Clone BS13865 Report

Search the DGRC for BS13865

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-d2-RA
Protein status:BS13865.pep: full length peptide match
Sequenced Size:1271

Clone Sequence Records

BS13865.complete Sequence

1271 bp assembled on 2009-12-07

GenBank Submission: KX806389

> BS13865.complete
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGCACAACTGCGATGT
GGGATTCGTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATG
ACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAAGTTTACGTATCCT
CATCCAGACTTCGGCACATTCACGATAGCAGGCGAGAGCTTCCAGCTGTG
GGACGGCACGGTGTCTACCACTCTAACGCCCCACGGCTTGGGTGGCCGGC
GGATGATGTATTTCCACTCTCTGTCCAGCGAGTGGCAAATGGCCATTCCG
TTGGATGTGGTCAACAACGGCAGCAACTGGCGGCTGAACGATGTGAGCGC
TGCCTTGGATCAGTTCCAGTTGCTGGGCAAGCGGGGAAGTCAATGCGTTG
CGGCGGCCATGAGCGAGTCCGGCTTTCTGATCTGCGGCCTGGTCCAGCCG
GCCAGCCTTTTGGCCTGGAACATTCGCACCGGCTACAGCCATCAGAATCT
GGTCATGCTGGTGGAGGATGAGCAGCGACTGCAGTTCGCCAGTGGACTCA
AGATAGTGCGCAACCACGAGGGCAAGGAGGAACTGTGGGTGCTGTCGAAT
CGGCTGCAGAAAGCCTTCGGAGCGGGTCTGGACTACAAGGAGATAAACTT
TCGCATACAGAAGTGCGGTGTTCAGGAGCTGCTCAGCGGCAGGCCTTGCA
ACTGAAAGCTTTCTAGACCAT

BS13865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1239 CG9891-PA 1..1239 17..1255 6195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 62..1301 16..1255 6200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381509..23382551 213..1255 5215 100 Plus
2R 25286936 2R 23381258..23381454 16..212 985 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:51:01 has no hits.

BS13865.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:10 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 61..1298 17..1254 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:30 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 63..1300 17..1254 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:47 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 61..1298 17..1254 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:15 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 63..1300 17..1254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:15 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23381259..23381454 17..212 100 -> Plus
2R 23381509..23382550 213..1254 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:30 Download gff for BS13865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19268782..19268977 17..212 100 -> Plus
arm_2R 19269032..19270073 213..1254 100   Plus

BS13865.3prime Sequence

639 bp (563 high quality bases) assembled on 2006-10-13

> BS13865.3prime
ATGGTCTAGAAAGCTTTCAGTTGCAAGGCCTGCCGCTGAGCAGCTCCTGA
ACACCGCACTTCTGTATGCGAAAGTTTATCTCCTTGTAGTCCAGACCCGC
TCCGAAGGCTTTCTGCAGCCGATTCGACAGCACCCACAGTTCCTCCTTGC
CCTCGTGGTTGCGCACTATCTTGAGTCCACTGGCGAACTGCAGTCGCTGC
TCATCCTCCACCAGCATGACCAGATTCTGATGGCTGTAGCCGGTGCGAAT
GTTCCAGGCCAAAAGGCTGGCCGGCTGGACCAGGCCGCAGATCAGAAAGC
CGGACTCGCTCATGGCCGCCGCAACGCATTGACTTCCCCGCTTGCCCAGC
AACTGGAACTGATCCAAGGCAGCGCTCACATCGTTCAGCCGCCAGTTGCT
GCCGTTGTTGACCACATCCAACGGAATGGCCATTTGCCACTCGCTGGACA
GAGAGTGGAAATACATCATCCGCCGGCCACCCAAGCCGTGGGGCGTTAGA
GTGGTAGACACCGTGCCGTCCCACAGCTGGAAGCTCTCGCCTGCTATCGT
GAATGTGCCGAAGTCTGGATGAGGATACGTAAACTTGTTCTCAATCCGCC
ACGACTGCTGGGCTGCCACGTCATACACCCACAATGCCG

BS13865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9891-PA 1239 yellow-d2-RA 618..1239 639..17 3075 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 680..1301 639..17 3090 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381939..23382551 629..17 3065 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:53:43 has no hits.

BS13865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:05 Download gff for BS13865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 618..1239 17..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:46 Download gff for BS13865.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 680..1308 11..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:15 Download gff for BS13865.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 680..1308 11..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:15 Download gff for BS13865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23381930..23382558 11..639 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:46 Download gff for BS13865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19269453..19270081 11..639 99   Minus

BS13865.5prime Sequence

570 bp (530 high quality bases) assembled on 2006-10-13

> BS13865.5prime
GAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTT
GGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCC
TACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCT
GAGAGATGGACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACG
TCTACTACAAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCG
CGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAAT
GCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACA
AATCCCACGGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAG
ATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTT
CATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAA
AAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTG
AGTCGCTTTGTCACGCCCAC

BS13865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9891-PA 1239 yellow-d2-RA 1..554 17..570 2770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-RA 1341 CG9891-RA 62..616 16..570 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23381509..23381866 213..570 1790 100 Plus
2R 25286936 2R 23381258..23381454 16..212 985 100 Plus
Blast to na_te.dros performed 2015-02-10 15:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1743..1806 501..561 106 65.6 Plus

BS13865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for BS13865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9891-PA 1..554 17..570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:36:09 Download gff for BS13865.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 55..616 7..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:08 Download gff for BS13865.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-d2-RA 55..616 7..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:08 Download gff for BS13865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23381251..23381454 7..212 98 -> Plus
2R 23381509..23381866 213..570 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:36:09 Download gff for BS13865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19268774..19268977 7..212 98 -> Plus
arm_2R 19269032..19269389 213..570 100   Plus

BS13865.pep Sequence

Translation from 16 to 1254

> BS13865.pep
MERWIVFGVCCWCWLAASAQALESVFGAYNLELEFPSPQERQRALRDGLY
DPGSVIPIDVDVYYKHGDATPSIFVTIPRFAKGVPYSLAYVTNEMRPNGT
LLQAYPSYEWHKSHGADCNGLTSVYRTQIDECGRMWILDSGEIDFIQHCP
PQLYAIDLESGKVAHQYKMPKRLYKEGVSRFVTPTVELDPHNCDVGFVYM
ADSIGDGIVVYDVAAQQSWRIENKFTYPHPDFGTFTIAGESFQLWDGTVS
TTLTPHGLGGRRMMYFHSLSSEWQMAIPLDVVNNGSNWRLNDVSAALDQF
QLLGKRGSQCVAAAMSESGFLICGLVQPASLLAWNIRTGYSHQNLVMLVE
DEQRLQFASGLKIVRNHEGKEELWVLSNRLQKAFGAGLDYKEINFRIQKC
GVQELLSGRPCN*

BS13865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-d2-PA 412 CG9891-PA 1..412 1..412 2224 100 Plus
yellow-e2-PB 435 CG17044-PB 44..434 25..411 1123 53.3 Plus
yellow-d-PA 432 CG9889-PA 43..416 31..408 769 41.4 Plus
yellow-e3-PA 409 CG17045-PA 32..397 44..411 581 35.1 Plus
yellow-h-PA 463 CG1629-PA 49..441 18..412 463 29 Plus