Clone BS13846 Report

Search the DGRC for BS13846

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS9-RA
Protein status:BS13846.pep: full length peptide match
Sequenced Size:1220

Clone Sequence Records

BS13846.complete Sequence

1220 bp assembled on 2009-12-07

GenBank Submission: KX804583

> BS13846.complete
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAGACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAGAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAGATTGCCGG
CTTTCAGCTGCTGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCA
TTGCCGATATCGAATACTCCAACTTTACCAACTCCATGGATCGCCTGATC
GCATCGCCATATGCTTACAAGAGCAAAGCATTCATCGAGCGATACATGAA
ACCGCTGATGGACCAGTCCAAGCAGCTGGAGGTGCCCAAACCAAGGATCG
ATGAAGAGGGTCGCCAGTACATCACCACCTACGAGTGCCTGCGCAAAACT
GCTAGAGCCGATGTCACAGTGCGGCTACCCGGAACAGGAAAAATCAGCAT
TAATGGAAAGGATATCTCATACTTTGAGGACGAAAACTGCAGAGAACAGC
TGCTCTTCCCGCTGCAATTTAGCGAGCTGCTGGGCAAAGTCGATGTGGAG
GCCAACGTCGAGGGAGGCGGACCTTCCGGTCAGGCTGGAGCCATCCGCTG
GGGCATCGCCATGAGTTTGCGCAGCTTTGTCGATCAAGAGATGATTGAGT
CAATGCGTCTGGCCGGCCTGCTGACACGTGACTATCGCCGTCGGGAGCGT
AAGAAGTTCGGGCAGGAAGGAGCACGCCGCAAGTACACGTGGAAGAAGCG
CTAGAAGCTTTCTAGACCAT

BS13846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1188 CG2957-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 36..1224 17..1205 5945 100 Plus
CG10092-RB 2748 CG10092-RB 2107..2272 1112..947 830 100 Minus
CG10092-RB 2748 CG10092-RB 1944..2037 1205..1112 470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7901384..7901744 949..589 1805 100 Minus
3R 32079331 3R 7902238..7902455 329..112 1090 100 Minus
3R 32079331 3R 7902006..7902180 503..329 875 100 Minus
3R 32079331 3R 7889509..7889674 1112..947 830 100 Minus
3R 32079331 3R 7902536..7902632 113..17 485 100 Minus
3R 32079331 3R 7889346..7889439 1205..1112 470 100 Minus
3R 32079331 3R 7901810..7901895 588..503 430 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:07:23 has no hits.

BS13846.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:52 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 31..1218 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:27 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 36..1223 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:25 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 31..1218 17..1204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:28 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 36..1223 17..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:28 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7901810..7901895 503..588 100 <- Minus
3R 7902007..7902180 329..502 100 <- Minus
3R 7902239..7902454 113..328 100 <- Minus
3R 7902537..7902632 17..112 100   Minus
3R 7889347..7889438 1113..1204 100 <- Minus
3R 7889509..7889671 950..1112 100 <- Minus
3R 7901384..7901744 589..949 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:27 Download gff for BS13846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3727532..3727617 503..588 100 <- Minus
arm_3R 3727729..3727902 329..502 100 <- Minus
arm_3R 3727961..3728176 113..328 100 <- Minus
arm_3R 3728259..3728354 17..112 100   Minus
arm_3R 3715069..3715160 1113..1204 100 <- Minus
arm_3R 3715231..3715393 950..1112 100 <- Minus
arm_3R 3727106..3727466 589..949 100 <- Minus

BS13846.5prime Sequence

613 bp (536 high quality bases) assembled on 2006-10-13

> BS13846.5prime
GAAGTTATCAGTCGACATGGCACTGCGTGTTTTTGGCTTAAATATAGTAA
AAAATAACAGGAATCTGCTGCAAAATGCATGCAAATCCAGGGCACCGATG
CCATGCTACATGGCAGCGGCTCCATTTGCCACCGATGTGACCGTCCAGGC
TGCTCCGGCGGCTGTCCAGAAGCAAAGGGTGAGCAAGGCCATGCGGGCGT
ACCTGAAAAGAGCCACCGAACACGACGAGTTCATGAAGACCCAGCACCTG
GAGTTCCAGATCGGAAAGCGGCACCTGGCCAACATGATGGGCGCCGATGC
GGAGACGTTTACCCAGGAGGACATAGACGAGGCGATATCCTATCTGTTCC
CTTCCGGATTGTACGACCAAAAGGCCCGGCCGGCTATGAAGTCACCCGAG
GTTGTCTTCCCCGCCCGCAAGGCTGCGGAATTCGATGAAACGGGCAGACC
ATTCCACAGCATGTTCTACACCGGCAAACCCAACTTCTTCCAACTGCTTC
ATGACATTGTAAAAGAAACTAACAAGCTGGCGGATCTGGAGGAGCGCATG
CTACGGCGCGGCAATAAACCCGATGAGAACCAAAAACTTGAAATTGCCGG
CTTTCAGCTGCTG

BS13846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2957-PA 1188 mRpS9-RA 1..597 17..613 2910 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-RA 1293 CG2957-RA 36..632 17..613 2940 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7902238..7902455 329..112 1090 100 Minus
3R 32079331 3R 7902006..7902180 503..329 860 99.4 Minus
3R 32079331 3R 7902536..7902632 113..17 485 100 Minus
3R 32079331 3R 7901810..7901895 588..503 415 98.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:25:25 has no hits.

BS13846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:52 Download gff for BS13846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2957-PA 1..597 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:26 Download gff for BS13846.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..632 10..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:50 Download gff for BS13846.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS9-RA 33..632 10..613 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:50 Download gff for BS13846.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7901720..7901744 589..613 96 <- Minus
3R 7901810..7901895 503..588 98 <- Minus
3R 7902007..7902180 329..502 99 <- Minus
3R 7902239..7902454 113..328 100 <- Minus
3R 7902537..7902635 10..112 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:26 Download gff for BS13846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3727442..3727466 589..613 96 <- Minus
arm_3R 3727532..3727617 503..588 98 <- Minus
arm_3R 3727729..3727902 329..502 99 <- Minus
arm_3R 3727961..3728176 113..328 100 <- Minus
arm_3R 3728259..3728357 10..112 96   Minus

BS13846.pep Sequence

Translation from 16 to 1203

> BS13846.pep
MALRVFGLNIVKNNRNLLQNACKSRAPMPCYMAAAPFATDVTVQAAPAAV
QKQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQ
EDIDEAISYLFPSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMF
YTGKPNFFQLLHDIVEETNKLADLEERMLRRGNKPDENQKLEIAGFQLLP
KDQLELLLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIERYMKPLMDQ
SKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTGKISINGKDI
SYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGIAMS
LRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR*

BS13846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS9-PA 395 CG2957-PA 1..395 1..395 2036 100 Plus