Clone BS13859 Report

Search the DGRC for BS13859

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTango14-RA
Protein status:BS13859.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13859.3prime Sequence

662 bp (567 high quality bases) assembled on 2006-10-13

> BS13859.3prime
ATGGTCTAGAAAGCTTCTACGTGCCCCACCGCTGCTCGCACCGCGAGTAC
TTGCACAGGATGCTGGCGAACGTCTCCACGTCGAAGTGGCGTCCGCTGGG
ATGCGTGTGGAACTCGGTGAAGCGCGCGTGCCAGGGAAGCAGGCCGTAGG
TGCACGTCTGCCGGGCGAACACGATGCCCAGCTCCGGCTCCGGGGCCTCG
AACCCGAGTCGCTTGCTCAGCATGTCGCTGATCTGCTCCGTCAGCGCTTC
GCGCTTCTGCTTAAGTAGGCTCTGCACCAACTCCGTCTTACTGTCTTCGT
ACAACTCGCGGCAGACGTCGGCGATCAGGGCATGGCCGTCGGAGGCGCTG
ATTTGATGGAGCTGCAGTTGAGGGGAATGTGAACCGTTCACATAACCATT
TGTCTTTTGTCCGTTTTTGGGCTGGTTCTCCAGTTTGCTGGGACTGGCTA
CGGGTGGCCACTTTAAGCAGCTGCCCGTGTCCGCGTTGGTGGATCGACAG
AGATCGGCCATGTCCACGTATCCCCTGCCTTTCGTCCGCCTGTCGTACAG
GCTGACGTGTTTGATGCCCACGTCCGGGGCAAAGTCGAAGATCCTGCTGA
GGAGCACCGCATCCACGCCGGCCTCTACGGGGGAGAATAACCAGGACCAG
ATGCTGCGGCGT

BS13859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4775-PA 837 l(2)k00619-RA 218..837 636..17 3050 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 434..1078 662..17 3175 99.5 Minus
Tango14-RA 1272 CG4775-RA 508..1152 662..17 3175 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1159753..1160100 364..17 1740 100 Minus
2L 23513712 2L 1159168..1159467 662..362 1425 99 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:41 has no hits.

BS13859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for BS13859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 193..837 17..662 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:14 Download gff for BS13859.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 508..1154 13..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:39 Download gff for BS13859.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 508..1154 13..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:39 Download gff for BS13859.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1159168..1159467 362..662 99 -> Minus
2L 1159756..1160102 13..361 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:14 Download gff for BS13859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1159168..1159467 362..662 99 -> Minus
arm_2L 1159756..1160102 13..361 99   Minus

BS13859.5prime Sequence

706 bp (631 high quality bases) assembled on 2006-10-13

> BS13859.5prime
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCC

BS13859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4775-PA 837 l(2)k00619-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 240..931 15..706 3460 100 Plus
Tango14-RA 1272 CG4775-RA 314..1005 15..706 3460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158974..1159467 15..508 2470 100 Plus
2L 23513712 2L 1159753..1159953 506..706 1005 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:26:25 has no hits.

BS13859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:01 Download gff for BS13859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4775-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:39 Download gff for BS13859.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1005 15..706 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:27 Download gff for BS13859.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 314..1005 15..706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:27 Download gff for BS13859.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1158974..1159467 15..508 100 -> Plus
2L 1159756..1159953 509..706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:39 Download gff for BS13859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1158974..1159467 15..508 100 -> Plus
arm_2L 1159756..1159953 509..706 100   Plus

BS13859.complete Sequence

869 bp assembled on 2006-11-01

GenBank Submission: FJ637541

> BS13859.complete
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCGGTGGGGCACG
TAGAAGCTTTCTAGACCAT

BS13859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 837 CG4775-PB 1..837 17..853 4185 100 Plus
Tango14-RA 837 CG4775-PA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-RB 1198 CG4775-RB 240..1078 15..853 4195 100 Plus
Tango14-RA 1272 CG4775-RA 314..1152 15..853 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1158974..1159467 15..508 2470 100 Plus
2L 23513712 2L 1159753..1160100 506..853 1740 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:42:28 has no hits.

BS13859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:46 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:08 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 296..1136 15..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:14 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 316..1152 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:47 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 296..1136 15..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:28 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
Tango14-RA 316..1152 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:28 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1158976..1159467 17..508 100 -> Plus
2L 1159756..1160100 509..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:14 Download gff for BS13859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1158976..1159467 17..508 100 -> Plus
arm_2L 1159756..1160100 509..853 100   Plus

BS13859.pep Sequence

Translation from 16 to 852

> BS13859.pep
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGT*

BS13859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tango14-PB 278 CG4775-PB 1..278 1..278 1459 100 Plus
Tango14-PA 278 CG4775-PA 1..278 1..278 1459 100 Plus