Clone BS13858 Report

Search the DGRC for BS13858

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptArpc5-RA
Protein status:BS13858.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13858.3prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS13858.3prime
ATGGTCTAGAAAGCTTCTAGGCGCGATTTGTGTCGGACAGCACGCGGACA
ATGCAGCCCACTCCTCCCTTGGCGAAGGCCTTCTCATGCCACTGCAGCAG
GTGGCCACTGGAGCCCTCCGAGGGGATCTCGAATCCCCGATATATGTACT
TCATCAGCACGTCTATTAGGTCGTTCTGGTCCAAGGTGTCGATGGCCTGG
TCCATTTGCGTCGACTTGATGGACAGCAGCACCCGCAGCGTGATGTTCAG
GGCGTGGTCCTTCACATTCTGGTTCTTGCAGCGCAGCGGGGCATTCTGCA
GCGCACTCAGGAGCGCCTCCACGGATTTTCCCTGCGTCAGCAGCGTCGTA
ATCTCGCTCTCATCCGGACCGGCTGCCGCGCTCTCCACCCCATCATCCTC
CCGGAAGTTGTCCTCATTGTACTGGTCCACATCGATCTTGCGGAACGCGT
TGCTGGACGTGTTTTTGGCCATGTCGACTGATAACT

BS13858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9881-PA 456 p16-ARC-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..534 474..16 2295 100 Minus
Arpc5-RA 785 CG9881-RA 76..534 474..16 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580887 261..16 1230 100 Minus
2L 23513712 2L 2580367..2580582 474..259 1080 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:25:51 has no hits.

BS13858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for BS13858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:32 Download gff for BS13858.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..541 9..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:22 Download gff for BS13858.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..541 9..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:22 Download gff for BS13858.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2580367..2580581 260..474 100 -> Minus
2L 2580644..2580894 9..259 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:32 Download gff for BS13858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580367..2580581 260..474 100 -> Minus
arm_2L 2580644..2580894 9..259 98   Minus

BS13858.5prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS13858.5prime
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCTAGAAGCTTTCTAGACC

BS13858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9881-PA 456 p16-ARC-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..534 15..473 2295 100 Plus
Arpc5-RA 785 CG9881-RA 76..534 15..473 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580887 228..473 1230 100 Plus
2L 23513712 2L 2580367..2580582 15..230 1080 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:10:35 has no hits.

BS13858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for BS13858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9881-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:18 Download gff for BS13858.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..541 15..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:10 Download gff for BS13858.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 76..541 15..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:10 Download gff for BS13858.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2580644..2580894 230..480 98   Plus
2L 2580367..2580581 15..229 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:18 Download gff for BS13858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580367..2580581 15..229 100 -> Plus
arm_2L 2580644..2580894 230..480 98   Plus

BS13858.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ637540

> BS13858.complete
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCTAGAAGCTTTCTAGACCAT

BS13858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 456 CG9881-PB 1..456 17..472 2280 100 Plus
Arpc5-RA 456 CG9881-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-RB 1070 CG9881-RB 76..534 15..473 2295 100 Plus
Arpc5-RA 785 CG9881-RA 76..534 15..473 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2580642..2580887 228..473 1230 100 Plus
2L 23513712 2L 2580367..2580582 15..230 1080 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:15:05 has no hits.

BS13858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:45 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:40 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 77..542 15..480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:58 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 78..533 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:46 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
p16-ARC-RA 77..542 15..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:40 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc5-RA 78..533 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:40 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2580369..2580581 17..229 100 -> Plus
2L 2580644..2580886 230..472 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:58 Download gff for BS13858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2580369..2580581 17..229 100 -> Plus
arm_2L 2580644..2580886 230..472 100   Plus

BS13858.pep Sequence

Translation from 16 to 471

> BS13858.pep
MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKS
VEALLSALQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQN
DLIDVLMKYIYRGFEIPSEGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR
A*

BS13858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc5-PB 151 CG9881-PB 1..151 1..151 767 100 Plus
Arpc5-PA 151 CG9881-PA 1..151 1..151 767 100 Plus