Clone Sequence Records
BS13858.3prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS13858.3prime
ATGGTCTAGAAAGCTTCTAGGCGCGATTTGTGTCGGACAGCACGCGGACA
ATGCAGCCCACTCCTCCCTTGGCGAAGGCCTTCTCATGCCACTGCAGCAG
GTGGCCACTGGAGCCCTCCGAGGGGATCTCGAATCCCCGATATATGTACT
TCATCAGCACGTCTATTAGGTCGTTCTGGTCCAAGGTGTCGATGGCCTGG
TCCATTTGCGTCGACTTGATGGACAGCAGCACCCGCAGCGTGATGTTCAG
GGCGTGGTCCTTCACATTCTGGTTCTTGCAGCGCAGCGGGGCATTCTGCA
GCGCACTCAGGAGCGCCTCCACGGATTTTCCCTGCGTCAGCAGCGTCGTA
ATCTCGCTCTCATCCGGACCGGCTGCCGCGCTCTCCACCCCATCATCCTC
CCGGAAGTTGTCCTCATTGTACTGGTCCACATCGATCTTGCGGAACGCGT
TGCTGGACGTGTTTTTGGCCATGTCGACTGATAACT
BS13858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9881-PA | 456 | p16-ARC-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..534 | 474..16 | 2295 | 100 | Minus |
Arpc5-RA | 785 | CG9881-RA | 76..534 | 474..16 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580887 | 261..16 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 2580367..2580582 | 474..259 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:25:51 has no hits.
BS13858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for
BS13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:32 Download gff for
BS13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..541 | 9..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:22 Download gff for
BS13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..541 | 9..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:22 Download gff for
BS13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580367..2580581 | 260..474 | 100 | -> | Minus |
2L | 2580644..2580894 | 9..259 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:32 Download gff for
BS13858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580367..2580581 | 260..474 | 100 | -> | Minus |
arm_2L | 2580644..2580894 | 9..259 | 98 | | Minus |
BS13858.5prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS13858.5prime
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCTAGAAGCTTTCTAGACC
BS13858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9881-PA | 456 | p16-ARC-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..534 | 15..473 | 2295 | 100 | Plus |
Arpc5-RA | 785 | CG9881-RA | 76..534 | 15..473 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580887 | 228..473 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 2580367..2580582 | 15..230 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:35 has no hits.
BS13858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for
BS13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9881-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:18 Download gff for
BS13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..541 | 15..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:10 Download gff for
BS13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 76..541 | 15..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:10 Download gff for
BS13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580644..2580894 | 230..480 | 98 | | Plus |
2L | 2580367..2580581 | 15..229 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:18 Download gff for
BS13858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580367..2580581 | 15..229 | 100 | -> | Plus |
arm_2L | 2580644..2580894 | 230..480 | 98 | | Plus |
BS13858.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637540
> BS13858.complete
GAAGTTATCAGTCGACATGGCCAAAAACACGTCCAGCAACGCGTTCCGCA
AGATCGATGTGGACCAGTACAATGAGGACAACTTCCGGGAGGATGATGGG
GTGGAGAGCGCGGCAGCCGGTCCGGATGAGAGCGAGATTACGACGCTGCT
GACGCAGGGAAAATCCGTGGAGGCGCTCCTGAGTGCGCTGCAGAATGCCC
CGCTGCGCTGCAAGAACCAGAATGTGAAGGACCACGCCCTGAACATCACG
CTGCGGGTGCTGCTGTCCATCAAGTCGACGCAAATGGACCAGGCCATCGA
CACCTTGGACCAGAACGACCTAATAGACGTGCTGATGAAGTACATATATC
GGGGATTCGAGATCCCCTCGGAGGGCTCCAGTGGCCACCTGCTGCAGTGG
CATGAGAAGGCCTTCGCCAAGGGAGGAGTGGGCTGCATTGTCCGCGTGCT
GTCCGACACAAATCGCGCCTAGAAGCTTTCTAGACCAT
BS13858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 456 | CG9881-PB | 1..456 | 17..472 | 2280 | 100 | Plus |
Arpc5-RA | 456 | CG9881-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-RB | 1070 | CG9881-RB | 76..534 | 15..473 | 2295 | 100 | Plus |
Arpc5-RA | 785 | CG9881-RA | 76..534 | 15..473 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2580642..2580887 | 228..473 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 2580367..2580582 | 15..230 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:15:05 has no hits.
BS13858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:45 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:40 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 77..542 | 15..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:58 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 78..533 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:46 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p16-ARC-RA | 77..542 | 15..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:40 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc5-RA | 78..533 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:40 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2580369..2580581 | 17..229 | 100 | -> | Plus |
2L | 2580644..2580886 | 230..472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:58 Download gff for
BS13858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2580369..2580581 | 17..229 | 100 | -> | Plus |
arm_2L | 2580644..2580886 | 230..472 | 100 | | Plus |
BS13858.pep Sequence
Translation from 16 to 471
> BS13858.pep
MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKS
VEALLSALQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQN
DLIDVLMKYIYRGFEIPSEGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR
A*
BS13858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc5-PB | 151 | CG9881-PB | 1..151 | 1..151 | 767 | 100 | Plus |
Arpc5-PA | 151 | CG9881-PA | 1..151 | 1..151 | 767 | 100 | Plus |