17..469 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:49 Download gff for
BS13844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 397..860 | 7..469 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:45 Download gff for
BS13844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 397..860 | 7..469 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:45 Download gff for
BS13844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2692885..2693097 | 7..218 | 98 | <- | Plus |
| X | 2693156..2693406 | 219..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:49 Download gff for
BS13844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2587189..2587439 | 219..469 | 100 | | Plus |
| arm_X | 2586918..2587130 | 7..218 | 98 | <- | Plus |
BS13844.5prime Sequence
559 bp (517 high quality bases) assembled on 2006-10-13
> BS13844.5prime
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCCGACCAGTGAAGCGCTCCGAATGGCCA
CACCTATCT
BS13844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-PA | 783 | CG2650-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-RA | 1013 | CG2650-RA | 67..608 | 17..559 | 2645 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2693195..2693648 | 559..105 | 2180 | 99.1 | Minus |
| X | 23542271 | X | 2693733..2693820 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:35 has no hits.
BS13844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:51 Download gff for
BS13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-PA | 1..542 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:12 Download gff for
BS13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..608 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:17 Download gff for
BS13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..608 | 17..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:17 Download gff for
BS13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2693195..2693648 | 105..559 | 99 | <- | Minus |
| X | 2693733..2693820 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:12 Download gff for
BS13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2587228..2587681 | 105..559 | 99 | <- | Minus |
| arm_X | 2587766..2587853 | 17..104 | 100 | | Minus |
BS13844.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ637538
> BS13844.complete
GAAGTTATCAGTCGACATGCAGCTAACCGGTGCCTCTATGTTCCTCGTAT
GGGTGGGTCTACTCAGCTGGGTTTCCTGCAGAGTGGACGCCTCCGAAGGA
TTTCCATCGCCGCTGAAGCGCTGCAAGCTCCAGGATGAGTCGTGCTTGCT
GGCTCAGGCGCAAACCTTTTTCCAAGCCTTCAAGAATGGCATTCCGGAGC
GGCAGGTGGCCGCGCTGGAGCCCATTGCCCTGGGCACGATGTTCATCGAG
AGCGGCGGCCACTCGGAGTCGATAAAGTTCAAACTGACCATGAGCGATGC
CAAGCTCTACAATCTGGCCAACTCGATGATGGTCAAGAGCCTGAAGGGAT
TCACCAAGGACCTCACCAGGCCGCTCAAGCTGACCCTGCTCTTGGACAAT
CCGGAACTGGAGGTGCGGGCCAAGTACGACGTAGACGGCAAGCTGCTCAT
CCTGCCCATTGTCAGCAAGGGCGACCTGACCATTCGGTTGAACGATGTGC
ACACAAAGGTTTGGATTACCGCCGAGCCAGTGAAGCGCTCCGATGGCCAC
ACCTATCTCAACATCACCGACTACAAGACGGCCACCAAGATCAAGGGTGG
CCACTTTGACCTGTCGAATCTGTTCAACGACAACAAGGAGCTGCGCGACA
GCACGCTGAAGGTGCTGAACCAGGAGTGGAGCACCCTGGCCCTCGATGTC
CAGCCGAAGATCAACGAGGCCTGCGCCAAGGCCTTCAGTGCCATCGTACA
GAGTCTGTGGGCCAACATTCCCTACGACGAGTTCTTCGAAAAGGAATGAA
AGCTTTCTAGACCAT
BS13844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-RA | 783 | CG2650-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-RA | 1013 | CG2650-RA | 67..850 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2693156..2693648 | 597..105 | 2465 | 100 | Minus |
| X | 23542271 | X | 2692895..2693098 | 800..597 | 1020 | 100 | Minus |
| X | 23542271 | X | 2693733..2693820 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:18:09 has no hits.
BS13844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:58 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:24 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..860 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:28 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..848 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:58 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..860 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:36 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2650-RA | 67..848 | 17..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:36 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2692897..2693097 | 598..798 | 100 | <- | Minus |
| X | 2693156..2693648 | 105..597 | 100 | <- | Minus |
| X | 2693733..2693820 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:28 Download gff for
BS13844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2586930..2587130 | 598..798 | 100 | <- | Minus |
| arm_X | 2587189..2587681 | 105..597 | 100 | <- | Minus |
| arm_X | 2587766..2587853 | 17..104 | 100 | | Minus |
BS13844.pep Sequence
Translation from 16 to 798
> BS13844.pep
MQLTGASMFLVWVGLLSWVSCRVDASEGFPSPLKRCKLQDESCLLAQAQT
FFQAFKNGIPERQVAALEPIALGTMFIESGGHSESIKFKLTMSDAKLYNL
ANSMMVKSLKGFTKDLTRPLKLTLLLDNPELEVRAKYDVDGKLLILPIVS
KGDLTIRLNDVHTKVWITAEPVKRSDGHTYLNITDYKTATKIKGGHFDLS
NLFNDNKELRDSTLKVLNQEWSTLALDVQPKINEACAKAFSAIVQSLWAN
IPYDEFFEKE*
BS13844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2650-PA | 260 | CG2650-PA | 1..260 | 1..260 | 1341 | 100 | Plus |
| to-PB | 249 | CG11853-PB | 1..248 | 8..260 | 294 | 29.5 | Plus |
| to-PA | 249 | CG11853-PA | 1..248 | 8..260 | 294 | 29.5 | Plus |
| CG11854-PB | 250 | CG11854-PB | 23..248 | 29..257 | 288 | 29.1 | Plus |
| CG11852-PA | 250 | CG11852-PA | 1..247 | 8..257 | 243 | 26.6 | Plus |
