Clone BS13866 Report

Search the DGRC for BS13866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:66
Vector:pDNR-Dual
Associated Gene/Transcripteas-RA
Protein status:BS13866.pep: full length peptide match
Sequenced Size:1520

Clone Sequence Records

BS13866.complete Sequence

1520 bp assembled on 2009-12-07

GenBank Submission: KX804832

> BS13866.complete
GAAGTTATCAGTCGACATGGGCACAGAAACCAAGAGCAACAGTTACACAG
GACAGATTTCAACAAGTGGCGGCAACCCCAAAGTGATGAAAGATTCTTTA
TCCTTAGTTCGTCAGACGGTCAATCAGCAAACGCTATCGCTATCGCAATC
GAACCAGGTCCAGAACCAATTGAATTCACATTCGAATTCCAATTCGTATC
CAAATCCAAGCGGGAGCGAAAACAAAAACGAAAACGAACAAAATTCGCGC
GATATTCGAGCCAAACCGGAGGATAAATCCAGAAAAGAGGCAATTGTACC
ATTTGTACCCATATTTGTTGAGGAGGCCGACGTAATTCAAGGGGCCAAGG
AACTGTTGAAGGTTATACGACCGACCTGGGACCTCAGCCACGTCGAGTTT
AAGAGTTTTACCGATGGCATCACAAACAAACTGGTCGGATGTTTTCATAA
GGAGATCTCCAAACTGAACGATGAGAACGGCGGATCGTATTTACCTATCA
AGACGCAGGGTTTGTCGCCCGTTCAGTCCGAGGATCCAGTCATCATTGAG
AAGGAGGACGATGATGAGTTCACAGACGATCGGGCAGCGGACGACGGGTC
ACCTGTACAGTACTCCGATAACGTAGTGCTCGTCAGGATATACGGTAACA
AAACGGACCTACTGATAGATCGCAAGGCGGAGACGCAAAACTTTCTTCTA
CTGCATACGTATGGGCTAGCGCCATCGCTGTATGCCACGTTCAAGAACGG
TCTCGTCTACGAATACGTACCTGGAACCACCCTGAATACGGACAGTGTGC
TCTGTCCAGAAATTTGGCCCTTGGTCGCCCGTCGCATGGCCGAGATGCAT
CGCAAGGTGAGAAAGCACGGGGATAGTTCGGCGACCAAACCCATGCCGAT
GATTTGGAAGAAGACGCAGAGCTTTCTTGATTTAGTACCTGAACGTTTTA
GTGATGCTGAAAAACACAAAAGAGTGAAAGAAACGTTTCTACCTATCGGC
CGCCTGCGCGAGGAGTTCAACAAGCTATATGAATACCTCGAGGCTCTGGA
CAGTCCGATTGTCTTCTCCCACAACGATCTTCTGCTGGGAAATGTGATCT
ATACGCAGAGCCTGAATACGGTGAACTTCATCGACTACGAGTATGCCGAT
TACAATTTCCAGGCCTTCGACATTGGCAACCACTTTGCGGAGATGTGCGG
CGTGGATGAGGTCGACTATTCGCGCTATCCGAAGCGCGAGTTCCAGCTCC
AGTGGCTGAGGGTCTACCTTGAGGAGTACCTACAGCGCAGCAACATTCAA
AACGACGAAGTCGAACTGCTCTATGTCCAGGTCAATCAGTTTGCGCTGGC
ATCGCATATCTTTTGGACGGTGTGGTCCCTGTTGCAAGCCGAGCATTCCA
CTATCGATTTCGACTACGTAGGCTATGCATTTCTTCGTTATAATGAGTAC
TTGGCTCGAAAGGTGGAGTTTTTGTCATTGACTGCAGCTAAGAACAATAA
GTGAAAGCTTTCTAGACCAT

BS13866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
eas-RI 1488 CG3525-PI 1..1488 17..1504 7440 100 Plus
eas-RH 1488 CG3525-PH 1..1488 17..1504 7440 100 Plus
eas-RA 1488 CG3525-PA 1..1488 17..1504 7440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
eas-RI 2331 CG3525-RI 329..1816 17..1504 7440 100 Plus
eas-RH 2401 CG3525-RH 399..1886 17..1504 7440 100 Plus
eas-RA 2195 CG3525-RA 193..1680 17..1504 7440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16283664..16284238 398..972 2860 99.8 Plus
X 23542271 X 16284310..16284761 971..1422 2260 100 Plus
X 23542271 X 16280887..16281273 17..403 1935 100 Plus
X 23542271 X 16285021..16285103 1422..1504 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:08:16 has no hits.

BS13866.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:03 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RB 291..1777 17..1503 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:52 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 193..1679 17..1503 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:54 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RB 291..1777 17..1503 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:49 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
eas-RA 193..1679 17..1503 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:49 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
X 16280887..16281273 17..403 100 -> Plus
X 16283670..16284238 404..972 100 -> Plus
X 16284312..16284761 973..1422 100 -> Plus
X 16285022..16285102 1423..1503 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:52 Download gff for BS13866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16174920..16175306 17..403 100 -> Plus
arm_X 16177703..16178271 404..972 100 -> Plus
arm_X 16178345..16178794 973..1422 100 -> Plus
arm_X 16179055..16179135 1423..1503 100   Plus

BS13866.3prime Sequence

640 bp (577 high quality bases) assembled on 2006-10-13

> BS13866.3prime
ATGGTCTAGAAAGCTTTCACTTATTGTTCTTAGCTGCAGTCAATGACAAA
AACTCCACCTTTCGAGCCAAGTACTCATTATAACGAAGAAATGCATAGCC
TACGTAGTCGAAATCGATAGTGGAATGCTCGGCTTGCAACAGGGACCACA
CCGTCCAAAAGATATGCGATGCCAGCGCAAACTGATTGACCTGGACATAG
AGCAGTTCGACTTCGTCGTTTTGAATGTTGCTGCGCTGTAGGTACTCCTC
AAGGTAGACCCTCAGCCACTGGAGCTGGAACTCGCGCTTCGGATAGCGCG
AATAGTCGACCTCATCCACGCCGCACATCTCCGCAAAGTGGTTGCCAATG
TCGAAGGCCTGGAAATTGTAATCGGCATACTCGTAGTCGATGAAGTTCAC
CGTATTCAGGCTCTGCGTATAGATCACATTTCCCAGCAGAAGATCGTTGT
GGGAGAAGACAATCGGACTGTCCAGAGCCTCGAGGTATTCATATAGCTTG
TTGAACTCCTCGCGCAGGCGGCCGATAGGTAGAAACGTTTCTTTCACTCT
TTTGTGTTTTTCAGCATCACTAAAACGTTCAGGTACTAAATCAAAGAAAG
CTCTGCGTCTTCTTCCAAATCATCGGCATGGGGTTGGTCG

BS13866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3525-PC 1488 eas-RC 866..1488 640..17 3055 99.6 Minus
CG3525-PE 1557 eas-RE 935..1557 640..17 3055 99.6 Minus
CG3525-PB 1488 eas-RB 866..1488 640..17 3055 99.6 Minus
CG3525-PA 1488 eas-RA 866..1488 640..17 3055 99.6 Minus
CG3525-PD 1425 eas-RD 803..1425 640..17 3055 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
eas-RJ 4575 CG3525-RJ 3438..4060 640..17 3080 99.7 Minus
eas-RI 2331 CG3525-RI 1194..1816 640..17 3080 99.7 Minus
eas-RH 2401 CG3525-RH 1264..1886 640..17 3080 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16284310..16284761 550..99 2260 100 Minus
X 23542271 X 16285021..16285103 99..17 415 100 Minus
X 23542271 X 16284148..16284238 640..549 395 97.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:25:40 has no hits.

BS13866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for BS13866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3525-PD 803..1425 17..640 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:52:33 Download gff for BS13866.3prime
Subject Subject Range Query Range Percent Splice Strand
eas-RH 1264..1891 8..640 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:51:00 Download gff for BS13866.3prime
Subject Subject Range Query Range Percent Splice Strand
eas-RH 1264..1891 8..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:51:00 Download gff for BS13866.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16284148..16284238 549..640 97 -> Minus
X 16284312..16284761 99..548 100 -> Minus
X 16285022..16285108 8..98 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:52:33 Download gff for BS13866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16178181..16178271 549..640 97 -> Minus
arm_X 16178345..16178794 99..548 100 -> Minus
arm_X 16179055..16179141 8..98 95   Minus

BS13866.5prime Sequence

681 bp (572 high quality bases) assembled on 2006-10-13

> BS13866.5prime
GAAGTTATCAGTCGACATGGGCACAGAAACCAAGAGCAACAGTTACACAG
GACAGATTTCAACAAGTGGCGGCAACCCCAAAGTGATGAAAGATTCTTTA
TCCTTAGTTCGTCAGACGGTCAATCAGCAAACGCTATCGCTATCGCAATC
GAACCAGGTCCAGAACCAATTGAATTCACATTCGAATTCCAATTCGTATC
CAAATCCAAGCGGGAGCGAAAACAAAAACGAAAACGAACAAAATTCGCGC
GATATTCGAGCCAAACCGGAGGATAAATCCAGAAAAGAGGCAATTGTACC
ATTTGTACCCATATTTGTTGAGGAGGCCGACGTAATTCAAGGGGCCAAGG
AACTGTTGAAGGTTATACGACCGACCTGGGACCTCAGCCACGTCGAGTTT
AAGAGTTTTACCGATGGCATCACAAACAAACTGGTCGGATGTTTTCATAA
GGAGATCTCCAAACTGAACGATGAGAACGGCGGATCGTATTTACCTATCA
AGACGCAGGGTTTGTCGCCCGTTCAGTCCGAGGATCCAGTCATCATTGAG
AAGGAGGACGATGATGAGTTCACAGACGATCGGGCAGCGGACGACGGGTC
ACCTGTACAGTACTCCGATAACGTAGTGCTCGTCAGGATATACGGTAACA
AAACGGACCTACTGATAGATCGCAAGGCGGA

BS13866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3525-PC 1488 eas-RC 1..665 17..681 3325 100 Plus
CG3525-PB 1488 eas-RB 1..665 17..681 3325 100 Plus
CG3525-PA 1488 eas-RA 1..665 17..681 3325 100 Plus
CG3525-PD 1425 eas-RD 28..602 107..681 2875 100 Plus
CG3525-PE 1557 eas-RE 1..388 17..404 1940 100 Plus
CG3525-PE 1557 eas-RE 457..734 404..681 1390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
eas-RI 2331 CG3525-RI 329..993 17..681 3325 100 Plus
eas-RH 2401 CG3525-RH 399..1063 17..681 3325 100 Plus
eas-RA 2195 CG3525-RA 193..857 17..681 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16280887..16281273 17..403 1935 100 Plus
X 23542271 X 16283664..16283947 398..681 1405 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 11:53:53 has no hits.

BS13866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:06 Download gff for BS13866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3525-PA 1..664 17..680 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:48 Download gff for BS13866.5prime
Subject Subject Range Query Range Percent Splice Strand
eas-RA 191..856 14..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:44 Download gff for BS13866.5prime
Subject Subject Range Query Range Percent Splice Strand
eas-RA 191..856 14..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:44 Download gff for BS13866.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16280886..16281273 17..403 99 -> Plus
X 16283670..16283946 404..680 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:48 Download gff for BS13866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16174919..16175306 17..403 99 -> Plus
arm_X 16177703..16177979 404..680 100   Plus

BS13866.pep Sequence

Translation from 16 to 1503

> BS13866.pep
MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQN
QLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIF
VEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKL
NDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYS
DNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEY
VPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKT
QSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVF
SHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVD
YSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFW
TVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK*

BS13866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
eas-PI 495 CG3525-PI 1..495 1..495 2586 100 Plus
eas-PH 495 CG3525-PH 1..495 1..495 2586 100 Plus
eas-PA 495 CG3525-PA 1..495 1..495 2586 100 Plus
eas-PB 495 CG3525-PB 1..495 1..495 2586 100 Plus
eas-PC 495 CG3525-PC 1..495 1..495 2586 100 Plus