Clone Sequence Records
BS13848.3prime Sequence
583 bp (552 high quality bases) assembled on 2006-10-13
> BS13848.3prime
ATGGTCTAGAAAGCTTCTACTTGACAGTCCTATGAACACATACGCCAGCG
ATCCAGGTGGATAGCACCCGGAGCTGGTCGTCCAGGAGAACGAAGTCCGC
GTCCGAGCCAAAGTCCAGGGTGCCCTTCTGCTTTTCGATCTTCAGGCACT
GTGCTGGATGCAAGGTGGCCGCCTCGATGGCATAGACCACGGAGCAGTCG
GTCGCCTTCTGGAAGATCCGCACGCACTCGTCCATCGGGGCGATGCTGCC
GCACAGCGTCTCTGTGCCTGCGATGAACGCCTTGCCCTGCTTAACCTGCA
GCGGCAGCTGTCCGATGTGGTGGACACCCTCCTCGAGGCCCAGCGCCGAT
ATGGCGTCCGTCACCAGGATCAGGCCCTGCGGATGCGTGCGGTAGGCGAT
CCTCAGTGCCGCCGGATGAGTGTGCACTCCGTCCGAGATGATGCCGAAGT
ACACGGTCCTACCGTGCGGCACTGCGTCCGAGGCCAGCAGTCCCACCAGG
CCGGGATCGCGGTGATGGAACGGCAGCATGGCGTTGAACAGATGCGTGAT
CAGCGTGGCGCCCTGCTGCACGGCCCTCTCTCC
BS13848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PA | 1254 | CG17065-RA | 688..1254 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 850..1416 | 583..17 | 2835 | 100 | Minus |
CG17065-RB | 1598 | CG17065-RB | 824..1390 | 583..17 | 2835 | 100 | Minus |
CG17065-RA | 1556 | CG17065-RA | 782..1348 | 583..17 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20255132..20255516 | 199..583 | 1925 | 100 | Plus |
X | 23542271 | X | 20254900..20255082 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:38:43 has no hits.
BS13848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:54 Download gff for
BS13848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 688..1254 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:31 Download gff for
BS13848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 782..1351 | 13..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:34 Download gff for
BS13848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 782..1351 | 13..583 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for
BS13848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20254897..20255081 | 13..198 | 98 | <- | Plus |
X | 20255132..20255516 | 199..583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:31 Download gff for
BS13848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20125923..20126107 | 13..198 | 98 | <- | Plus |
arm_X | 20126158..20126542 | 199..583 | 100 | | Plus |
BS13848.5prime Sequence
554 bp (465 high quality bases) assembled on 2006-10-13
> BS13848.5prime
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCCTGCGGAGGGTCCGTTTATCAATTCCG
CAGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGG
ACTC
BS13848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PA | 1254 | CG17065-RA | 1..537 | 17..554 | 2625 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 163..699 | 17..554 | 2650 | 99.6 | Plus |
CG17065-RA | 1556 | CG17065-RA | 95..631 | 17..554 | 2650 | 99.6 | Plus |
CG17065-RB | 1598 | CG17065-RB | 95..625 | 17..548 | 2620 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20256773..20257037 | 281..17 | 1325 | 100 | Minus |
X | 23542271 | X | 20255763..20256033 | 549..278 | 1295 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:01:12 has no hits.
BS13848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:55 Download gff for
BS13848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-PA | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:05 Download gff for
BS13848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 90..631 | 9..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:41 Download gff for
BS13848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 90..631 | 9..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:41 Download gff for
BS13848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20255761..20256032 | 279..554 | 97 | <- | Minus |
X | 20256776..20257042 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:05 Download gff for
BS13848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20126787..20127058 | 279..554 | 97 | <- | Minus |
arm_X | 20127802..20128068 | 9..278 | 98 | | Minus |
BS13848.complete Sequence
1286 bp assembled on 2009-08-24
GenBank Submission: KX800169
> BS13848.complete
GAAGTTATCAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGC
CAGAGTCTCCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAG
TTCACCAACTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCT
GTGGGTTCGCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACG
AGCGGACCAAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCG
CCCGGCTACATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTC
GTACGACACGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCC
TGGTCAAGAGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCC
AGCGACAGCTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAA
GGGCGCCGGCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGC
AGAAAAAGGGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGA
CTCAGCACGCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCAT
CACCCTGGCGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGG
TGGAGCGTGGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGC
GACGGAGAGAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTT
CAACGCCATGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGC
TGGCCTCGGACGCAGTGCCGCACGGTAGGACCGTGTACTTCGGCATCATC
TCGGACGGAGTGCACACTCATCCGGCGGCACTGAGGATCGCCTACCGCAC
GCATCCGCAGGGCCTGATCCTGGTGACGGACGCCATATCGGCGCTGGGCC
TCGAGGAGGGTGTCCACCACATCGGACAGCTGCCGCTGCAGGTTAAGCAG
GGCAAGGCGTTCATCGCAGGCACAGAGACGCTGTGCGGCAGCATCGCCCC
GATGGACGAGTGCGTGCGGATCTTCCAGAAGGCGACCGACTGCTCCGTGG
TCTATGCCATCGAGGCGGCCACCTTGCATCCAGCACAGTGCCTGAAGATC
GAAAAGCAGAAGGGCACCCTGGACTTTGGCTCGGACGCGGACTTCGTTCT
CCTGGACGACCAGCTCCGGGTGCTATCCACCTGGATCGCTGGCGTATGTG
TTCATAGGACTGTCAAGTAGAAGCTTTCTAGACCAT
BS13848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1254 | CG17065-PD | 1..1254 | 17..1270 | 6270 | 100 | Plus |
CG17065-RA | 1254 | CG17065-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
CG17065-RB | 1296 | CG17065-PB | 571..1296 | 545..1270 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-RD | 1624 | CG17065-RD | 163..1416 | 17..1270 | 6270 | 100 | Plus |
CG17065-RA | 1556 | CG17065-RA | 95..1348 | 17..1270 | 6270 | 100 | Plus |
CG17065-RB | 1598 | CG17065-RB | 665..1390 | 545..1270 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20255132..20255675 | 1088..545 | 2720 | 100 | Minus |
X | 23542271 | X | 20255763..20256033 | 548..278 | 1355 | 100 | Minus |
X | 23542271 | X | 20256773..20257037 | 281..17 | 1325 | 100 | Minus |
X | 23542271 | X | 20254900..20255082 | 1270..1088 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:28:54 has no hits.
BS13848.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:53 Download gff for
BS13848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1348 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:52 Download gff for
BS13848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1348 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:33 Download gff for
BS13848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17065-RA | 95..1348 | 17..1270 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:33 Download gff for
BS13848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20254900..20255081 | 1089..1270 | 100 | <- | Minus |
X | 20255132..20255672 | 548..1088 | 100 | <- | Minus |
X | 20255764..20256032 | 279..547 | 100 | <- | Minus |
X | 20256776..20257037 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:52 Download gff for
BS13848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20125926..20126107 | 1089..1270 | 100 | <- | Minus |
arm_X | 20126158..20126698 | 548..1088 | 100 | <- | Minus |
arm_X | 20126790..20127058 | 279..547 | 100 | <- | Minus |
arm_X | 20127802..20128063 | 17..278 | 100 | | Minus |
BS13848.pep Sequence
Translation from 16 to 1269
> BS13848.pep
MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDLWVRDG
RIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTET
IEEGVATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGIL
GIHAEGPFINPQKKGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPE
KVTDPEVIGQLVERGITVALGHSMASLSDGERAVQQGATLITHLFNAMLP
FHHRDPGLVGLLASDAVPHGRTVYFGIISDGVHTHPAALRIAYRTHPQGL
ILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLCGSIAPMDECV
RIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQL
RVLSTWIAGVCVHRTVK*
BS13848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17065-PD | 417 | CG17065-PD | 1..417 | 1..417 | 2180 | 100 | Plus |
CG17065-PA | 417 | CG17065-PA | 1..417 | 1..417 | 2180 | 100 | Plus |
CG17065-PB | 431 | CG17065-PB | 1..431 | 1..417 | 2155 | 96.8 | Plus |