Clone Sequence Records
BS13866.complete Sequence
1520 bp assembled on 2009-12-07
GenBank Submission: KX804832
> BS13866.complete
GAAGTTATCAGTCGACATGGGCACAGAAACCAAGAGCAACAGTTACACAG
GACAGATTTCAACAAGTGGCGGCAACCCCAAAGTGATGAAAGATTCTTTA
TCCTTAGTTCGTCAGACGGTCAATCAGCAAACGCTATCGCTATCGCAATC
GAACCAGGTCCAGAACCAATTGAATTCACATTCGAATTCCAATTCGTATC
CAAATCCAAGCGGGAGCGAAAACAAAAACGAAAACGAACAAAATTCGCGC
GATATTCGAGCCAAACCGGAGGATAAATCCAGAAAAGAGGCAATTGTACC
ATTTGTACCCATATTTGTTGAGGAGGCCGACGTAATTCAAGGGGCCAAGG
AACTGTTGAAGGTTATACGACCGACCTGGGACCTCAGCCACGTCGAGTTT
AAGAGTTTTACCGATGGCATCACAAACAAACTGGTCGGATGTTTTCATAA
GGAGATCTCCAAACTGAACGATGAGAACGGCGGATCGTATTTACCTATCA
AGACGCAGGGTTTGTCGCCCGTTCAGTCCGAGGATCCAGTCATCATTGAG
AAGGAGGACGATGATGAGTTCACAGACGATCGGGCAGCGGACGACGGGTC
ACCTGTACAGTACTCCGATAACGTAGTGCTCGTCAGGATATACGGTAACA
AAACGGACCTACTGATAGATCGCAAGGCGGAGACGCAAAACTTTCTTCTA
CTGCATACGTATGGGCTAGCGCCATCGCTGTATGCCACGTTCAAGAACGG
TCTCGTCTACGAATACGTACCTGGAACCACCCTGAATACGGACAGTGTGC
TCTGTCCAGAAATTTGGCCCTTGGTCGCCCGTCGCATGGCCGAGATGCAT
CGCAAGGTGAGAAAGCACGGGGATAGTTCGGCGACCAAACCCATGCCGAT
GATTTGGAAGAAGACGCAGAGCTTTCTTGATTTAGTACCTGAACGTTTTA
GTGATGCTGAAAAACACAAAAGAGTGAAAGAAACGTTTCTACCTATCGGC
CGCCTGCGCGAGGAGTTCAACAAGCTATATGAATACCTCGAGGCTCTGGA
CAGTCCGATTGTCTTCTCCCACAACGATCTTCTGCTGGGAAATGTGATCT
ATACGCAGAGCCTGAATACGGTGAACTTCATCGACTACGAGTATGCCGAT
TACAATTTCCAGGCCTTCGACATTGGCAACCACTTTGCGGAGATGTGCGG
CGTGGATGAGGTCGACTATTCGCGCTATCCGAAGCGCGAGTTCCAGCTCC
AGTGGCTGAGGGTCTACCTTGAGGAGTACCTACAGCGCAGCAACATTCAA
AACGACGAAGTCGAACTGCTCTATGTCCAGGTCAATCAGTTTGCGCTGGC
ATCGCATATCTTTTGGACGGTGTGGTCCCTGTTGCAAGCCGAGCATTCCA
CTATCGATTTCGACTACGTAGGCTATGCATTTCTTCGTTATAATGAGTAC
TTGGCTCGAAAGGTGGAGTTTTTGTCATTGACTGCAGCTAAGAACAATAA
GTGAAAGCTTTCTAGACCAT
BS13866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eas-RI | 1488 | CG3525-PI | 1..1488 | 17..1504 | 7440 | 100 | Plus |
eas-RH | 1488 | CG3525-PH | 1..1488 | 17..1504 | 7440 | 100 | Plus |
eas-RA | 1488 | CG3525-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eas-RI | 2331 | CG3525-RI | 329..1816 | 17..1504 | 7440 | 100 | Plus |
eas-RH | 2401 | CG3525-RH | 399..1886 | 17..1504 | 7440 | 100 | Plus |
eas-RA | 2195 | CG3525-RA | 193..1680 | 17..1504 | 7440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16283664..16284238 | 398..972 | 2860 | 99.8 | Plus |
X | 23542271 | X | 16284310..16284761 | 971..1422 | 2260 | 100 | Plus |
X | 23542271 | X | 16280887..16281273 | 17..403 | 1935 | 100 | Plus |
X | 23542271 | X | 16285021..16285103 | 1422..1504 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:16 has no hits.
BS13866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:03 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RB | 291..1777 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:52 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RA | 193..1679 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:54 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RB | 291..1777 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:49 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RA | 193..1679 | 17..1503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:49 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16280887..16281273 | 17..403 | 100 | -> | Plus |
X | 16283670..16284238 | 404..972 | 100 | -> | Plus |
X | 16284312..16284761 | 973..1422 | 100 | -> | Plus |
X | 16285022..16285102 | 1423..1503 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:52 Download gff for
BS13866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16174920..16175306 | 17..403 | 100 | -> | Plus |
arm_X | 16177703..16178271 | 404..972 | 100 | -> | Plus |
arm_X | 16178345..16178794 | 973..1422 | 100 | -> | Plus |
arm_X | 16179055..16179135 | 1423..1503 | 100 | | Plus |
BS13866.3prime Sequence
640 bp (577 high quality bases) assembled on 2006-10-13
> BS13866.3prime
ATGGTCTAGAAAGCTTTCACTTATTGTTCTTAGCTGCAGTCAATGACAAA
AACTCCACCTTTCGAGCCAAGTACTCATTATAACGAAGAAATGCATAGCC
TACGTAGTCGAAATCGATAGTGGAATGCTCGGCTTGCAACAGGGACCACA
CCGTCCAAAAGATATGCGATGCCAGCGCAAACTGATTGACCTGGACATAG
AGCAGTTCGACTTCGTCGTTTTGAATGTTGCTGCGCTGTAGGTACTCCTC
AAGGTAGACCCTCAGCCACTGGAGCTGGAACTCGCGCTTCGGATAGCGCG
AATAGTCGACCTCATCCACGCCGCACATCTCCGCAAAGTGGTTGCCAATG
TCGAAGGCCTGGAAATTGTAATCGGCATACTCGTAGTCGATGAAGTTCAC
CGTATTCAGGCTCTGCGTATAGATCACATTTCCCAGCAGAAGATCGTTGT
GGGAGAAGACAATCGGACTGTCCAGAGCCTCGAGGTATTCATATAGCTTG
TTGAACTCCTCGCGCAGGCGGCCGATAGGTAGAAACGTTTCTTTCACTCT
TTTGTGTTTTTCAGCATCACTAAAACGTTCAGGTACTAAATCAAAGAAAG
CTCTGCGTCTTCTTCCAAATCATCGGCATGGGGTTGGTCG
BS13866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3525-PC | 1488 | eas-RC | 866..1488 | 640..17 | 3055 | 99.6 | Minus |
CG3525-PE | 1557 | eas-RE | 935..1557 | 640..17 | 3055 | 99.6 | Minus |
CG3525-PB | 1488 | eas-RB | 866..1488 | 640..17 | 3055 | 99.6 | Minus |
CG3525-PA | 1488 | eas-RA | 866..1488 | 640..17 | 3055 | 99.6 | Minus |
CG3525-PD | 1425 | eas-RD | 803..1425 | 640..17 | 3055 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eas-RJ | 4575 | CG3525-RJ | 3438..4060 | 640..17 | 3080 | 99.7 | Minus |
eas-RI | 2331 | CG3525-RI | 1194..1816 | 640..17 | 3080 | 99.7 | Minus |
eas-RH | 2401 | CG3525-RH | 1264..1886 | 640..17 | 3080 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16284310..16284761 | 550..99 | 2260 | 100 | Minus |
X | 23542271 | X | 16285021..16285103 | 99..17 | 415 | 100 | Minus |
X | 23542271 | X | 16284148..16284238 | 640..549 | 395 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:40 has no hits.
BS13866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for
BS13866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3525-PD | 803..1425 | 17..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:33 Download gff for
BS13866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RH | 1264..1891 | 8..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:51:00 Download gff for
BS13866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RH | 1264..1891 | 8..640 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:51:00 Download gff for
BS13866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16284148..16284238 | 549..640 | 97 | -> | Minus |
X | 16284312..16284761 | 99..548 | 100 | -> | Minus |
X | 16285022..16285108 | 8..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:33 Download gff for
BS13866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16178181..16178271 | 549..640 | 97 | -> | Minus |
arm_X | 16178345..16178794 | 99..548 | 100 | -> | Minus |
arm_X | 16179055..16179141 | 8..98 | 95 | | Minus |
BS13866.5prime Sequence
681 bp (572 high quality bases) assembled on 2006-10-13
> BS13866.5prime
GAAGTTATCAGTCGACATGGGCACAGAAACCAAGAGCAACAGTTACACAG
GACAGATTTCAACAAGTGGCGGCAACCCCAAAGTGATGAAAGATTCTTTA
TCCTTAGTTCGTCAGACGGTCAATCAGCAAACGCTATCGCTATCGCAATC
GAACCAGGTCCAGAACCAATTGAATTCACATTCGAATTCCAATTCGTATC
CAAATCCAAGCGGGAGCGAAAACAAAAACGAAAACGAACAAAATTCGCGC
GATATTCGAGCCAAACCGGAGGATAAATCCAGAAAAGAGGCAATTGTACC
ATTTGTACCCATATTTGTTGAGGAGGCCGACGTAATTCAAGGGGCCAAGG
AACTGTTGAAGGTTATACGACCGACCTGGGACCTCAGCCACGTCGAGTTT
AAGAGTTTTACCGATGGCATCACAAACAAACTGGTCGGATGTTTTCATAA
GGAGATCTCCAAACTGAACGATGAGAACGGCGGATCGTATTTACCTATCA
AGACGCAGGGTTTGTCGCCCGTTCAGTCCGAGGATCCAGTCATCATTGAG
AAGGAGGACGATGATGAGTTCACAGACGATCGGGCAGCGGACGACGGGTC
ACCTGTACAGTACTCCGATAACGTAGTGCTCGTCAGGATATACGGTAACA
AAACGGACCTACTGATAGATCGCAAGGCGGA
BS13866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3525-PC | 1488 | eas-RC | 1..665 | 17..681 | 3325 | 100 | Plus |
CG3525-PB | 1488 | eas-RB | 1..665 | 17..681 | 3325 | 100 | Plus |
CG3525-PA | 1488 | eas-RA | 1..665 | 17..681 | 3325 | 100 | Plus |
CG3525-PD | 1425 | eas-RD | 28..602 | 107..681 | 2875 | 100 | Plus |
CG3525-PE | 1557 | eas-RE | 1..388 | 17..404 | 1940 | 100 | Plus |
CG3525-PE | 1557 | eas-RE | 457..734 | 404..681 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eas-RI | 2331 | CG3525-RI | 329..993 | 17..681 | 3325 | 100 | Plus |
eas-RH | 2401 | CG3525-RH | 399..1063 | 17..681 | 3325 | 100 | Plus |
eas-RA | 2195 | CG3525-RA | 193..857 | 17..681 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16280887..16281273 | 17..403 | 1935 | 100 | Plus |
X | 23542271 | X | 16283664..16283947 | 398..681 | 1405 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:53:53 has no hits.
BS13866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for
BS13866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3525-PA | 1..664 | 17..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:48 Download gff for
BS13866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RA | 191..856 | 14..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:44 Download gff for
BS13866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eas-RA | 191..856 | 14..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:44 Download gff for
BS13866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16280886..16281273 | 17..403 | 99 | -> | Plus |
X | 16283670..16283946 | 404..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:48 Download gff for
BS13866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16174919..16175306 | 17..403 | 99 | -> | Plus |
arm_X | 16177703..16177979 | 404..680 | 100 | | Plus |
BS13866.pep Sequence
Translation from 16 to 1503
> BS13866.pep
MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN
QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF
VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL
NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS
DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY
VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT
QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF
SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD
YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW
TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*
BS13866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eas-PI | 495 | CG3525-PI | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PH | 495 | CG3525-PH | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PA | 495 | CG3525-PA | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PB | 495 | CG3525-PB | 1..495 | 1..495 | 2586 | 100 | Plus |
eas-PC | 495 | CG3525-PC | 1..495 | 1..495 | 2586 | 100 | Plus |