Clone Sequence Records
BS13859.3prime Sequence
662 bp (567 high quality bases) assembled on 2006-10-13
> BS13859.3prime
ATGGTCTAGAAAGCTTCTACGTGCCCCACCGCTGCTCGCACCGCGAGTAC
TTGCACAGGATGCTGGCGAACGTCTCCACGTCGAAGTGGCGTCCGCTGGG
ATGCGTGTGGAACTCGGTGAAGCGCGCGTGCCAGGGAAGCAGGCCGTAGG
TGCACGTCTGCCGGGCGAACACGATGCCCAGCTCCGGCTCCGGGGCCTCG
AACCCGAGTCGCTTGCTCAGCATGTCGCTGATCTGCTCCGTCAGCGCTTC
GCGCTTCTGCTTAAGTAGGCTCTGCACCAACTCCGTCTTACTGTCTTCGT
ACAACTCGCGGCAGACGTCGGCGATCAGGGCATGGCCGTCGGAGGCGCTG
ATTTGATGGAGCTGCAGTTGAGGGGAATGTGAACCGTTCACATAACCATT
TGTCTTTTGTCCGTTTTTGGGCTGGTTCTCCAGTTTGCTGGGACTGGCTA
CGGGTGGCCACTTTAAGCAGCTGCCCGTGTCCGCGTTGGTGGATCGACAG
AGATCGGCCATGTCCACGTATCCCCTGCCTTTCGTCCGCCTGTCGTACAG
GCTGACGTGTTTGATGCCCACGTCCGGGGCAAAGTCGAAGATCCTGCTGA
GGAGCACCGCATCCACGCCGGCCTCTACGGGGGAGAATAACCAGGACCAG
ATGCTGCGGCGT
BS13859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4775-PA | 837 | l(2)k00619-RA | 218..837 | 636..17 | 3050 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 434..1078 | 662..17 | 3175 | 99.5 | Minus |
Tango14-RA | 1272 | CG4775-RA | 508..1152 | 662..17 | 3175 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1159753..1160100 | 364..17 | 1740 | 100 | Minus |
2L | 23513712 | 2L | 1159168..1159467 | 662..362 | 1425 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:41 has no hits.
BS13859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:00 Download gff for
BS13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 193..837 | 17..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:14 Download gff for
BS13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 508..1154 | 13..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:39 Download gff for
BS13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 508..1154 | 13..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:39 Download gff for
BS13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1159168..1159467 | 362..662 | 99 | -> | Minus |
2L | 1159756..1160102 | 13..361 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:14 Download gff for
BS13859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1159168..1159467 | 362..662 | 99 | -> | Minus |
arm_2L | 1159756..1160102 | 13..361 | 99 | | Minus |
BS13859.5prime Sequence
706 bp (631 high quality bases) assembled on 2006-10-13
> BS13859.5prime
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCC
BS13859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4775-PA | 837 | l(2)k00619-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 240..931 | 15..706 | 3460 | 100 | Plus |
Tango14-RA | 1272 | CG4775-RA | 314..1005 | 15..706 | 3460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1158974..1159467 | 15..508 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 1159753..1159953 | 506..706 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:26:25 has no hits.
BS13859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:01 Download gff for
BS13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4775-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:39 Download gff for
BS13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1005 | 15..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:27 Download gff for
BS13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 314..1005 | 15..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:27 Download gff for
BS13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1158974..1159467 | 15..508 | 100 | -> | Plus |
2L | 1159756..1159953 | 509..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:39 Download gff for
BS13859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1158974..1159467 | 15..508 | 100 | -> | Plus |
arm_2L | 1159756..1159953 | 509..706 | 100 | | Plus |
BS13859.complete Sequence
869 bp assembled on 2006-11-01
GenBank Submission: FJ637541
> BS13859.complete
GAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGA
TCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAG
CGACTGAATGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGC
GGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGT
TGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAGATGCC
GGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGT
GGGCATCAAACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGAT
ACGTGGACATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGC
TGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCC
CAAAAACGGACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTC
AACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCATGCCCTGATCGCC
GACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAG
CCTACTTAAGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGC
TGAGCAAGCGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTG
TTCGCCCGGCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTT
CACCGAGTTCCACACGCATCCCAGCGGACGCCACTTCGACGTGGAGACGT
TCGCCAGCATCCTGTGCAAGTACTCGCGGTGCGAGCAGCGGTGGGGCACG
TAGAAGCTTTCTAGACCAT
BS13859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 837 | CG4775-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
Tango14-RA | 837 | CG4775-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-RB | 1198 | CG4775-RB | 240..1078 | 15..853 | 4195 | 100 | Plus |
Tango14-RA | 1272 | CG4775-RA | 314..1152 | 15..853 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1158974..1159467 | 15..508 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 1159753..1160100 | 506..853 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:28 has no hits.
BS13859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:46 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:08 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 296..1136 | 15..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:14 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 316..1152 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:47 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 296..1136 | 15..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:28 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango14-RA | 316..1152 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:28 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1158976..1159467 | 17..508 | 100 | -> | Plus |
2L | 1159756..1160100 | 509..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:14 Download gff for
BS13859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1158976..1159467 | 17..508 | 100 | -> | Plus |
arm_2L | 1159756..1160100 | 509..853 | 100 | | Plus |
BS13859.pep Sequence
Translation from 16 to 852
> BS13859.pep
MIEVLCLLLGRILLLLVGGYELMWRLRERLNALAVRSYDLWRSKAAREAH
ERRVLADCRSQLTKTPQHLVLVISPVDAGVDAVLLSRIFDFALDVGIKHV
SLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQK
TNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQK
REALTEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFHT
HPSGRHFDVETFASILCKYSRCEQRWGT*
BS13859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango14-PB | 278 | CG4775-PB | 1..278 | 1..278 | 1459 | 100 | Plus |
Tango14-PA | 278 | CG4775-PA | 1..278 | 1..278 | 1459 | 100 | Plus |