Clone BS13848 Report

Search the DGRC for BS13848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17065-RA
Protein status:BS13848.pep: full length peptide match
Sequenced Size:1286

Clone Sequence Records

BS13848.3prime Sequence

583 bp (552 high quality bases) assembled on 2006-10-13

> BS13848.3prime
ATGGTCTAGAAAGCTTCTACTTGACAGTCCTATGAACACATACGCCAGCG
ATCCAGGTGGATAGCACCCGGAGCTGGTCGTCCAGGAGAACGAAGTCCGC
GTCCGAGCCAAAGTCCAGGGTGCCCTTCTGCTTTTCGATCTTCAGGCACT
GTGCTGGATGCAAGGTGGCCGCCTCGATGGCATAGACCACGGAGCAGTCG
GTCGCCTTCTGGAAGATCCGCACGCACTCGTCCATCGGGGCGATGCTGCC
GCACAGCGTCTCTGTGCCTGCGATGAACGCCTTGCCCTGCTTAACCTGCA
GCGGCAGCTGTCCGATGTGGTGGACACCCTCCTCGAGGCCCAGCGCCGAT
ATGGCGTCCGTCACCAGGATCAGGCCCTGCGGATGCGTGCGGTAGGCGAT
CCTCAGTGCCGCCGGATGAGTGTGCACTCCGTCCGAGATGATGCCGAAGT
ACACGGTCCTACCGTGCGGCACTGCGTCCGAGGCCAGCAGTCCCACCAGG
CCGGGATCGCGGTGATGGAACGGCAGCATGGCGTTGAACAGATGCGTGAT
CAGCGTGGCGCCCTGCTGCACGGCCCTCTCTCC

BS13848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PA 1254 CG17065-RA 688..1254 583..17 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 850..1416 583..17 2835 100 Minus
CG17065-RB 1598 CG17065-RB 824..1390 583..17 2835 100 Minus
CG17065-RA 1556 CG17065-RA 782..1348 583..17 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20255132..20255516 199..583 1925 100 Plus
X 23542271 X 20254900..20255082 17..199 915 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:38:43 has no hits.

BS13848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:54 Download gff for BS13848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 688..1254 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:31 Download gff for BS13848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 782..1351 13..583 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:34 Download gff for BS13848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 782..1351 13..583 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for BS13848.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20254897..20255081 13..198 98 <- Plus
X 20255132..20255516 199..583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:31 Download gff for BS13848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20125923..20126107 13..198 98 <- Plus
arm_X 20126158..20126542 199..583 100   Plus

BS13848.5prime Sequence

554 bp (465 high quality bases) assembled on 2006-10-13

> BS13848.5prime
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCCTGCGGAGGGTCCGTTTATCAATTCCG
CAGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGG
ACTC

BS13848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PA 1254 CG17065-RA 1..537 17..554 2625 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 163..699 17..554 2650 99.6 Plus
CG17065-RA 1556 CG17065-RA 95..631 17..554 2650 99.6 Plus
CG17065-RB 1598 CG17065-RB 95..625 17..548 2620 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20256773..20257037 281..17 1325 100 Minus
X 23542271 X 20255763..20256033 549..278 1295 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 07:01:12 has no hits.

BS13848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:55 Download gff for BS13848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-PA 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:05 Download gff for BS13848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 90..631 9..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:41 Download gff for BS13848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 90..631 9..554 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:41 Download gff for BS13848.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20255761..20256032 279..554 97 <- Minus
X 20256776..20257042 9..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:05 Download gff for BS13848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20126787..20127058 279..554 97 <- Minus
arm_X 20127802..20128068 9..278 98   Minus

BS13848.complete Sequence

1286 bp assembled on 2009-08-24

GenBank Submission: KX800169

> BS13848.complete
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGC
AGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGA
CTCAGCACGCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCAT
CACCCTGGCGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGG
TGGAGCGTGGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGC
GACGGAGAGAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTT
CAACGCCATGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGC
TGGCCTCGGACGCAGTGCCGCACGGTAGGACCGTGTACTTCGGCATCATC
TCGGACGGAGTGCACACTCATCCGGCGGCACTGAGGATCGCCTACCGCAC
GCATCCGCAGGGCCTGATCCTGGTGACGGACGCCATATCGGCGCTGGGCC
TCGAGGAGGGTGTCCACCACATCGGACAGCTGCCGCTGCAGGTTAAGCAG
GGCAAGGCGTTCATCGCAGGCACAGAGACGCTGTGCGGCAGCATCGCCCC
GATGGACGAGTGCGTGCGGATCTTCCAGAAGGCGACCGACTGCTCCGTGG
TCTATGCCATCGAGGCGGCCACCTTGCATCCAGCACAGTGCCTGAAGATC
GAAAAGCAGAAGGGCACCCTGGACTTTGGCTCGGACGCGGACTTCGTTCT
CCTGGACGACCAGCTCCGGGTGCTATCCACCTGGATCGCTGGCGTATGTG
TTCATAGGACTGTCAAGTAGAAGCTTTCTAGACCAT

BS13848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1254 CG17065-PD 1..1254 17..1270 6270 100 Plus
CG17065-RA 1254 CG17065-PA 1..1254 17..1270 6270 100 Plus
CG17065-RB 1296 CG17065-PB 571..1296 545..1270 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-RD 1624 CG17065-RD 163..1416 17..1270 6270 100 Plus
CG17065-RA 1556 CG17065-RA 95..1348 17..1270 6270 100 Plus
CG17065-RB 1598 CG17065-RB 665..1390 545..1270 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20255132..20255675 1088..545 2720 100 Minus
X 23542271 X 20255763..20256033 548..278 1355 100 Minus
X 23542271 X 20256773..20257037 281..17 1325 100 Minus
X 23542271 X 20254900..20255082 1270..1088 915 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:28:54 has no hits.

BS13848.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:53 Download gff for BS13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1348 17..1270 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:52 Download gff for BS13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1348 17..1270 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:33 Download gff for BS13848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17065-RA 95..1348 17..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:33 Download gff for BS13848.complete
Subject Subject Range Query Range Percent Splice Strand
X 20254900..20255081 1089..1270 100 <- Minus
X 20255132..20255672 548..1088 100 <- Minus
X 20255764..20256032 279..547 100 <- Minus
X 20256776..20257037 17..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:52 Download gff for BS13848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20125926..20126107 1089..1270 100 <- Minus
arm_X 20126158..20126698 548..1088 100 <- Minus
arm_X 20126790..20127058 279..547 100 <- Minus
arm_X 20127802..20128063 17..278 100   Minus

BS13848.pep Sequence

Translation from 16 to 1269

> BS13848.pep
MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDLWVRDG
RIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTET
IEEGVATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGIL
GIHAEGPFINPQKKGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPE
KVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLITHLFNAMLP
FHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGL
ILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLCGSIAPMDECV
RIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQL
RVLSTWIAGVCVHRTVK*

BS13848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17065-PD 417 CG17065-PD 1..417 1..417 2180 100 Plus
CG17065-PA 417 CG17065-PA 1..417 1..417 2180 100 Plus
CG17065-PB 431 CG17065-PB 1..431 1..417 2155 96.8 Plus