Clone Sequence Records
BS13853.3prime Sequence
558 bp (558 high quality bases) assembled on 2006-10-13
> BS13853.3prime
ATGGTCTAGAAAGCTTTTATTTTCTTTTCCACATACGATACCAGTTTTTG
ACTGTTTTTATGCTTATATGGGCATCTGCCTTTGTTTCGCCCTTAAGTTC
GAATACTATATCTGATTTGTAGGAATCGCGGGCCTCTTCCAAAATGGTTC
CAAAGATCTCGCACTGAATATTGGATGCCAGTTTCTTTTCGTTGTAGTTG
CGCTCCTTCAGACGATCGTAGAGTGTTGTATTGGGACAGGTTACCACGAA
GACGGCTTGAAACCAGCGCTCTGGAAAGAAATCACAGCCATGATACTCGA
CGACGTTGCCCCCCTTTGCCATCAGGGGCTCCAAGTGATCCATCAGCTTT
TCTTCATCCAGAATGGGACAATCGTACTCCTCGTCATATTCCTCTACAAA
ATTTTTCTCCTTGGCGATTTTGGAGCAGTCCAGCCACTCAAACTTTAGTT
CGGAGGCTATACGTTCGCATAAATACGATTTCCCCGCTCCAGGAGTTCCG
GTTATTAGTATGTTGGGCTTGACATCTGGCTCTGGTTCTGACATGTCGAC
TGATAACT
BS13853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8816-PA | 528 | CG8816-RA | 1..528 | 544..17 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..651 | 544..15 | 2650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569074..12569407 | 15..348 | 1670 | 100 | Plus |
2R | 25286936 | 2R | 12569461..12569613 | 347..499 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12569680..12569726 | 498..544 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:52:30 has no hits.
BS13853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:56 Download gff for
BS13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 17..544 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:48 Download gff for
BS13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..651 | 15..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:28 Download gff for
BS13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..651 | 15..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:28 Download gff for
BS13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569074..12569405 | 15..346 | 100 | <- | Plus |
2R | 12569461..12569612 | 347..498 | 100 | <- | Plus |
2R | 12569681..12569730 | 499..551 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:48 Download gff for
BS13853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456579..8456910 | 15..346 | 100 | <- | Plus |
arm_2R | 8456966..8457117 | 347..498 | 100 | <- | Plus |
arm_2R | 8457186..8457235 | 499..551 | 92 | | Plus |
BS13853.5prime Sequence
558 bp (558 high quality bases) assembled on 2006-10-13
> BS13853.5prime
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAATAAAAGCTT
TCTAGACC
BS13853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8816-PA | 528 | CG8816-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..651 | 17..546 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569074..12569407 | 546..213 | 1670 | 100 | Minus |
2R | 25286936 | 2R | 12569461..12569613 | 214..62 | 765 | 100 | Minus |
2R | 25286936 | 2R | 12569680..12569726 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:42:12 has no hits.
BS13853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:44:57 Download gff for
BS13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-PA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:43 Download gff for
BS13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..651 | 10..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:46 Download gff for
BS13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 118..651 | 10..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:46 Download gff for
BS13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569074..12569405 | 215..546 | 100 | <- | Minus |
2R | 12569461..12569612 | 63..214 | 100 | <- | Minus |
2R | 12569681..12569730 | 10..62 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:43 Download gff for
BS13853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456579..8456910 | 215..546 | 100 | <- | Minus |
arm_2R | 8456966..8457117 | 63..214 | 100 | <- | Minus |
arm_2R | 8457186..8457235 | 10..62 | 92 | | Minus |
BS13853.complete Sequence
560 bp assembled on 2006-11-01
GenBank Submission: FJ637539
> BS13853.complete
GAAGTTATCAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACA
TACTAATAACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGT
ATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAA
GGAGAAAAATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTC
TGGATGAAGAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGG
GGCAACGTCGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTT
TCAAGCCGTCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTC
TGAAGGAGCGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGC
GAGATCTTTGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGA
TATAGTATTCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCA
TAAAAACAGTCAAAAACTGGTATCGTATGTGGAAAAGAAAATAAAAGCTT
TCTAGACCAT
BS13853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 528 | CG8816-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-RA | 711 | CG8816-RA | 122..651 | 17..546 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12569074..12569407 | 546..213 | 1670 | 100 | Minus |
2R | 25286936 | 2R | 12569461..12569613 | 214..62 | 765 | 100 | Minus |
2R | 25286936 | 2R | 12569680..12569726 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:30 has no hits.
BS13853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:20 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:30 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 138..671 | 10..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:02 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 122..637 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:20 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8816-RA | 138..671 | 10..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:47 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ak6-RA | 122..637 | 17..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:47 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12569088..12569405 | 215..532 | 100 | <- | Minus |
2R | 12569461..12569612 | 63..214 | 100 | <- | Minus |
2R | 12569681..12569726 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:02 Download gff for
BS13853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8456593..8456910 | 215..532 | 100 | <- | Minus |
arm_2R | 8456966..8457117 | 63..214 | 100 | <- | Minus |
arm_2R | 8457186..8457231 | 17..62 | 100 | | Minus |
BS13853.pep Sequence
Translation from 16 to 543
> BS13853.pep
MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFV
EEYDEEYDCPILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFV
VTCPNTTLYDRLKERNYNEKKLASNIQCEIFGTILEEARDSYKSDIVFEL
KGETKADAHISIKTVKNWYRMWKRK*
BS13853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ak6-PA | 175 | CG8816-PA | 1..175 | 1..175 | 949 | 100 | Plus |