Clone Sequence Records
BS13849.complete Sequence
1796 bp assembled on 2009-12-07
GenBank Submission: KX805575
> BS13849.complete
GAAGTTATCAGTCGACATGAGGCTGCTCAAGGAACTGATGCGAGTGGCCA
CCCAACACAGAGCCTTCTACTGCTATGTGCTGCTCAGCGTCTGGATATTC
CTTCTTATAGCGGGAATGTATCGCTACATGGGCAATGTTGAGTCGACTCC
AAGCGGTGGCTCAGTTTTCGGACCCAGTTCGTCTGGCACCGTCAGTTCCT
TGGGCGGCGATAGTTCGCCATCTTCCACTGCCCAGCGATTCGCCAAGTAC
AGAGAACGCTGTGCTCCGTTGGCTCAGCTGCAGCGTTTGGATGATGGCGG
CATCTTGGAGGGTTGGAAGCTTCAGGGCGTGCTCCTGGTCATCAGGCACG
GGGATCGGGGACCCATATCCCACGTTCGCAGTGCTGGCATCAACTGCGGC
GTGAGTGGTGGCTCAGATAACTTGGTCAACAGGTATCGCAGTTTTCTGTA
TAACTCGAGCAGCTCCGCTTCGGGATCAAATCACATGTACTGGAACAAGG
TGGGGCCGTTCCATGGGTTTCCACTGCTGCCGGCCACAGAACGTGGTTGT
CCACTGGGGCAGCTCACCTACAAGGGAATCTCGCAGCTGCTACACGTGGG
CGACATCATGCACCAGGTCTATGCTCATCCACTGGGTCTCCTGCTCAAAC
CGAATCCGAACCGAGCCTCTGTGGAAACGACGCCCCACACGCTTCTTAAT
TCGGATGAAGTGGTGGTCTTCACCACTCGCTATCGTCGCACCTTCCAGTC
CGCATTGGCCATGCTGTTCACCTTGCTTCCGGCGGACAAGTGGCTGGCTT
TGAATGTCCGGGAATCGCATAGCATGGCTTTCTGCTTCGGCGAGTGCAGC
TGTCCTCAGTCGGCTCTGCTGCGAAAACGTCTGGAGGCCATGGGTGATAA
GCAGCTCCTGAAACGTGGCGATGTCCTGGATGTGATGCAGTGGATCGGAG
GCACCATACTGCAGCACACGCCGAATGGCATTAGCAATCCCTTCGAGGTG
GTGGATGCCCTTTTGACAGTTCTATGCCATGACGCCACCTTGCCATGTCG
CAGGAAAAAAGCGCTTTCCACTCCAAAGCCCCTCAGAAAGAACTCCAATC
AGGAACTGGTGGATGTGATCAATATAGATCAGGATGAAACAGCTGCCAAC
TTGATGCAGGAGGCACAAACACAGGTGGAACCCGACTCCCCTGAGGTGGA
AAATGGGAATCCCTCAGTGCAGGCGGATGAAGCTCAAGAGGGCTGCGTCG
AGCCCAGCCACGTGGATACCCTGATGTCCTTTGCGGACGAACTATCGCAA
CGCTCCGCTGGTCACTCGTACTACAAGCTATCCGGATTGCTGCGATCCTA
CGGAATGATCCGTCACATAGTCAGCTACATGCTGAAGATGATCTCTGGCG
ACAGGACGAAGTTTGTCCTGTACTCTGGACACGACTGCACCATGCAGTAT
CTTACAGCTGCCCTGGGAATCATCACCAACCAGGGCCAAACCATAGCCTA
TGCCTCCAGACTAGCATTCGAAGTTTACCGGAGCGACGCTCACACGGATT
ACTACTTCCGGGTGGTGTACAATGGAAAGGATGTCACGCAGCAGATCGAT
TTCTGCGAGGGAGGCAAAAGCCTACGGGTCACCAGGGATTCCAGGGGCAA
CAAAGCCGATCTCTGTCCCATCGAGAACATCATTCGCTTCCTGCACGAAG
ATTACTTCAGTCCGCTGAATGCCACCAATTTTAAGGAAGCCTGTGGCTCT
GTGAATCCCCCAAAAACTGGCGAATTTTAGAAGCTTTCTAGACCAT
BS13849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15385-RB | 1764 | CG15385-PB | 1..1764 | 17..1780 | 8820 | 100 | Plus |
| CG15385-RA | 1764 | CG15385-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15385-RB | 2263 | CG15385-RB | 197..1964 | 17..1784 | 8825 | 99.9 | Plus |
| CG15385-RA | 2635 | CG15385-RA | 197..1964 | 17..1784 | 8825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2210245..2210872 | 1784..1157 | 3125 | 99.8 | Minus |
| 2L | 23513712 | 2L | 2210924..2211510 | 1160..574 | 2935 | 100 | Minus |
| 2L | 23513712 | 2L | 2211771..2212092 | 434..113 | 1610 | 100 | Minus |
| 2L | 23513712 | 2L | 2211576..2211719 | 574..431 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 2212278..2212375 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:08 has no hits.
BS13849.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:12 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 197..1960 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:33 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 197..1960 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:49 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 197..1960 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:19 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 197..1960 | 17..1780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:19 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2210249..2210869 | 1160..1780 | 100 | <- | Minus |
| 2L | 2210925..2211510 | 574..1159 | 100 | <- | Minus |
| 2L | 2211577..2211717 | 433..573 | 100 | <- | Minus |
| 2L | 2211773..2212091 | 114..432 | 100 | <- | Minus |
| 2L | 2212279..2212375 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:33 Download gff for
BS13849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2210249..2210869 | 1160..1780 | 100 | <- | Minus |
| arm_2L | 2210925..2211510 | 574..1159 | 100 | <- | Minus |
| arm_2L | 2211577..2211717 | 433..573 | 100 | <- | Minus |
| arm_2L | 2211773..2212091 | 114..432 | 100 | <- | Minus |
| arm_2L | 2212279..2212375 | 17..113 | 100 | | Minus |
BS13849.5prime Sequence
573 bp (526 high quality bases) assembled on 2006-10-13
> BS13849.5prime
GAAGTTATCAGTCGACATGAGGCTGCTCAAGGAACTGATGCGAGTGGCCA
CCCAACACAGAGCCTTCTACTGCTATGTGCTGCTCAGCGTCTGGATATTC
CTTCTTATAGCGGGAATGTATCGCTACATGGGCAATGTTGAGTCGACTCC
AAGCGGTGGCTCAGTTTTCGGACCCAGTTCGTCTGGCACCGTCAGTTCCT
TGGGCGGCGATAGTTCGCCATCTTCCACTGCCCAGCGATTCGCCAAGTAC
AGAGAACGCTGTGCTCCGTTGGCTCAGCTGCAGCGTTTGGATGATGGCGG
CATCTTGGAGGGTTGGAAGCTTCAGGGCGTGCTCCTGGTCATCAGGCACG
GGGATCGGGGACCCATATCCCACGTTCGCAGTGCTGGCATCAACTGCGGC
GTGAGTGGTGGCTCAGATAACTTGGTCAACAGGTATCGCAGTTTTCTGTA
TAACTCGAGCAGCTCCGCTTCGGGATCAAATCACATGTACTGGAACAAGG
TGGGGCCGTTCCATGGGTTTCCACTGCTGCCGGCCACAGAACGTGGTTGT
CCACTGGGGCAACTCACCTACAA
BS13849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15385-PA | 1764 | CG15385-RA | 1..557 | 17..573 | 2760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15385-RB | 2263 | CG15385-RB | 197..753 | 17..573 | 2770 | 99.8 | Plus |
| CG15385-RA | 2635 | CG15385-RA | 197..753 | 17..573 | 2770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2211771..2212092 | 434..113 | 1610 | 100 | Minus |
| 2L | 23513712 | 2L | 2211577..2211719 | 573..431 | 700 | 99.3 | Minus |
| 2L | 23513712 | 2L | 2212278..2212375 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:00:29 has no hits.
BS13849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:55 Download gff for
BS13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-PA | 1..555 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:25 Download gff for
BS13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 193..751 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:05 Download gff for
BS13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15385-RA | 193..751 | 9..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:05 Download gff for
BS13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2211579..2211717 | 433..571 | 99 | <- | Minus |
| 2L | 2211773..2212091 | 114..432 | 100 | <- | Minus |
| 2L | 2212279..2212379 | 9..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:25 Download gff for
BS13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2211579..2211717 | 433..571 | 99 | <- | Minus |
| arm_2L | 2211773..2212091 | 114..432 | 100 | <- | Minus |
| arm_2L | 2212279..2212379 | 9..113 | 96 | | Minus |
BS13849.pep Sequence
Translation from 16 to 1779
> BS13849.pep
MRLLKELMRVATQHRAFYCYVLLSVWIFLLIAGMYRYMGNVESTPSGGSV
FGPSSSGTVSSLGGDSSPSSTAQRFAKYRERCAPLAQLQRLDDGGILEGW
KLQGVLLVIRHGDRGPISHVRSAGINCGVSGGSDNLVNRYRSFLYNSSSS
ASGSNHMYWNKVGPFHGFPLLPATERGCPLGQLTYKGISQLLHVGDIMHQ
VYAHPLGLLLKPNPNRASVETTPHTLLNSDEVVVFTTRYRRTFQSALAML
FTLLPADKWLALNVRESHSMAFCFGECSCPQSALLRKRLEAMGDKQLLKR
GDVLDVMQWIGGTILQHTPNGISNPFEVVDALLTVLCHDATLPCRRKKAL
STPKPLRKNSNQELVDVINIDQDETAANLMQEAQTQVEPDSPEVENGNPS
VQADEAQEGCVEPSHVDTLMSFADELSQRSAGHSYYKLSGLLRSYGMIRH
IVSYMLKMISGDRTKFVLYSGHDCTMQYLTAALGIITNQGQTIAYASRLA
FEVYRSDAHTDYYFRVVYNGKDVTQQIDFCEGGKSLRVTRDSRGNKADLC
PIENIIRFLHEDYFSPLNATNFKEACGSVNPPKTGEF*
BS13849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15385-PB | 587 | CG15385-PB | 1..587 | 1..587 | 3084 | 100 | Plus |
| CG15385-PA | 587 | CG15385-PA | 1..587 | 1..587 | 3084 | 100 | Plus |
