Clone Sequence Records
BS13865.complete Sequence
1271 bp assembled on 2009-12-07
GenBank Submission: KX806389
> BS13865.complete
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGCTTGGGTGGCCGGC
GGATGATGTATTTCCACTCTCTGTCCAGCGAGTGGCAAATGGCCATTCCG
TTGGATGTGGTCAACAACGGCAGCAACTGGCGGCTGAACGATGTGAGCGC
TGCCTTGGATCAGTTCCAGTTGCTGGGCAAGCGGGGAAGTCAATGCGTTG
CGGCGGCCATGAGCGAGTCCGGCTTTCTGATCTGCGGCCTGGTCCAGCCG
GCCAGCCTTTTGGCCTGGAACATTCGCACCGGCTACAGCCATCAGAATCT
GGTCATGCTGGTGGAGGATGAGCAGCGACTGCAGTTCGCCAGTGGACTCA
AGATAGTGCGCAACCACGAGGGCAAGGAGGAACTGTGGGTGCTGTCGAAT
CGGCTGCAGAAAGCCTTCGGAGCGGGTCTGGACTACAAGGAGATAAACTT
TCGCATACAGAAGTGCGGTGTTCAGGAGCTGCTCAGCGGCAGGCCTTGCA
ACTGAAAGCTTTCTAGACCAT
BS13865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1239 | CG9891-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 62..1301 | 16..1255 | 6200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381509..23382551 | 213..1255 | 5215 | 100 | Plus |
2R | 25286936 | 2R | 23381258..23381454 | 16..212 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:51:01 has no hits.
BS13865.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:10 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 61..1298 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:30 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 63..1300 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:47 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 61..1298 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:15 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 63..1300 | 17..1254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:15 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381259..23381454 | 17..212 | 100 | -> | Plus |
2R | 23381509..23382550 | 213..1254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:30 Download gff for
BS13865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19268782..19268977 | 17..212 | 100 | -> | Plus |
arm_2R | 19269032..19270073 | 213..1254 | 100 | | Plus |
BS13865.3prime Sequence
639 bp (563 high quality bases) assembled on 2006-10-13
> BS13865.3prime
ATGGTCTAGAAAGCTTTCAGTTGCAAGGCCTGCCGCTGAGCAGCTCCTGA
ACACCGCACTTCTGTATGCGAAAGTTTATCTCCTTGTAGTCCAGACCCGC
TCCGAAGGCTTTCTGCAGCCGATTCGACAGCACCCACAGTTCCTCCTTGC
CCTCGTGGTTGCGCACTATCTTGAGTCCACTGGCGAACTGCAGTCGCTGC
TCATCCTCCACCAGCATGACCAGATTCTGATGGCTGTAGCCGGTGCGAAT
GTTCCAGGCCAAAAGGCTGGCCGGCTGGACCAGGCCGCAGATCAGAAAGC
CGGACTCGCTCATGGCCGCCGCAACGCATTGACTTCCCCGCTTGCCCAGC
AACTGGAACTGATCCAAGGCAGCGCTCACATCGTTCAGCCGCCAGTTGCT
GCCGTTGTTGACCACATCCAACGGAATGGCCATTTGCCACTCGCTGGACA
GAGAGTGGAAATACATCATCCGCCGGCCACCCAAGCCGTGGGGCGTTAGA
GTGGTAGACACCGTGCCGTCCCACAGCTGGAAGCTCTCGCCTGCTATCGT
GAATGTGCCGAAGTCTGGATGAGGATACGTAAACTTGTTCTCAATCCGCC
ACGACTGCTGGGCTGCCACGTCATACACCCACAATGCCG
BS13865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9891-PA | 1239 | yellow-d2-RA | 618..1239 | 639..17 | 3075 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 680..1301 | 639..17 | 3090 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381939..23382551 | 629..17 | 3065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:53:43 has no hits.
BS13865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:05 Download gff for
BS13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 618..1239 | 17..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:46 Download gff for
BS13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 680..1308 | 11..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:15 Download gff for
BS13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 680..1308 | 11..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:15 Download gff for
BS13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381930..23382558 | 11..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:46 Download gff for
BS13865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19269453..19270081 | 11..639 | 99 | | Minus |
BS13865.5prime Sequence
570 bp (530 high quality bases) assembled on 2006-10-13
> BS13865.5prime
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCAC
BS13865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9891-PA | 1239 | yellow-d2-RA | 1..554 | 17..570 | 2770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-RA | 1341 | CG9891-RA | 62..616 | 16..570 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23381509..23381866 | 213..570 | 1790 | 100 | Plus |
2R | 25286936 | 2R | 23381258..23381454 | 16..212 | 985 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1743..1806 | 501..561 | 106 | 65.6 | Plus |
BS13865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for
BS13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9891-PA | 1..554 | 17..570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:36:09 Download gff for
BS13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 55..616 | 7..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:08 Download gff for
BS13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-d2-RA | 55..616 | 7..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:08 Download gff for
BS13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23381251..23381454 | 7..212 | 98 | -> | Plus |
2R | 23381509..23381866 | 213..570 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:36:09 Download gff for
BS13865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19268774..19268977 | 7..212 | 98 | -> | Plus |
arm_2R | 19269032..19269389 | 213..570 | 100 | | Plus |
BS13865.pep Sequence
Translation from 16 to 1254
> BS13865.pep
MERWIVFGVCCWCWLAASAQALESVFGAYNLELEFPSPQERQRALRDGLY
DPGSVIPIDVDVYYKHGDATPSIFVTIPRFAKGVPYSLAYVTNEMRPNGT
LLQAYPSYEWHKSHGADCNGLTSVYRTQIDECGRMWILDSGEIDFIQHCP
PQLYAIDLESGKVAHQYKMPKRLYKEGVSRFVTPTVELDPHNCDVGFVYM
ADSIGDGIVVYDVAAQQSWRIENKFTYPHPDFGTFTIAGESFQLWDGTVS
TTLTPHGLGGRRMMYFHSLSSEWQMAIPLDVVNNGSNWRLNDVSAALDQF
QLLGKRGSQCVAAAMSESGFLICGLVQPASLLAWNIRTGYSHQNLVMLVE
DEQRLQFASGLKIVRNHEGKEELWVLSNRLQKAFGAGLDYKEINFRIQKC
GVQELLSGRPCN*
BS13865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-d2-PA | 412 | CG9891-PA | 1..412 | 1..412 | 2224 | 100 | Plus |
yellow-e2-PB | 435 | CG17044-PB | 44..434 | 25..411 | 1123 | 53.3 | Plus |
yellow-d-PA | 432 | CG9889-PA | 43..416 | 31..408 | 769 | 41.4 | Plus |
yellow-e3-PA | 409 | CG17045-PA | 32..397 | 44..411 | 581 | 35.1 | Plus |
yellow-h-PA | 463 | CG1629-PA | 49..441 | 18..412 | 463 | 29 | Plus |