Clone BS13853 Report

Search the DGRC for BS13853

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptAk6-RA
Protein status:BS13853.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13853.3prime Sequence

558 bp (558 high quality bases) assembled on 2006-10-13

> BS13853.3prime
ATGGTCTAGAAAGCTTTTATTTTCTTTTCCACATACGATACCAGTTTTTG
ACTGTTTTTATGCTTATATGGGCATCTGCCTTTGTTTCGCCCTTAAGTTC
GAATACTATATCTGATTTGTAGGAATCGCGGGCCTCTTCCAAAATGGTTC
CAAAGATCTCGCACTGAATATTGGATGCCAGTTTCTTTTCGTTGTAGTTG
CGCTCCTTCAGACGATCGTAGAGTGTTGTATTGGGACAGGTTACCACGAA
GACGGCTTGAAACCAGCGCTCTGGAAAGAAATCACAGCCATGATACTCGA
CGACGTTGCCCCCCTTTGCCATCAGGGGCTCCAAGTGATCCATCAGCTTT
TCTTCATCCAGAATGGGACAATCGTACTCCTCGTCATATTCCTCTACAAA
ATTTTTCTCCTTGGCGATTTTGGAGCAGTCCAGCCACTCAAACTTTAGTT
CGGAGGCTATACGTTCGCATAAATACGATTTCCCCGCTCCAGGAGTTCCG
GTTATTAGTATGTTGGGCTTGACATCTGGCTCTGGTTCTGACATGTCGAC
TGATAACT

BS13853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8816-PA 528 CG8816-RA 1..528 544..17 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..651 544..15 2650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569074..12569407 15..348 1670 100 Plus
2R 25286936 2R 12569461..12569613 347..499 765 100 Plus
2R 25286936 2R 12569680..12569726 498..544 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:52:30 has no hits.

BS13853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:56 Download gff for BS13853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 17..544 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:48 Download gff for BS13853.3prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..651 15..551 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:28 Download gff for BS13853.3prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..651 15..551 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:28 Download gff for BS13853.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12569074..12569405 15..346 100 <- Plus
2R 12569461..12569612 347..498 100 <- Plus
2R 12569681..12569730 499..551 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:48 Download gff for BS13853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456579..8456910 15..346 100 <- Plus
arm_2R 8456966..8457117 347..498 100 <- Plus
arm_2R 8457186..8457235 499..551 92   Plus

BS13853.5prime Sequence

558 bp (558 high quality bases) assembled on 2006-10-13

> BS13853.5prime
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAATAAAAGCTT
TCTAGACC

BS13853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8816-PA 528 CG8816-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..651 17..546 2650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569074..12569407 546..213 1670 100 Minus
2R 25286936 2R 12569461..12569613 214..62 765 100 Minus
2R 25286936 2R 12569680..12569726 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:42:12 has no hits.

BS13853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:57 Download gff for BS13853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8816-PA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:43 Download gff for BS13853.5prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..651 10..546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:46 Download gff for BS13853.5prime
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 118..651 10..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:46 Download gff for BS13853.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12569074..12569405 215..546 100 <- Minus
2R 12569461..12569612 63..214 100 <- Minus
2R 12569681..12569730 10..62 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:43 Download gff for BS13853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456579..8456910 215..546 100 <- Minus
arm_2R 8456966..8457117 63..214 100 <- Minus
arm_2R 8457186..8457235 10..62 92   Minus

BS13853.complete Sequence

560 bp assembled on 2006-11-01

GenBank Submission: FJ637539

> BS13853.complete
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAATAAAAGCTT
TCTAGACCAT

BS13853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 528 CG8816-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-RA 711 CG8816-RA 122..651 17..546 2650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12569074..12569407 546..213 1670 100 Minus
2R 25286936 2R 12569461..12569613 214..62 765 100 Minus
2R 25286936 2R 12569680..12569726 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:30 has no hits.

BS13853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:20 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:30 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 138..671 10..546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:02 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 122..637 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:20 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8816-RA 138..671 10..546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:47 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
Ak6-RA 122..637 17..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:47 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12569088..12569405 215..532 100 <- Minus
2R 12569461..12569612 63..214 100 <- Minus
2R 12569681..12569726 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:02 Download gff for BS13853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8456593..8456910 215..532 100 <- Minus
arm_2R 8456966..8457117 63..214 100 <- Minus
arm_2R 8457186..8457231 17..62 100   Minus

BS13853.pep Sequence

Translation from 16 to 543

> BS13853.pep
MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV
EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV
VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL
KGETKADAHISIKTVKNWYRMWKRK*

BS13853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ak6-PA 175 CG8816-PA 1..175 1..175 949 100 Plus